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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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SenseLab Resource Report Resource Website 10+ mentions |
SenseLab (RRID:SCR_007276) | SenseLab | data or information resource, organization portal, portal, database | The SenseLab Project is a long-term effort to build integrated, multidisciplinary models of neurons and neural systems. It was founded in 1993 as part of the original Human Brain Project, which began the development of neuroinformatics tools in support of neuroscience research. It is now part of the Neuroscience Information Framework (NIF) and the International Neuroinformatics Coordinating Facility (INCF). The SenseLab project involves novel informatics approaches to constructing databases and database tools for collecting and analyzing neuroscience information, using the olfactory system as a model, with extension to other brain systems. SenseLab contains seven related databases that support experimental and theoretical research on the membrane properties: CellPropDB, NeuronDB, ModelDB, ORDB, OdorDB, OdorMapDB, BrainPharmA pilot Web portal that successfully integrates multidisciplinary neurocience data. | neuron, model, olfactory system, brain, disease, neuronal, olfactory |
is related to: Neuroscience Information Framework is related to: International Neuroinformatics Coordinating Facility has parent organization: Yale University; Connecticut; USA is parent organization of: SimToolDB |
Aging | Human Brain Project ; Multidisciplinary University Research Initiative ; NIMH ; NIA ; NICD ; NINDS ; NIDCD RO1 DC 009977 |
nif-0000-00017 | SCR_007276 | SenseLab Project, The SenseLab Project | 2026-08-10 09:33:05 | 41 | ||||||
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GoBean - a Java application for Gene Ontology enrichment analysis Resource Report Resource Website 10+ mentions |
GoBean - a Java application for Gene Ontology enrichment analysis (RRID:SCR_005808) | GoBean | software application, data processing software, software resource | GoBean is a Java application for gene ontology enrichment analysis. It utilizes the NetBeans platform framework. Features * Graphical comparison of multiple enrichment analysis results * Versatile filter facility for focused analysis of enrichment results * Effective exploitation of the graphical/hierarchical structure of GO * Evidence code based association filtering * Supports local data files such as the ontology obo file and gene association files * Supports late enrichment methods and multiple testing corrections * Built-in ID conversion for common species using Ensembl biomart service Platform: Windows compatible, Mac OS X compatible, Linux compatible | java, gene ontology, ontology, gene association, analysis, enrichment, term enrichment |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Gachon University of Medicine and Science; Incheon; South Korea |
PMID:22360891 | Free for academic use | nlx_149296 | http://neon.gachon.ac.kr/GoBean/ | SCR_005808 | 2026-08-10 09:32:40 | 22 | ||||||
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American College of Medical Genetics and Genomics Resource Report Resource Website 50+ mentions |
American College of Medical Genetics and Genomics (RRID:SCR_005769) | ACMG | data or information resource, organization portal, portal | An organization composed of biochemical, clinical, cytogenetic, medical and molecular geneticists, genetic counselors and other health care professionals committed to the practice of medical genetics to Improve Health Through Medical Genetics. The American College of Medical Genetics and Genomics will: * Define and promote excellence in the practice of medical genetics and genomics in the integration of translational research into practice; * Promote and provide medical genetics and genomics education; * Increase access to medical genetics and genomics services and integrate them into patient care; * Advocate for and represent providers of medical genetics and genomics services and their patients; and * Maintain structure and integrity of ACMG and its value to members and the public. | genetics, genomics, medical, biochemical, clinical, cytogenetic, molecular, geneticist, genetic counselor, health care professional, medical genetics | is listed by: OMICtools | PMID:21311339 | OMICS_01775, nlx_149234 | http://www.acmg.net | SCR_005769 | American College of Medical Genetics, ACMG - Translating Genes Into Health, American College of Medical Genetics Genomics | 2026-08-10 09:32:39 | 61 | ||||||
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BRAINSTools Resource Report Resource Website 10+ mentions |
BRAINSTools (RRID:SCR_006618) | BRAINS | software application, image analysis software, data processing software, software resource | Medical image processing software suite for brain analysis. | image processing, brain analysis, source code |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Iowa; Iowa; USA is parent organization of: BRAINSCut is parent organization of: BRAINSCortex is parent organization of: BRAINSROIAuto is parent organization of: BRAINSTestData is parent organization of: BRAINSConstellationDetector is parent organization of: BRAINSTracer |
Available for download | nlx_155696 | https://github.com/BRAINSia/BRAINSTools https://github.com/BRAINSia/BRAINSTools/wiki | SCR_006618 | Brain Research - Analysis of Images Networks and Systems | 2026-08-10 09:32:53 | 24 | ||||||
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Labome Resource Report Resource Website 1+ mentions |
Labome (RRID:SCR_007384) | material resource, reagent supplier | Database of hundreds of thousands of products submitted by reagent provider partners, and millions of webpages selected from reagent suppliers. All are organized according to genes, species, and reagent types (antibodies, recombinant proteins, ELISA, siRNA, cDNA clones, biochemicals, and others). | antibody, reagent, protein, peptide, elisa, cdna clone, microrna, biochemical, database | is used by: NIF Data Federation | nif-0000-00384 | SCR_007384 | Labome.com, ExactAntigen / Labome, ExactAntigen, ExactAntigen.com | 2026-08-10 09:33:07 | 2 | |||||||||
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ALSPAC Resource Report Resource Website 100+ mentions |
ALSPAC (RRID:SCR_007260) | ALSPAC | data or information resource, project portal, portal | A long-term health research project which follows pregnant women and their offspring in a continuous health and developmental study. More than 14,000 mothers enrolled during pregnancy in 1991 and 1992, and the health and development of their children has been followed in great detail. The ALSPAC families have provided a vast amount of genetic and environmental information over the years which can be made available to researchers globally. | longitudinal, study, parent, child, health, research, mother, development, research, disease, genetic, environmental | has parent organization: University of Bristol; Bristol; United Kingdom | UK Medical Research Council ; Wellcome Trust ; University of Bristol |
Available to the research community | nif-0000-30224 | SCR_007260 | The Avon Longitudinal Study of Parents and Children, Avon Longitudinal Study of Parents and Children | 2026-08-10 09:33:13 | 485 | ||||||
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Brain Resource Resource Report Resource Website 10+ mentions |
Brain Resource (RRID:SCR_006172) | Brain Resource Company | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 10th,2023. Commercial provider of cognitive assessments, including their proprietary database, the Brain Resource International Database (BRID) that allows users to quantify individual differences in brain function, compare individual performance against peers, and provide a robust frame of reference for clinical assessment and treatment decisions. Database provides evidence for brain behavior connection so important to reliably enabling optimal solutions for mental health and wellbeing. It powers all Brain Resource products. | human brain, brain health, brain fitness, stress, assessment, treatment, depression, adhd, reference database, personalized medicine, FASEB list | is parent organization of: WebNeuro | Depressive Disorder, Attention deficit-hyperactivity disorder, Brain disorder, Traumatic Brain injury | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_008019, nlx_151813, nif-0000-10179 | SCR_006172 | 2026-08-10 09:32:47 | 28 | |||||||
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A statistical framework for genomic data fusion Resource Report Resource Website 100+ mentions |
A statistical framework for genomic data fusion (RRID:SCR_007219) | data or information resource, data set, source code, software resource | A statistical framework for genomic data fusion is a computational framework for integrating and drawing inferences from a collection of genome-wide measurements. Each dataset is represented via a kernel function, which defines generalized similarity relationships between pairs of entities, such as genes or proteins. The kernel representation is both flexible and efficient, and can be applied to many different types of data. Furthermore, kernel functions derived from different types of data can be combined in a straightforward fashion. Recent advances in the theory of kernel methods have provided efficient algorithms to perform such combinations in a way that minimizes a statistical loss function. These methods exploit semidefinite programming techniques to reduce the problem of finding optimizing kernel combinations to a convex optimization problem. Computational experiments performed using yeast genome-wide datasets, including amino acid sequences, hydropathy profiles, gene expression data and known protein-protein interactions, demonstrate the utility of this approach. A statistical learning algorithm trained from all of these data to recognize particular classes of proteins--membrane proteins and ribosomal proteins--performs significantly better than the same algorithm trained on any single type of data. Matlab code to center a kernel matrix and Matlab code for normalization are available. | kernel matrix, random, gene expression, blast, smith-waterman, pfam hmm, hydrophobicity fft, linear interaction, diffusion kernel, protein, membrane, ribosomal | has parent organization: University of Washington; Seattle; USA | PMID:15130933 | nlx_149420 | SCR_007219 | 2026-08-10 09:33:04 | 155 | |||||||||
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amide Resource Report Resource Website 100+ mentions |
amide (RRID:SCR_005940) | AMIDE | software application, image analysis software, data processing software, software resource | Software tool for viewing, analyzing, and registering volumetric medical imaging data sets. It has been written on top of GTK+ and runs on any system that supports this toolkit (Linux, Windows, Mac OS X, etc.). The program incorporates automatic non-orthogonal data reslicing, allowing multiple data set to be fused without imposed constraints on the dimensions, anisotrophy, or voxel sizes of the data. Additional features include 3D ROI (ellipses, cylinders, boxes, and isocontours), multi-slice viewing, volume rendering, and data importing through the (X)MedCon library. | volumetric medical imaging data, data analysis, data visualization, non-orthogonal data |
is listed by: Debian has parent organization: Stanford University; Stanford; California |
PMID:14649056 | Free, Freely available | nif-0000-00261 | https://sources.debian.org/src/amide/ | SCR_005940 | , a medical image data examiner, A Medical Image Data Examiner | 2026-08-10 09:32:42 | 487 | |||||
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Acumen Consortium Resource Report Resource Website 1+ mentions |
Acumen Consortium (RRID:SCR_006599) | ACUMEN | data or information resource, organization portal, portal | European research collaboration aimed at understanding the ways in which researchers are evaluated by their peers and by institutions, and at assessing how the science system can be improved and enhanced. This FP7 project is a cooperation among nine European research institutes with Professor Paul Wouters (CWTS ����?? Leiden University) as principal investigator. | altmetrics, evaluation, performance | is listed by: FORCE11 | European Union FP7 26663 | nlx_156026 | http://www.force11.org/node/4717 | SCR_006599 | Academic Careers Understood through Measurement and Norms | 2026-08-10 09:32:57 | 1 | ||||||
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DELSA Resource Report Resource Website 1+ mentions |
DELSA (RRID:SCR_006231) | DELSA | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 1, 2022. Organization whose mission is to build and promote a sustainable ecosystem of professional societies, funding agencies, foundations, companies, and citizens together with life science researchers and innovators in computing, infrastructure and analysis with the expressed goal of translating new discoveries into tools, resources and products. | life science, collective innovation, framework, data sharing, science, education, environment, energy, ecology, food, healthcare, transdiscipline, collaboration | NSF | PMID:22523528 | THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_151790 | SCR_006231 | Data-Enabled Life Sciences Alliance, DELSAglobal, DELSA: Data-Enabled Life Sciences Alliance, DELSA Global, Data-enabled Life Science Initiative | 2026-08-10 09:32:48 | 2 | ||||||
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NCGC Pharmaceutical Collection Resource Report Resource Website 1+ mentions |
NCGC Pharmaceutical Collection (RRID:SCR_006909) | NPC | material resource, reagent supplier | The NCGC Pharmaceutical Collection (NPC) is a comprehensive, publically-accessible collection of approved and investigational drugs for high-throughput screening that provides a valuable resource for both validating new models of disease and better understanding the molecular basis of disease pathology and intervention. The NPC has already generated several useful probes for studying a diverse cross section of biology, including novel targets and pathways. NCGC provides access to its set of approved drugs and bioactives through the Therapeutics for Rare and Neglected Diseases (TRND) program and as part of the compound collection for the Tox21 initiative, a collaborative effort for toxicity screening among several government agencies including the US Environmental Protection Agency (EPA), the National Toxicology Program (NTP), the US Food and Drugs Administration (FDA), and the NCGC. Of the nearly 2750 small molecular entities (MEs) that have been approved for clinical use by US (FDA), EU (EMA), Japanese (NHI), and Canadian (HC) authorities and that are amenable to HTS screening, we currently possess 2,400 as part of our screening collection. The NPC resource currently consists of (i) the physical collection suitable for high throughput screening (HTS) and (ii) the informatics browser and database. Putting together the physical collection has been surprisingly challenging in terms of the time and effort required in the informatics, compound management and synthetic chemistry related activities required for this endeavor. We provide access to the NPC screening library through collaboration. Please contact our Scientific Director Dr. Chris Austin for additional information. The other half of the NPC resource is the NPC browser. This is a self-contained software that is actively developed and maintained by the informatics group to provide electronic access to the NPC content. The latest version of the NPC browser for various platforms can be downloaded. | drug, disease, high-throughput screening, molecule, molecular entity, compound, small molecule | has parent organization: NIH Chemical Genomics Center | NHGRI | PMID:21525397 | nlx_144647 | SCR_006909 | The NCGC Pharmaceutical Collection, National Center for Advancing Translational Sciences Pharmaceutical Collection, NIH Chemical Genomics Center Pharmaceutical Collection, National Institutes of Health Chemical Genomics Center Pharmaceutical Collection, NCATS Pharmaceutical Collection | 2026-08-10 09:32:58 | 5 | ||||||
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National Genome Research Network Resource Report Resource Website 10+ mentions |
National Genome Research Network (RRID:SCR_006626) | NGFN | data or information resource, organization portal, portal | The program of medical genome research is a large-scale biomedical research project which extends the national genome research net (NGFN) and will be funded by the federal ministry of education and research (BMBF) from 2008-2013. Currently the program includes two fields: * Research ** NGFN-Plus: With the aim on combating diseases that are central to health policy, several hundred researchers are systematically investigating the complex molecular interactions of the human body. They are organized in 26 Integrated Genome Research Networks. * Application ** NGFN-Transfer: The rapid transfer of results from medical genome research into medical and industrial application is the aim of the scientists from research institutes and biomedical enterprises that cooperate in eight Innovation Alliances. AREAS OF DISEASE * Cardiovascular disease * Cancer * Neuronal diseases * Infections and Inflammations * Environmental factors | genome, research, gene, disease | Cardiovascular disease, Cancer, Neuronal disease, Infectious disease, Inflammation, Disease linked to environment | BMBF | nlx_151595 | SCR_006626 | NGFN - National Genome Research Network, German National Genome Research Network | 2026-08-10 09:32:58 | 26 | |||||||
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NC-IUPHAR Resource Report Resource Website 1+ mentions |
NC-IUPHAR (RRID:SCR_006901) | NC-IUPHAR | data or information resource, organization portal, portal | Issues guidelines for nomenclature and classification of human biological targets, including targets of current and future prescription medicines. Works to facilitate interface between discovery of new sequences from Human Genome Project and designation of derived entities as functional biological targets and potential drug targets. Developes database which provides access to data on all known biological targets. | Receptor nomenclature and drug classification, biological targets data, functional biological targets, potential drug targets, nomenclature, classification of human biological targets, targets of current and future prescription medicines |
has parent organization: International Union of Basic and Clinical Pharmacology is parent organization of: IUPHAR/BPS Guide to Pharmacology |
Free, Freely available | nlx_54120 | https://www.guidetopharmacology.org/nciupharPublications.jsp | http://www.iuphar.org/nciuphar.html | SCR_006901 | Nomenclature and Standards Committee of the International Union of Basic and Clinical Pharmacology | 2026-08-10 09:33:04 | 4 | |||||
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Orphanet Resource Report Resource Website 100+ mentions |
Orphanet (RRID:SCR_006628) | Orphanet | data or information resource, portal | European website providing information about orphan drugs and rare diseases. It contains content both for physicians and for patients. Reference portal for rare diseases and orphan drugs to help improve diagnosis, care and treatment of patients with rare diseases. | drug, clinical, diagnostic, test, rare, disease, molecule, gene, orphan, drug |
is used by: NIF Data Federation is used by: HmtPhenome is listed by: OMICtools is related to: Disease core ontology applied to Rare Diseases is related to: phenomeNET has parent organization: National Institute of Health and Medical Research; Rennes; France is parent organization of: Orphanet Rare Disease Ontology |
National Institute of Health and Medical Research ; Rennes ; France ; French Directorate General for Health ; European Union |
Free, Freely available | nif-0000-21306, grid.458406.b, Wikidata: Q1515833 | https://ror.org/03d3kf570 | SCR_006628 | 2026-08-10 09:32:53 | 474 | ||||||
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California National Primate Research Center Resource Report Resource Website 10+ mentions |
California National Primate Research Center (RRID:SCR_006426) | CNPRC | data or information resource, organization portal, portal | Center for investigators studying human health and disease, offering the opportunity to assess the causes of disease, and new treatment methods in nonhuman primate models that closely recapitulate humans. Its mission is to provide interdisciplinary programs in biomedical research on significant human health-related problems in which nonhuman primates are the models of choice. | NPRC, NPRC Consortium, ORIP, drug, genetic, animal, biology, cause, cell, cynamolous, developmental, disease, health, human, immunology, model, nonhuman primate, physiology, primate, procedure, psychology, reproductive, surgery, surgical, therapy, titi, treatment, veterinarian, virology |
is listed by: Biositemaps is listed by: National Primate Research Center Consortium has parent organization: University of California at Davis; California; USA is parent organization of: California National Primate Research Center Analytical and Resource Core |
NCRR P51 RR000169; NIH Office of the Director P51 OD011107; NIH Office of the Director U42 OD010990 |
Free, Freely available, | nif-0000-24356 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | http://www.cnprc.ucdavis.edu | SCR_006426 | 2026-08-10 09:32:50 | 21 | |||||
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CLEAVE Resource Report Resource Website 10+ mentions |
CLEAVE (RRID:SCR_007113) | CLEAVE | software application, data processing software, software resource | A UNIX-style command-line program which quickly computes multifactorial ANOVAs for very large data sets with minimal memory use (without loading all of the data into memory). It has been used for fMRI analysis, e.g. CLEAVE adds the following to the standard ANOVA analyses: # Unlimited numbers of factors can be analyzed. # Factor Correlation and Unequal Variance Corrections # Treatment Magnitudes: omega^2, partial eta^2, and R^2 # A convenient Ranking of Factors based upon treatment magnitudes and significance levels. # Post-Hoc Significance Tests # Post-Hoc Power Table to gauge how many subjects will be needed to achieve significance. # Allows the use of Random Factors. # A Configuration File to make the program more tunable # A Histogram and Cell Line Diagrams: which help the user to detect outliers. # Associated MATLAB functions: port CLEAVE-style data sets in or out of MATLAB. | c, console (text based), macos, microsoft, magnetic resonance, posix/unix-like, statistical operation |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Davis; California; USA |
Creative Commons Attribution License | nlx_155530 | http://www.nitrc.org/projects/cleave | SCR_007113 | 2026-08-10 09:33:02 | 17 | |||||||
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OwlSim Resource Report Resource Website 1+ mentions |
OwlSim (RRID:SCR_006819) | OwlSim | software application, data processing software, software resource | Software package that provides the ability to do a number of standard semantic similarity methods and includes novel methods for combining these with dynamic selection of anonymous grouping classes. Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible | functional similarity, semantic similarity, ontology, phenotype, annotation, windows, mac os x, linux, unix |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Berkeley Bioinformatics Open-Source Projects has parent organization: OWLTools |
Biomedical Information Science and Technology Initiative ; National Center for Biomedical Ontology ; NHGRI U54 HG004028; NHGRI HG002659 |
PMID:19956802 | Open unspecified license - Free for academic use | nlx_149312 | SCR_006819 | 2026-08-10 09:32:57 | 5 | ||||||
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WebApollo: A Web-Based Sequence Annotation Editor for Community Annotation Resource Report Resource Website 10+ mentions |
WebApollo: A Web-Based Sequence Annotation Editor for Community Annotation (RRID:SCR_005321) | WebApollo | production service resource, source code, service resource, software resource | WebApollo is an extensible web-based sequence annotation editor for community annotation. No software download is required and the annotations are saved to a centralized database with real-time annotation updating. (The edit server mediates annotation changes made by multiple users.) The Web based client uses JBrowse, is fast and highly interactive. WebApollo accesses many types of genomic data including access to public data from UCSC, Ensembl, and GMOD Chado databases. Source code (BSD License) * Client source code: https://github.com/berkeleybop/jbrowse * Annotation editing engine: http://code.google.com/p/apollo-web * Data model and I/O layer: http://code.google.com/p/gbol * Trellis server code: http://code.google.com/p/genomancer | sequence, annotation, genome |
has parent organization: Lawrence Berkeley National Laboratory has parent organization: University of California at Berkeley; Berkeley; USA has parent organization: Georgetown University; Washington D.C.; USA |
nlx_144381 | SCR_005321 | WebApollo - A Web-Based Sequence Annotation Editor for Community Annotation | 2026-08-10 09:32:31 | 13 | ||||||||
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BrainColor: Collaborative Open Labeling Online Resource Resource Report Resource Website 1+ mentions |
BrainColor: Collaborative Open Labeling Online Resource (RRID:SCR_006377) | BrainCOLOR | data or information resource, knowledge environment | This resource was created to host descriptions of protocols, definitions and rules for the reliable identification and localization of human brain anatomy and discussions of best practices in brain labeling. Project for manual anatomical labeling of human brain MRI data, and the visual presentation of labeled brain images. | atlas, curation, map, mapping, mri, image, brain, label, neurolabel, neuroanatomy |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Neuromorphometrics has parent organization: Columbia University; New York; USA |
NIMH R43 MH084358; NIMH MH084029 |
Free, Available for download, Freely available | nif-0000-07727 | https://www.binarybottle.com/braincolor/, https://github.com/binarybottle/braincolor | http://www.braincolor.org/ | SCR_006377 | Neurolabels, Collaborative Open Labeling Online Resource, Neuroanatomical Labeling Methods | 2026-08-10 09:32:49 | 3 |
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