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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Intrinsic Physiology Feature Extractor Resource Report Resource Website 1+ mentions |
Intrinsic Physiology Feature Extractor (RRID:SCR_028075) | IPFX | software toolkit, software resource | Software Python package for computing intrinsic cell features from electrophysiology data. Used to compute intrinsic cell features from intracellular electrophysiology data. | compute intrinsic cell features, intracellular electrophysiology data, | Free, Available for download, Freely available | https://github.com/alleninstitute/ipfx | SCR_028075 | Allen Intrinsic Physiology Feature Extractor (IPFX) | 2026-08-09 09:09:36 | 5 | ||||||||
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tximeta Resource Report Resource Website 1+ mentions |
tximeta (RRID:SCR_028005) | software toolkit, software resource | Software R package for reference sequence checksums for provenance identification in RNA-seq. Performs numerous annotation and metadata gathering tasks on behalf of users during the import of transcript counts and abundance from quantification tools such as salmon. Data are imported as SummarizedExperiment objects with associated GenomicRanges metadata. Correct metadata is added automatically via reference sequence digests, facilitating genomic analyses and assisting in computational reproducibility. | reference sequence checksums, provenance identification in RNA-seq, numerous annotation, metadata gathering, | NHGRI R01 HG009937; NIMH R01 MH118349; NCI P01 CA142538; NIEHS P30 ES010126; NHGRI U41 HG004059 |
PMID:32097405 | Free, Available for download, Freely available | SCR_028005 | Tximeta | 2026-08-09 09:09:50 | 1 | ||||||||
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DMRcate Resource Report Resource Website 1+ mentions |
DMRcate (RRID:SCR_028007) | software application, software resource | Software application for de novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions. | de novo identification and extraction, differentially methylated regions, human genome, | Free, Available for download, Freely available | SCR_028007 | 2026-08-09 09:09:35 | 2 | |||||||||||
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rGREAT Resource Report Resource Website 1+ mentions |
rGREAT (RRID:SCR_028008) | software toolkit, software resource | Software R package for functional enrichment on genomic regions. Functional enrichment analysis directly performed on genomic regions. | Functional enrichment analysis, functional enrichment on genomic regions, genomic regions, | PMID:36394265 | Free, Available for download, Freely available | SCR_028008 | Genomic Regions Enrichment of Annotations Tool | 2026-08-09 09:09:50 | 3 | |||||||||
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compareGroups Resource Report Resource Website 1+ mentions |
compareGroups (RRID:SCR_027994) | software toolkit, software resource | Software R package to create tables displaying results of univariate analyses, stratified or not by categorical variable groupings. | create tables, displaying results, univariate analyses, categorical variable groupings, | Free, Available for download, Freely available | https://github.com/isubirana/compareGroups | SCR_027994 | 2026-08-09 09:09:49 | 1 | ||||||||||
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EDAR study: biomarkers for Alzheimer's disease Resource Report Resource Website 1+ mentions |
EDAR study: biomarkers for Alzheimer's disease (RRID:SCR_004445) | EDAR | material resource, biomaterial supply resource | A European collaborative study to develop and validate new biomarkers for Alzheimer's disease. Central in the project is the development of an assay for the measurement of beta amyloid oligomers in cerebrospinal fluid and plasma. In order to validate the assay for beta amyloid oligomers, cerebrospinal fluid and plasma will be repeatedly collected in subjects with Alzheimer's disease, other types of dementia, mild cognitive impairment, and control subjects. | portal, biomaterial supply resource, beta amyloid oligomer, alzheimer's disease, dementia, mild cognitive impairment, control subject, cerebral spinal fluid, plasma, serum |
is listed by: One Mind Biospecimen Bank Listing has parent organization: VU University; Amsterdam; Netherlands |
Alzheimer's disease, Dementia, Mild Cognitive Impairment | European Union FP6 | Consortium members | nlx_143737 | SCR_004445 | Early Diagnosis of AD and as marker of treatment response, Early Diagnosis of AD and as marker of treatment response (EDAR study), EDAR study, EDAR study: biomarkers for Alzheimer's disease | 2026-08-09 09:03:56 | 2 | |||||
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Brain Connectivity Toolbox Resource Report Resource Website 100+ mentions |
Brain Connectivity Toolbox (RRID:SCR_004841) | BCT | software toolkit, software resource | A large selection of complex network measures in Matlab that are increasingly used to characterize structural and functional brain connectivity datasets. Several people have contributed to the toolbox, and if you wish to contribute with a new function or set of functions, please contact Olaf Sporns. All efforts have been made to avoid errors, but users are strongly urged to independently verify the accuracy and suitability of toolbox functions for the chosen application. Please report bugs or substantial improvements. | brain, connectivity, matlab, brain network, c++, structure, function, brain connectivity, matlab, magnetic resonance, os independent, statistical operation |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Human Connectome Coordination Facility is related to: Graphtools has parent organization: Indiana University; Indiana; USA |
CSIRO ICT Centre scholarship ; J.S. McDonnell Foundation Brain NRG JSMF22002082 |
PMID:19819337 | nlx_143925 | http://www.nitrc.org/projects/bct | SCR_004841 | 2026-08-09 09:04:09 | 370 | ||||||
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National Biobank of Finland Resource Report Resource Website 1+ mentions |
National Biobank of Finland (RRID:SCR_004679) | National Biobank of Finland | material resource, biomaterial supply resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023.To guarantee the top level of expertise in modern genetic and biological analyses, we have built an infrastructure that facilitates the collection of genome-wide information on the genetic background of diseases as well as functional information on the molecules that are critical in the disease process. Furthermore we have established the necessary storage, database and computational resources for the expert analyses of the massive amount of collected biological information. Our scientific expertise, technology platforms and large nationwide sample collections facilitate a highly competitive environment for research and education in molecular medicine of the 21st century. The biobanking wet lab effort is concentrated to KTL/Biomedicum Large scale DNA extraction and storage facility. The facility presently houses DNA from more than 200 000 individuals and is co-ordinated by National Public Health Institute. It is equipped with state of the art bar coding system for sample tracking, an automated Gentra DNA extraction equipment, liquid handling robots, storage facilities, and tailor made data management tools for optimal confidentiality and quality control. | dna | is listed by: One Mind Biospecimen Bank Listing | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_67744 | SCR_004679 | 2026-08-09 09:04:08 | 3 | ||||||||
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NEALS Sample Repository Resource Report Resource Website 1+ mentions |
NEALS Sample Repository (RRID:SCR_004271) | NEALS Sample Repository | material resource, biomaterial supply resource | Repository of serum, plasma, cerebrospinal fluid (CSF), whole blood, extracted DNA, and urine samples from NEALS and Massachusetts General Hospital Neurology Clinical Trials Unit (NCTU) research studies of amyotrophic lateral sclerosis (ALS). Samples from this repository are available to researchers for the purpose of furthering the understanding of ALS or developing disease biomarkers. Applications will be accepted at any time, but the committee meets bi-monthly to review applications. The application requires a brief description and scientific justification for the use of the samples. Priority will be given to members of NEALS and investigators from sites that participated in the collection of samples. Investigators must provide IRB approval from their institution. Applications may be submitted to: mghneuroclinicaltrialsunit (at) partners.org (please cc: tlincoln (at) partners.org) NEALS collects an administrative fee of $1,000 at the time of application submission to offset processing costs. If an application for samples is denied, 80% of the administrative fee will be returned. The administrative fee is waived for NEALS members. Checks may be made payable to: The Northeast ALS Consortium. | amyotrophic lateral sclerosis, serum, plasma, cerebral spinal fluid, urine, dna, whole blood, blood |
is listed by: One Mind Biospecimen Bank Listing has parent organization: NEALS: The Northeast ALS Consortium |
Amyotrophic Lateral Sclerosis, Motor neuron disease, Healthy | ALS Association | Public, Application, Fee, Acknowledgement required | nlx_143662 | http://www.nealsconsortium.org/news.html | SCR_004271 | Northeast ALS Consortium Sample Repository, NEALS Biofluid Repository, ALS Biofluid Repository | 2026-08-09 09:04:04 | 1 | ||||
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Estonian Genome Center Resource Report Resource Website 1+ mentions |
Estonian Genome Center (RRID:SCR_004467) | EGCUT, EGC | material resource, biomaterial supply resource |
The Estonian Biobank is the population-based biobank of the EGCUT. The project is conducted in accordance with the Estonian Genes Research Act and all participants have signed a broad informed consent form (www.biobank.ee |
biomedicine, population-based studies, population-based study, biobanking, genotyping, sequencing, data analysis, wbc, gene, environmental factor, disease, genomics, epidemiology, clinical data, dna, white blood cell, plasma, blood, lifestyle, demographic, genetic |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Tartu; Tartu; Estonia |
General population | PMID:24518929 PMID:27256120 |
Public: The anonymous data (and biological materials) of the gene donors are available for research projects. Before an application can be accepted for review, The research project has to obtain an approval from the Ethics Review Committee on Human Research of the University of Tartu. The applicant will be asked to submit the results of the research project that were obtained using the data of the gene donors, To the EGCUT by the time specified in the contract. These results will complement the EGCUT database. | nlx_45748 | http://www.geenivaramu.ee/ | http://www.geenivaramu.ee/index.php?lang=eng | SCR_004467 | Estonian Genome Center University of Tartu, Estonian Biobank | 2026-08-09 09:04:06 | 8 | |||
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onCore UK Resource Report Resource Website 1+ mentions |
onCore UK (RRID:SCR_004348) | onCore UK | material resource, biomaterial supply resource | No longer functioning as an independent charity, onCore UK is a national cancer biobanking organization. Our mission is to serve as an action team that informs, coordinates and develops cancer biobanking to enable research towards the discovery and development of new interventions against cancer. We also offer advice to researchers who need to collect and store samples for their own specific projects. Our main strategic objectives are: * To empower research using human biosamples to find new and effective means of preventing, detecting or treating cancer. * To improve access by researchers to the human biosamples they require for their work. * To facilitate an environment in which patients, the public, health professionals, researchers, funders of research, policy makers and regulators can work together to support cancer biobanking and the research it underpins. * To provide practical information, coordination and development for current and future people and organizations involved in cancer biobanking to ensure that they are not unnecessarily hindered in their work. * To provide an accurate and regularly updated picture of the cancer biobanking provision in the UK that will inform future decisions by funders supporting research using donated human biosamples. * To distribute the human biosamples that onCore UK has in its custody. onCore UK conducts its business within the overall scope of the National Cancer Research Institute (NCRI) and for the benefit of cancer research. In the past we have also worked with selected NHS hospitals in different parts of the country to collect biosamples and relevant clinical data donated by cancer patients. These biosamples are stored in a secure repository and researchers can apply to use them. We make anonymized biosamples and data available for scientifically and ethically approved research on a cost-recovery basis. onCore UK works with other cancer biobanks in the UK via the NCRI Confederation of Cancer Biobanks (CCB), and with other biobanks internationally, to improve access for researchers to larger numbers of high quality biosamples, to harmonize how biobanks work and to share expertise for the benefit of all involved. |
is listed by: One Mind Biospecimen Bank Listing has parent organization: National Cancer Research Institute is parent organization of: Confederation of Cancer Banks |
MRC ; Department of Health England ; Cancer Research UK |
nlx_36545 | SCR_004348 | 2026-08-09 09:03:52 | 1 | |||||||||
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Biobanking and Biomolecular Resources Research Infrastructure (BBMRI) Resource Report Resource Website 10+ mentions |
Biobanking and Biomolecular Resources Research Infrastructure (BBMRI) (RRID:SCR_004226) | BBMRI | material resource, biomaterial supply resource | BBMRI is a pan-European and internationally broadly accessible research infrastructure and a network of existing and de novo biobanks and biomolecular resources. The infrastructure will include samples from patients and healthy persons, representing different European populations (with links to epidemiological and health care information), molecular genomic resources and biocomputational tools to optimally exploit this resource for global biomedical research. During the past 3 years BBMRI has grown into a 53-member consortium with over 280 associated organizations (largely biobanks) from over 30 countries, making it the largest research infrastructure project in Europe. During the preparatory phase the concept of a functional pan-European biobank was formulated and has now been presented to Member States of the European Union and for associated states for approval and funding. BBMRI will form an interface between specimens and data (from patients and European populations) and top-level biological and medical research. This can only be achieved through a distributed research infrastructure with operational units in all participating Member States. BBMRI will be implemented under the ERIC (European Research Infrastructure Consortium) legal entity. BBMRI-ERIC foresees headquarters (central coordination) in Graz, Austria, responsible for coordination of the activities of National Nodes established in participating countries. BBMRI is in the process of submitting its application to the European Commission for a legal status under the ERIC regulation, with an expected start date at the end of 2011. Major synergism, gain of statistical power and economy of scale will be achieved by interlinking, standardizing and harmonizing - sometimes even just cross-referencing - a large variety of well-qualified, up-to date, existing and de novo national resources. The network should cover (1) major European biobanks with blood, serum, tissue or other biological samples, (2) molecular methods resource centers for human and model organisms of biomedical relevance, (3) and biocomputing centers to ensure that databases of samples in the repositories are dynamically linked to existing databases and to scientific literature as well as to statistical expertise. Catalog of European Biobanks www.bbmriportal.eu Username: guest / Password: catalogue The catalogue is intended to be used as a reference for scientists seeking information about biological samples and data suitable for their research. The BBMRI catalogue of European Biobanks provides a high-level description of Europe''s biobanks characteristics using a portal solution managing metadata and aggregate data of biobanks. The catalogue can be queried by country, by biobank, by ICD-groups, by specimen types, by specific strengths, by funding and more. A search function is available for all data. | blood, serum, tissue, dna, cdna, rna, plasma, cell line, bodily fluid, urine, blood cell isolate, buffy coat, patient, healthy, normal, cryopreserved, paraffin embedded, clinical data |
is listed by: One Mind Biospecimen Bank Listing is related to: BioResource Impact Factor is related to: German Biobank Registry is related to: BioMedBridges is related to: Biological Resource Centre - National Institute for Cancer Research has parent organization: Medical University of Graz; Graz; Austria is parent organization of: BBMRI Wiki |
All, Patient, Healthy, Normal | European Union | Public: The catalogue is intended to be used as a reference for scientists seeking information about biological samples and data suitable for their research. | nlx_24389 | http://www.bbmri.eu/index.php | SCR_004226 | Biobanking and Biomolecular Resources Research Infrastructure, BBMRI: Biobanking Biomolecular Resources Research Infrastructure, Biobanking Biomolecular Resources Research Infrastructure, BBMRI: Biobanking and Biomolecular Resources Research Infrastructure, Biobanking Biomolecular Resources Research Infrastructure (BBMRI) | 2026-08-09 09:04:04 | 33 | ||||
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DISCO Resource Report Resource Website 100+ mentions |
DISCO (RRID:SCR_004586) | DISCO | service resource, software resource | DISCO is an information integration approach designed to facilitate interoperation among Internet resources. It consists of a set of tools and services that allows resource providers who maintain information to share it with automated systems such as NIF. NIF is then able to harvest the information and keep those sets of information up-to-date. How is this accomplished? By using a series of files and/or scripts which are then placed in the root directory of the resource developer''s resource. (NIF can also host the files on its servers and crawl for changes there.) Once the files of the resource providers are in place, and DISCO is notified, the DISCO server can then recognize and consume the information shared, providing machine understandable information to NIF Integrator Servers (also known as Aggregators) about your resource. What can DISCO do for my resource? * Inform search engines about your resource and keep your NIF Registry resource description up-to-date. * Expose your data (semi-structured datasets or fields within your structured database) through NIF''s Data Federation you choose what data will be shared. * Create links from an NCBI database (e.g., PubMed, Protein, Nucleotide, etc.) to your data records in NIF using Entrez LinkOut. * Advertise your terminology or ontological information. * Share your resource''s news with the NIF community., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | interoperation, sitemap, linkout, news, harvest, aggregate, FASEB list |
is used by: NIF Data Federation has parent organization: Neuroscience Information Framework has parent organization: Yale School of Medicine; Connecticut; USA |
NIH | PMID:20387131 PMID:18975149 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143827 | SCR_004586 | registration and interoperation framework, DISCO: Extensible Web resource DISCOvery | 2026-08-09 09:03:55 | 332 | |||||
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MAKER Resource Report Resource Website 1000+ mentions |
MAKER (RRID:SCR_005309) | software toolkit, software resource | Software genome annotation pipeline. Portable and easily configurable genome annotation pipeline. Used to allow smaller eukaryotic and prokaryotic genomeprojects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to genome, produces ab-initio gene predictions and automatically synthesizes these data into gene annotations having evidence based quality values. | gene prediction, genome annotation, identifies repeats, aligns ESTs and proteins to genome, data management, genome annotation, annotation, curation, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian is related to: MAKER Web Annotation Service has parent organization: University of Utah; Utah; USA |
PMID:25501943 | SCR_023883, nlx_144363, biotools:maker | https://bio.tools/maker, https://github.com/Yandell-Lab/maker | SCR_005309 | Maker2, maker | 2026-08-09 09:04:13 | 1519 | |||||||
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Alien hunter Resource Report Resource Website 1+ mentions |
Alien hunter (RRID:SCR_004575) | software application, software resource | Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into the freely available Artemis genome viewer. |
is listed by: SoftCite has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:16837528 | nlx_56835 | SCR_004575 | Alien_hunter: Interpolated Variable Order Motifs for Identification of Horizontally Acquired DNA | 2026-08-09 09:04:07 | 3 | |||||||||
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US Biomax Resource Report Resource Website 50+ mentions |
US Biomax (RRID:SCR_004295) | US Biomax | material resource, biomaterial supply resource | Our robust searchable Tissue Bank database at US Biomax contains normal, non-cancerous disease and cancer samples, just a fraction of total paraffin tissue bank. Use advanced search function to define your search. Some of them have H&E images. Our tissue repository, tissue bank has huge paraffin tissue blocks, a large selection of histology tissue section slides of human cancer, normal tissue, rhesus and cynomolgus normal fresh frozen tissue as well as paraffin blocks and slides. It has also normal human organs in paraffin embedded tissue blocks as well as rhesus and cynomolgus monkey normal organ tissues. Snap frozen (fresh frozen) tissue of rhesus/cynomolgus monkey are also available. We also provide tissue array, custom tissue microarray (with samples you provided or from our tissue bank) as well as OEM services. Other products/services available include tissue microarray, paraffin tissue sections, histology services and quantitative telomerase detection kit. | FASEB list | is listed by: One Mind Biospecimen Bank Listing | nlx_31395 | SCR_004295 | US Biomax Inc. | 2026-08-09 09:03:54 | 93 | ||||||||
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Eigensoft Resource Report Resource Website 1000+ mentions Issue |
Eigensoft (RRID:SCR_004965) | EIGENSOFT | software toolkit, software resource | EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker''s variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes. Source code, documentation and executables for using EIGENSOFT 3.0 on a Linux platform can be downloaded. New features of EIGENSOFT 3.0 include supporting either 32-bit or 64-bit Linux machines, a utility to merge different data sets, a utility to identify related samples (accounting for population structure), and supporting multiple file formats for EIGENSTRAT stratification correction. | population genetics, genetics, stratification, variation |
is listed by: Debian is listed by: OMICtools is listed by: SoftCite has parent organization: Harvard Medical School; Massachusetts; USA |
PMID:17194218 DOI:10.1038/ng1847 |
OMICS_07868, nlx_93059 | https://sources.debian.org/src/eigensoft/ | http://genepath.med.harvard.edu/~reich/Software.htm | SCR_004965 | EIGENSOFT Software | 2026-08-09 09:04:10 | 1299 | |||||
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Mount Sinai Biobank Resource Report Resource Website 1+ mentions |
Mount Sinai Biobank (RRID:SCR_004845) | Mount Sinai Biobank | material resource, biomaterial supply resource | The Mount Sinai Biobank is a large collection of DNA and plasma samples that are stored in a way that protects patients'' privacy while allowing research to be performed on de-identified clinical information from Mount Sinai''s data warehouse system. The Biobank''s goal is to acquire samples from a total of 100,000 donors over a period of several years. Mount Sinai is one of only a handful of places nationwide establishing biobanks on such a large scale. Funded by the Charles R. Bronfman Institute for Personalized Medicine, the Biobank project is a research project that is approved by the Mount Sinai Institutional Review Board and is continuously reviewed. Biobank Facts: * 17947 donors between 18 and 89 years of age have already participated in Biobank. * 194111 aliquots of DNA and * 212005 aliquots of plasma are available for future research. | dna, plasma, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
Charles R. Bronfman Institute for Personalized Medicine | nlx_82806 | http://www.mssm.edu/research/institutes/institute-for-personalized-medicine/ipm-research/biobank | SCR_004845 | Mount Sinai School of Medicine Biobank | 2026-08-09 09:04:09 | 2 | ||||||
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eyeGENE Resource Report Resource Website 10+ mentions |
eyeGENE (RRID:SCR_004523) | eyeGENE | material resource, biomaterial supply resource | National network of research laboratories for genetic testing of eye disease. They offer testing for affected individuals coupled to registry of clinical information available through patient registry. Large data set for investigators to identify additional genetic risk factors and to explore relationship between genetic disease (genotype) and its clinical manifestation (phenotype). | familial exudative vitreal retinopathy, fzd4, foxc1, abca4, aniridia, pax6, axenfeld - rieger syndrome, pitx2, best's disease, vmd2, bietti's crystalline corneal-retinal dystrophy, cyp4v2, c1qtnf5/ ctrp5, ca4, choroideremia, chm, cnga1, cone rod dystrophy, abca4, congenital cranial dysinnervation disease, kif21a, congenital stationary night blindness, nyx, corneal anterior stromal dystrophy, bigh3, crb1, doyne honeycomb dystrophy, efemp1, glaucoma, cyp1b1, hoxa1, impdh1, juvenile x-linked retinoschisis, xlrs1, krt12, lrp5, meesmann's epithelial dystrophy, krt3, mertk, myoc, ndp, optic atrophy, opa1, optn, pantothenate kinase-associated neuropathy, pank2, pattern dystrophy, rds, pde6a, pde6b, phox2a, prpf31, retinitis pigmentosa, retinal degeneration, abca4, rgr, rho, rlbp1, robo3, rp1, rp2, rpe65, rpgr, sall4, sorsby fundus dystrophy, timp3, stargardt disease, elovl4, tulp1, genotype, phenotype, diagnostic, genotyping, clinical trial, genetic eye disease, blood, dna, cell line, genetic testing, treatment, genetics, ophthalmic disease, eye |
is recommended by: National Library of Medicine is listed by: One Mind Biospecimen Bank Listing has parent organization: National Eye Institute (NEI) Commons |
Genetic eye disease, Family member | NEI | PMID:22847030 | Restricted | nif-0000-00229 | https://eyegene.nih.gov/node/38, https://eyegene.nih.gov/node/36 | SCR_004523 | eyeGENE, National Ophthalmic Disease Genotyping Network (eyeGENE), National Ophthalmic Disease Genotyping Network (eyeGENETM), National Ophthalmic Disease Genotyping Network | 2026-08-09 09:03:55 | 17 | |||
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Unipro UGENE Resource Report Resource Website 100+ mentions |
Unipro UGENE (RRID:SCR_005579) | UGENE | software toolkit, software resource | A multiplatform open-source software to assist molecular biologists without much expertise in bioinformatics to manage, analyze and visualize their data. UGENE integrates widely used bioinformatics tools within a common user interface. The toolkit supports multiple biological data formats and allows the retrieval of data from remote data sources. It provides visualization modules for biological objects such as annotated genome sequences, Next Generation Sequencing (NGS) assembly data, multiple sequence alignments, phylogenetic trees and 3D structures. Most of the integrated algorithms are tuned for maximum performance by the usage of multithreading and special processor instructions. UGENE includes a visual environment for creating reusable workflows that can be launched on local resources or in a High Performance Computing (HPC) environment. UGENE is written in C++ using the Qt framework. The built-in plugin system and structured UGENE API make it possible to extend the toolkit with new functionality. | c++, windows, mac os, linux, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:22368248 DOI:10.1093/bioinformatics/bts091 |
GNU General Public License, v2, Acknowledgement requested | OMICS_01022, biotools:ugene | https://bio.tools/ugene, https://sources.debian.org/src/ugene/ | SCR_005579 | 2026-08-09 09:04:08 | 183 |
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