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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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iMosflm Resource Report Resource Website 100+ mentions |
iMosflm (RRID:SCR_014217) | software application, data processing software, image processing software, software resource | Software which processes diffraction data/images and produces an MTZ file of reflection indices with their intensities, standard deviations, and other parameters. The MTZ file is passed onto other programs of the CCP4 program suite for further data reduction. iMosflm processes data from CCD and pixel detectors. It is available for Windows, Mac OSX and Linux platforms. Tutorials are available at the website. | image processing software, diffraction image, mtz file |
is affiliated with: Pointless has parent organization: MRC Laboratory of Molecular Biology |
SCR_014217 | 2026-08-10 09:34:59 | 332 | |||||||||||
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Wisconsin Cortical Thickness Analysis (CTA) Toolbox Resource Report Resource Website |
Wisconsin Cortical Thickness Analysis (CTA) Toolbox (RRID:SCR_014180) | data analysis software, software application, software toolkit, software resource, data processing software | A Matlab tool to perform statistical analysis on cortical thickness signals on brain surfaces obtained from Freesurfer. It is used for multi-resolutional analysis of such cortical thickness signals and detecting group differences. It is based on the Spectral Graph Wavelet Transform (SGWT) toolbox and provides plug and play methods for deriving Wavelet Multiscale Descriptor (WMD), cortical thickness smoothing using SGWT, Multivariate General Linear Model (MGLM), and False Discovery Rate (FDR). | matlab, software toolkit, cortical thickness signal, data analysis software |
uses: FreeSurfer is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Wisconsin Partnership Program ; NIA R01AG040396; NIA R01AG021155; NSF RI 1116584; NSF CAREER 1252725; UW ADRC NIA P50 AG033514; UW ICTR NCRR 1UL1RR025011; NIA P30 AG010129; NIA K01 AG030514 |
http://pages.cs.wisc.edu/~wonhwa/code/CTA_toolbox.html, http://pages.cs.wisc.edu/~wonhwa/project/ctdiscrim.html | SCR_014180 | 2026-08-10 09:34:57 | 0 | |||||||||
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Northwestern University Schizophrenia Data and Software Tool (NUSDAST) Resource Report Resource Website |
Northwestern University Schizophrenia Data and Software Tool (NUSDAST) (RRID:SCR_014153) | NUSDAT | data or information resource, database, image collection | A repository of schizophrenia neuroimaging data collected from over 450 individuals with schizophrenia, healthy controls and their respective siblings, most with 2-year longitudinal follow-up. The data include neuroimaging data, cognitive data, clinical data, and genetic data. | database, neuroimaging, clinical, cognitive, genetic, schizophrenia, longitudinal |
uses: CAWorks is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Northwestern University; Illinois; USA |
Schizophrenia | NIMH 1R01 MH084803; NIMH 1U01 MH097435; NIMH P50 MH071616; NIMH R01 MH056584; NCRR P41 RR15241; NIGMS U24 GM104203; NIH Bio-Informatics Research Network Coordinating Center |
Available to the research community | SCR_014153 | Northwestern University Schizophrenia Data and Software Tool | 2026-08-10 09:34:58 | 0 | ||||||
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Seahorse Wave Resource Report Resource Website 100+ mentions |
Seahorse Wave (RRID:SCR_014526) | data analysis software, software application, data management software, software resource, data processing software | Software to manage Seahorse XFe24 Analyzer, which measures OCR and ECAR of live cells in a 24-well plate format. Users can create and modify assay templates and analyze and manage data. | hardware management software, seahorse, xf data analysis, live cells | has parent organization: Agilent Technologies | http://www.agilent.com/cs/pubimages/misc/User_Guide_Wave_Desktop_2-3.pdf | SCR_014526 | 2026-08-10 09:35:06 | 104 | ||||||||||
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pyLMM Resource Report Resource Website 10+ mentions |
pyLMM (RRID:SCR_014525) | data analysis software, software application, standalone software, software resource, data processing software | A Python package for doing linear mixed model associations in genome wide association studies (GWAS). The software corrects for population structure using EMMA. | python, data analysis software, linear mixed model, genome wide association studies, gwas, lmm, emma | DOI:10.1534/genetics.107.080101 | Install using pip | SCR_014525 | 2026-08-10 09:35:03 | 12 | ||||||||||
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ImageMagick Resource Report Resource Website 100+ mentions |
ImageMagick (RRID:SCR_014491) | software application, data processing software, image processing software, software resource | Software suite for creating, editing, composing, and converting bitmap images. It can read and write images in over 200 formats including PNG, JPEG, JPEG-2000, GIF, TIFF, DPX, EXR, WebP, Postscript, PDF, and SVG. The user can use this software to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bézier curves. | image editing, image processing software, image analysis software, bitmap, adjust image colors, bezier curves | is listed by: Debian | Restricted | https://sources.debian.org/src/imagemagick/ | SCR_014491 | 2026-08-10 09:35:05 | 140 | |||||||||
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NIS-Elements Resource Report Resource Website 1000+ mentions Rating or validation data |
NIS-Elements (RRID:SCR_014329) | data analysis software, software application, software toolkit, software resource, data processing software | Microscope imaging software suite used with Nikon products. NIS-Elements includes software applications for advanced and standard research, documentation, confocal microscopy, and high-content analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | element, microscope imaging software, software suite, nikon |
is listed by: SoftCite works with: Nikon: ECLIPSE Ti2 inverted microscope |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014329 | Nikon Instruments Software Elements, NIS Elements, Nikon Instruments Software | 2026-08-10 09:35:01 | 3515 | |||||||||
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TurboReg Resource Report Resource Website 50+ mentions |
TurboReg (RRID:SCR_014308) | software application, data processing software, image processing software, software resource | An ImageJ plugin for the automatic alignment of a source image (or a stack) to a target image. Manual, automatic, and batch alignment modes are available. Users may specify some landmarks to establish the initial correspondence between images. In automatic and batch modes, the landmarks are automatically refined to match the landmarks of the target image. After registration, the plugin creates a warped image using the final position of the source image and the target landmarks. The plugin can be called by a macro or by another plugin. Technical guidance is available on the website. | image processing software, imagej, plugin, image alignment, automatic alignment, landmark | has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland | PMID:18267377 | Available for download, Freely available for research purposes, Acknowledgement requested | SCR_014308 | 2026-08-10 09:35:01 | 83 | |||||||||
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ELIXIR Tools and Data Services Registry Resource Report Resource Website 10+ mentions |
ELIXIR Tools and Data Services Registry (RRID:SCR_014556) | data or information resource, topical portal, portal | Elixir Interoperability Platform to help people and machines to discover, access, integrate and analyse biological data. Encourages life science community to adopt standardized file formats, metadata, vocabularies and identifiers and works internationally to achieve its goals. Bioinformatics resource registry that provides scientific and technical information about analytical tools and data services for bioinformatics. Gateway to databases and tools for life science data analysis.Provides comprehensive and up-to-date catalogue of resources that are interactive and downloadable, and that offer programmatic access. The registry also allows the community to upload their own resources to the registry following a simple log in procedure. | bioinformatics, data service registry, tool registry, resource registry, registry |
lists: gProfiler2 lists: Galactic Circos lists: bio.tools is affiliated with: bio.tools is related to: FAIRsharing is related to: Laniakea |
Free, Freely available | SCR_014556 | European Infrastructure for Biological Information Tools | 2026-08-10 09:35:06 | 21 | |||||||||
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Ventana Image Viewer Resource Report Resource Website 1+ mentions |
Ventana Image Viewer (RRID:SCR_014446) | software application, data processing software, image processing software, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 12,2024. A digital slide image software that is used with the VENTANA iScan Coreo Au slide scanner. This software helps facilitate viewing high quality images with little latency. The image view software can also support the viewing of multiple images simultaneously. | ventana, image software, ventana iscan coreo, hardware management software, image processing, digital slide image, slide scanner | THIS RESOURCE IS NO LONGER IN SERVICE | http://www.ventana.com/product/page?view=dpusecases | SCR_014446 | 2026-08-10 09:35:02 | 1 | ||||||||||
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BatchTINT Resource Report Resource Website 1+ mentions |
BatchTINT (RRID:SCR_014804) | BatchTINTV2, BatchTINTV3 | data analysis software, software application, software repository, software resource, data processing software | GUI created by the Taub Institute in order to create an end-user friendly batch processing solution to complement Axona's new command line modification of TINT. This GUI allows the user to define a directory. Within this directory it will be continuously (unless closed) searching for new files to analyze via TINT. | python, gui, batch processing, tint, axona, directory | NIA R01 AG050425; Alzheimer’s Association 2015NIRG341570 |
DOI:10.5281/zenodo.200977 | Open access, Available for download, Operates on Windows | https://doi.org/10.5281/zenodo.200977 | https://github.com/GeoffBarrett/BatchTINTV2/tree/2.0.0 | SCR_014804 | BatchTINTV2, BatchTINTV3 | 2026-08-10 09:35:12 | 3 | |||||
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TeachingDemos Resource Report Resource Website 1+ mentions |
TeachingDemos (RRID:SCR_014689) | data or information resource, training resource, portal, online course | A portal and resource for tutorials on a variety of data analysis techniques, the use of tools such as MetaMapR, workshops on data visualization, and R code manuals. | is listed by: Metabolomics Workbench | Freely available | SCR_014689 | 2026-08-10 09:35:06 | 7 | |||||||||||
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Johns Hopkins Research Data Repository Resource Report Resource Website 1+ mentions |
Johns Hopkins Research Data Repository (RRID:SCR_014728) | service resource, storage service resource, data repository | Open access repository for Johns Hopkins University researchers to share their research data. Data repository is administered by professional curators at JHU Data Services, who will work with depositors to enable future discovery and reuse of your data, and ensure your data is Findable, Accessible, Interoperable and Reusable (FAIR). Each dataset has citation and DOI, facilitating attribution, and connection to research publications. | FAIR, data collection, data set, public data, education, training, data archive | Free, Freely available | r3d100011836 | https://doi.org/10.17616/R3RW77 | https://archive.data.jhu.edu/dvn/, http://dms.data.jhu.edu/archiving-2/ | SCR_014728 | 2026-08-10 09:35:06 | 8 | ||||||||
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BRAINS Imagebank Resource Report Resource Website 10+ mentions |
BRAINS Imagebank (RRID:SCR_014576) | data or information resource, database, image collection | A searchable collection of anonymised images and associated clinical data. It includes normal individuals at all ages (from prenatal to old age). The image bank contains integrated data sets already collected as part of research studies which include control subjects. New data is added as they become available. | database, image collection, brain, normal, control, human, integrated data set | is hosted by: University of Edinburgh; Scotland; United Kingdom | Registration required | SCR_014576 | Brain Images of Normal Subjects (BRAINS) Imagebank, Brain Images of Normal Subjects Imagebank | 2026-08-10 09:35:07 | 12 | |||||||||
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SLiCAP Resource Report Resource Website |
SLiCAP (RRID:SCR_014742) | data analysis software, software application, software toolkit, software resource, data processing software | A software toolbox containing a symbolic linear circuit analysis program. It is a MATLAB application that helps set up and solve design equations of electronic circuits. | symbolic network simulation tool, symbolic linear circuit, analysis, electronic circuit, matlab, data analysis software, circuit | Open source, Available for download | SCR_014742 | Symbolic Linear Circuit Analysis | 2026-08-10 09:35:06 | 0 | ||||||||||
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SCAM Resource Report Resource Website 10+ mentions |
SCAM (RRID:SCR_014741) | data analysis software, software application, software toolkit, software resource, data processing software | Software toolbox for deriving and solving circuit equations symbolically in MATLAB. | matlab, circuit equations, symbolic solving, derivation, circuit analysis | Open source, Available for download | SCR_014741 | Symbolic Circuit Analysis in Matlab, Symbolic Circuit Analysis in Matlab (SCAM) | 2026-08-10 09:35:11 | 43 | ||||||||||
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HDD Access Resource Report Resource Website |
HDD Access (RRID:SCR_014581) | HDD | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 29,2025. Database built up with software and services that maintains multiple versions of terminologies, map sets, and values sets concurrently. HDD Access has superseded Concept Hub. | database, terminology, healthcare, biomedical, data dictionary, concept hub | is related to: Concept Hub | Commercial | nif-0000-33434 | SCR_014581 | 3M HDD Access, 3M Healthcare Data Dictionary | 2026-08-10 09:35:04 | 0 | |||||||
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Australian Data Archive Resource Report Resource Website 1+ mentions |
Australian Data Archive (RRID:SCR_014706) | service resource, storage service resource, data repository | A consortium of leading national Australian universities which collects and preserves digital research data and makes these data available for secondary analysis. The consortium provides a data catalogue comprised of seven sub-archives: Social Science, HIstorical, Indigenous, Longitudinal, Qualitative, Crime and Justice, and International. All users can browse and search the catalogue, view study and variable documentation, and download related material. Registered users can also analyze and visualize most data online and users who have completed the relevant undertaking form(s) can download entire studies or subsets of variables. Deposited data are processed, reviewed, and published for research use. | data archive, data catalogue, australia, digital research data |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Available to the research community | DOI:10.26193, DOI:10.17616/R3DS3K, DOI:10.25504/FAIRsharing.sN8d9i | https://doi.org/10.26193, https://dx.doi.org/10.26193, http://doi.org/10.17616/R3DS3K, https://fairsharing.org/10.25504/FAIRsharing.sN8d9i | SCR_014706 | 2026-08-10 09:35:10 | 9 | ||||||||
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Relibase Resource Report Resource Website 1+ mentions |
Relibase (RRID:SCR_014888) | data or information resource, web application, database, software resource | Web-based system for searching and analysing protein-ligand structures in the Protein Data Bank (PDB). The database provides an easily accessible web-browser interface and clear 3D structure visualisation that allows for 3D protein-ligand interaction searches, automatic superimposition and detailed analysis of related binding sites to identify protein flexibility, ligand overlap, and conserved water positions. | structural biology, protein, ligand, protein data bank, pdb, visualization, analysis, molecular recognition | Available to the academic community | SCR_014888 | 2026-08-10 09:35:12 | 5 | |||||||||||
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GVKBIO databases Resource Report Resource Website 1+ mentions |
GVKBIO databases (RRID:SCR_014893) | data or information resource, web application, database, software resource | Collection of databases with standalone databases, which gives opportunity for customers to integrate the data into their internal tools and databases, as well as online databases, that are available to the customers from a dedicated website where an individual can query and export the data in the selected format. The standalone database topics include medicinal chemistry, drugs and target class based compounds. The online databases are comprised of three major compilations: GVK BIO Online Structure Activity Relation Database (GOSTAR), GVK BIO Biomarker Database (GOBIOM), and Clinical Trial Outcome Database (CTOD). | research, database, online, standalone, medicinal chemistry, drug, clinical, toxicity, biomarker, contract research organization, cro | Commercial | SCR_014893 | GVK Biosciences, GVK BIO | 2026-08-10 09:35:12 | 3 |
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