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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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KAVIAR Resource Report Resource Website 10+ mentions |
KAVIAR (RRID:SCR_013737) | data or information resource, database | A database containing a compilation of SNVs, indels, and complex variants observed in humans, designed to facilitate testing for the novelty and frequency of observed variants. | SNV, single nucleotide variant, database, indel, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Institute for Systems Biology; Washington; USA |
Inova Translational Medicine Institute | PMID:21965822 | Free, Public | biotools:kaviar | https://bio.tools/kaviar | SCR_013737 | queryable database of known variants, Known VARiants | 2026-08-10 09:34:54 | 18 | |||||
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Human Brain Transcriptome Resource Report Resource Website 100+ mentions |
Human Brain Transcriptome (RRID:SCR_013742) | HBT | data or information resource, database | A data repository containing transcriptome and associated metadata for the developing and adult human brain. It provides genome-wide, exon-level transcriptome data from both sexes and multiple ethnicities. | human brain, transcriptome data, brain regions, FASEB list |
is related to: Spatio-temporal transcriptome of the human brain has parent organization: Yale University; Connecticut; USA |
NIMH U01MH081896 | PMID:19477152 | SCR_013742 | 2026-08-10 09:34:54 | 107 | ||||||||
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dcGO Resource Report Resource Website 10+ mentions |
dcGO (RRID:SCR_014392) | data or information resource, database | A database of domain-centric ontologies on functions, phenotypes, diseases and more. As a biomedical ontology resource, dcGO integrates functional, phenotypic, disease, and drug information. As a protein domain resource, it includes annotations to both the individual domains and supra-domains. Domain classifications and ontologies are organized in hierarchies, and dcGO includes the facility to browse the hierarchies: SCOP Hierarchy for browsing domains, GO Hierarchy for browsing GO terms, and BO Hierarchy for browsing other terms (mostly phenotypes). Users can mine and browse through resources. | database, mining, domain centric ontology, phenotype, human disease, drug, biomedical ontology, protein domain, hierarchy |
uses: Gene Ontology has parent organization: University of Bristol; Bristol; United Kingdom |
PMID:23161684 | Acknowledgement required, Both flat files and MySQL tables are available for download | SCR_014392 | 2026-08-10 09:35:02 | 27 | |||||||||
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NURSA Transcriptomine Resource Report Resource Website 1+ mentions |
NURSA Transcriptomine (RRID:SCR_013746) | data or information resource, database | A database of tissue specific nuclear receptor transcriptomes based on annotated published genome wide transcriptional profiling experiments in the field of nuclear receptor signaling. Queries can include single and multiple genes, Gene Ontology terms, disease terms, and uploaded custom gene lists. | nuclear receptor signaling, transcriptome, database, nuclear receptors, transcription, genome-wide expression profiling, expression microarray |
is listed by: Nuclear Receptor Signaling Atlas is listed by: NIDDK Information Network (dkNET) |
NIDDK NURSA U19DK-62434; NCI Cancer Center P30CA125123 |
PMID:22786849 | Public | https://www.nursa.org/nursa/tools/index.jsf | SCR_013746 | Transcriptomine | 2026-08-10 09:34:54 | 1 | ||||||
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Chemical Translation Service Resource Report Resource Website 10+ mentions |
Chemical Translation Service (RRID:SCR_014681) | CTS | data or information resource, database, service resource | A translation service which contains a registry of pubicly available chemical information such as structures, chemical names, chemical synonyms, database identifiers, molecular masses, XlogP and proton-donor/acceptor data for compound-specific, structure-based cross references. It offers single ID conversion, batch ID conversion, InChI code conversion, and other services. | translation service, chemical translation, metabolomics, metabolomics tool, chemical properties, chemical structure, compound, chemical registry, cross reference |
is listed by: Metabolomics Workbench has parent organization: Metabolomics Fiehn Lab |
Available to public, A web GUI is used and a soap-based application-programming interface was implemented for automated access | SCR_014681 | Chemical Translation Service (CTS) | 2026-08-10 09:35:06 | 25 | ||||||||
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Kazusa Arabidopsis data opening site Resource Report Resource Website 1+ mentions |
Kazusa Arabidopsis data opening site (RRID:SCR_013511) | data or information resource, database | This site has been developed by Kazusa DNA Research Institute for the purpose of offering the science community the analyzed sequence data produced by a multi-national Arabidopsis genome sequencing project coordinated by the Arabidopsis Genome Initiatives (AGI). The aim of this service is to enable users to browse the annotated sequence data produced by all the sequencing teams of AGI through an user-friendly graphic display system and search engines. Gene structures proposed on the annotated sequences as well as those predicted by computer programs are presented and each graphic item has a hyperlink to detailed information of the corresponding area. The nucleotide sequence data deposited in GenBank by AGI was downloaded, re-computer-analyzed at Kazusa and parsed results are displayed graphically. | annoated, arabidopsis, dna, genome, sequence | nif-0000-20958 | SCR_013511 | KAOS | 2026-08-10 09:34:49 | 6 | ||||||||||
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Preprocessed Connectomes Project Resource Report Resource Website 1+ mentions |
Preprocessed Connectomes Project (RRID:SCR_014162) | PCP | data or information resource, database | A project which systematically preprocess the data from the 1000 Functional Connectomes Project (FCP) and International Neuroimaging Data-sharing Initiative (INDI) and openly share the results. Data is currently hosted in an Amazon Web Services Public S3 Bucket and at NITRC. | database, neuroimaging data, preprocessing |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is affiliated with: 1000 Functional Connectomes Project |
Public, Acknowledgement requested | https://preprocessed-connectomes-project.github.io | SCR_014162 | 2026-08-10 09:34:58 | 1 | ||||||||
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IMACEL Resource Report Resource Website 1+ mentions |
IMACEL (RRID:SCR_015868) | production service resource, data analysis service, analysis service resource, service resource | Artificial intelligence image analysis platform that facilitates life science research. It offers data analysis, processing functions, and security features to accelerate research productivity. | ai, artificial intelligence, research, biological research, life science, image analysis, data analysis, data processing, data security | Free trial available, Commercially available, Account required | SCR_015868 | 2026-08-10 09:35:28 | 2 | |||||||||||
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iModel Resource Report Resource Website 1+ mentions |
iModel (RRID:SCR_014811) | data or information resource, database | Database of interactive neural computation computer models at levels ranging from simple linear filters to large-scale networks of spiking units. Interface tools are provided while browsing and exploring models. | database, interactive, model, neural, neural computation | has parent organization: University of Washington; Seattle; USA | Available to the research community, Available for download | SCR_014811 | 2026-08-10 09:35:08 | 4 | ||||||||||
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Crossref EventData Resource Report Resource Website 1+ mentions |
Crossref EventData (RRID:SCR_016281) | data or information resource, database | Database of events about articles that is run by CrossRef. It allows users to view social media mentions, news publication references, annotations, and more. | cross, reference, event, data, mention, social, media | has parent organization: CrossRef | Freely available | SCR_016281 | Event Data, EventData | 2026-08-10 09:35:37 | 4 | |||||||||
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Grid-Enabled Measures Database Resource Report Resource Website 1+ mentions |
Grid-Enabled Measures Database (RRID:SCR_016043) | GEM | data or information resource, database | Database that contains behavioral and social science measures organized by theoretical constructs. GEM is designed to enable researchers to use common measures with the goal of exchanging harmonized data. | behavior, social, data, research, data sharing, exchange | NCI Y01 C16006001 | PMID:21521586 | Freely available | SCR_016043 | GEM Database | 2026-08-10 09:35:32 | 1 | |||||||
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Research-tested Intervention Programs (RTIPs) Resource Report Resource Website 10+ mentions |
Research-tested Intervention Programs (RTIPs) (RRID:SCR_016042) | RTIPs | data or information resource, database | Database of cancer control interventions and program materials. It is designed to provide program planners and public health practitioners easy and immediate access to research-tested materials. | cancer, control, intervention, prevention, diagnosis, planning, research, program, public, health, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian |
cancer | NCI | Freely available, Public | biotools:rtips | https://bio.tools/rtips | SCR_016042 | Research-tested Intervention Programs | 2026-08-10 09:35:30 | 25 | ||||
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Lancelet Genome Sequence and Annotation Project Database Resource Report Resource Website 1+ mentions |
Lancelet Genome Sequence and Annotation Project Database (RRID:SCR_014987) | data or information resource, database | Database project to document the genome sequence of the Lancelet, a basal extant chordate. Information provided includes reference haploid genome sequence and annotation data, gene models and function, and integrated information from diploid genome sequence and annotation data. | lancelet, genome annotation, haploid genome, diploid genome, model organism | Available to the research community | SCR_014987 | 2026-08-10 09:35:12 | 7 | |||||||||||
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SomaDetection Resource Report Resource Website 1+ mentions |
SomaDetection (RRID:SCR_015717) | algorithm resource, source code, software resource | Source code for a machine learning method to detect somas on confocal microscopic images of the Drosophila brain. The method can be applied to the original raw images where the noises are not removed and the number of somas is unknown. | soma detection, drosophilia, confocal microscopic image, machine learning, algorithm, c++ | DOI:10.1007/s12021-017-9342-0 | Free, Available for download | SCR_015717 | Soma Detection | 2026-08-10 09:35:32 | 1 | |||||||||
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BloodSpot Resource Report Resource Website 50+ mentions |
BloodSpot (RRID:SCR_015563) | data or information resource, database | Database that provides gene expression profiles of genes and gene signatures in healthy and malignant hematopoiesis and includes data from both humans and mice. In addition to the default plot, which displays an integrated expression plot, two additional levels of visualization are available: an interactive tree showing the hierarchical relationship between the samples, and a Kaplan-Meier survival plot. The database is sub-divided into several datasets that are accessible for browsing. | human gene signature, mouse gene signature, human gene database, mouse gene database, hematopoiesis, blood cell database, FASEB list | has parent organization: University of Copenhagen; Copenhagen; Denmark | Danish Research Council for Strategic Research ; NovoNordisk Foundation |
DOI:10.1093/nar/gkv1101 | Open source | SCR_015563 | 2026-08-10 09:35:23 | 95 | ||||||||
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COMPARTMENTS Subcellular localization database Resource Report Resource Website 1+ mentions |
COMPARTMENTS Subcellular localization database (RRID:SCR_015561) | data or information resource, database | Web resource that integrates evidence on protein subcellular localization from manually curated literature, high-throughput screens, automatic text mining, and sequence-based prediction methods. All evidence is mapped to common protein identifiers and Gene Ontology terms, and further unify it by assigning confidence scores that facilitate comparison of the different types and sources of evidence and visualize these scores on a schematic cell. | subcellular localization database | EMBL International PhD Programme 295–2012; Luxembourg Centre for Systems Biomedicine ; Novo Nordisk Foundation Center for Protein Research ; CSIRO Office of the Chief Executive ; CSIRO Computation and Simulation Sciences |
SCR_015561 | COMPARTMENTS, Compartments Database | 2026-08-10 09:35:23 | 7 | ||||||||||
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ProteomicsDB Resource Report Resource Website 100+ mentions |
ProteomicsDB (RRID:SCR_015562) | data or information resource, database | Database for the identification of the human proteome and its use across the scientific community. Users can browse proteins and chromosomes and contribute to the data repository. | human proteome, human proteomics, proteomics database, human proteomics database, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools is related to: ProteomeTools has parent organization: Technical University of Munich; Bavaria; Germany |
PMID:24870543 | The research community can contribute to this resource | r3d100013408, biotools:proteomicsdb | https://bio.tools/proteomicsdb, https://doi.org/10.17616/R31NJMU8 | SCR_015562 | 2026-08-10 09:35:31 | 180 | |||||||
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Food Repo Resource Report Resource Website 1+ mentions |
Food Repo (RRID:SCR_016097) | data or information resource, database | Database of barcoded food products. Food Repo provides data that is on the package of each product, and collects its data via food distributors and volunteer contributors. | food, diet, barcode, database, switzerland | Kristian Gerhard Jebsen Foundation | Freely available, Public | SCR_016097 | The Open Food Repo, OpenFood | 2026-08-10 09:35:31 | 2 | |||||||||
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C. elegans RNAi Collection (Ahringer) Resource Report Resource Website 10+ mentions |
C. elegans RNAi Collection (Ahringer) (RRID:SCR_017064) | data or information resource, database | C. elegans RNAi feeding library distributed by Source BioScience Ltd. Designed for genome wide study of gene function in C. elegans through loss of function studies. | Source BioScience Ltd, data, collection, bacterial, strain, Caenorhabditis elegans, RNA, interference, RNAi, gene, function, analysis, feeding, library | has parent organization: University of Cambridge; Cambridge; United Kingdom | Howard Hughes Medical Institute Predoctoral Fellow- ship ; Wellcome Trust Senior Research Fellowship |
PMID:12828945 | Available for purchase | SCR_017064 | 2026-08-10 09:35:48 | 16 | ||||||||
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Rodent tactile navigation Resource Report Resource Website 1+ mentions |
Rodent tactile navigation (RRID:SCR_016538) | data or information resource, database | Dataset. We have a DataNote paper in Gigascience, in press which introduces a large videography dataset that is freely available for anyone to study the principles of tactile navigation. | Free, Freely available | SCR_016538 | 2026-08-10 09:35:42 | 2 |
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