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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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National Institute on Aging, Division of Neuroscience Resource Report Resource Website |
National Institute on Aging, Division of Neuroscience (RRID:SCR_008257) | portal, funding resource, topical portal, narrative resource, data or information resource | A funding resource that supports the research and training for understanding the structure and function of the aging nervous system, with an emphasis on studies involving Alzheimer's disease and age-related dementia. There is an emphasis on brain-behavior relationships. This program is composed of three branches: Neurobiology, Neuropsychology, and Dementias of Aging. The overall aim of this program is to understand the aging nervous system to minimize mental decline and improve the lives of older patients. This resource also includes links to sites for Alzheimer's disease (AD) studies that include: specimen repositories, genetic materials, bio-markers, data, policies on NIA and AD genetics sharing plans, and additional aging or other AD related links. | epidemiological, alzheimer's disease, brain, clinical, dementia, nervous system, neurobiology, neuropsychology, pathological, research, | Aging | R21-Exploratory/Development Grants ; NIH Neuroscience Blueprint initiatives |
nif-0000-22438 | http://www.nia.nih.gov/ResearchInformation/ExtramuralPrograms/NeuroscienceOfAging/ | SCR_008257 | NIA Division of Neuroscience, NIA DN, National Institute on Aging Division of Neuroscience, National Institute on Aging DN | 2026-08-04 09:42:05 | 0 | |||||||
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University of Southern California Brain Project Resource Report Resource Website 1+ mentions |
University of Southern California Brain Project (RRID:SCR_008044) | software resource, database, data or information resource | The USC Brain Project is engaged in the effort to develop new tools and methodologies for neuroinformatics in modeling neural mechanisms of visuomotor coordination and exploring the evolution of the human language-ready brain, as well as conducting work in both neural modeling and database construction in relation to rehabilitation after stroke. Sponsors: USCBP is funded by the University of Southern California. | brain, human, neural, neuroinformatics, stroke, visuomotor coordination, language | has parent organization: University of Southern California; Los Angeles; USA | nif-0000-10531 | http://neuroinformatics.usc.edu/mediawiki/index.php/Main_Page | SCR_008044 | USCBP | 2026-08-04 09:42:01 | 1 | ||||||||
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Integrative Neuroscience Initiative on Alcoholism Resource Report Resource Website |
Integrative Neuroscience Initiative on Alcoholism (RRID:SCR_008042) | INIA | portal, experimental protocol, topical portal, narrative resource, slide, data or information resource, bibliography | Consortium set out to identify the molecular, cellular, and behavioral neuroadaptations that occur in the brain reward circuits associated with the extended amygdala and its connections. It is hypothesized that genetic differences and/or neuroadaptations in this circuitry are responsible for the individual differences in vulnerability to the excessive consumption of alcohol. Chronic exposure to alcohol results in neuroadaptive phenomena, including tolerance, sensitization, dependence, withdrawal, loss of control of drinking, and relapse that contribute to the development of excessive alcohol consumption. The INIA has the following goals: 1) To establish animal models to study specific neurobiological targets for vulnerability that lead to excessive consumption of alcohol at the molecular, cellular and neural circuit level of analysis, 2) To identify specific clusters of genes whose expression is regulated by alcohol and which are responsible for any given model of excessive alcohol consumption using gene expression arrays, differential display, mutagenesis directed at specific brain areas, and the development of new informatics tools to analyze and interpret gene expression, cellular circuitry and brain circuitry data with the use of transgenic and knockout approaches, and 3) To attract new and innovative investigators to the field of alcohol research by recruiting individuals for development of U01 grants and pilot projects and by developing online interactive capacity among INIA scientists and others, and by making the neuroinformatics integrated data sets accessible, searchable and interactive with other databases for all scientists interested in alcoholism research. The structure of INIA is envisioned as two domains, Dependence-induced drinking and Binge drinking, comprised of multiple U01 research grants. The flow of information within each domain moves from molecular, to cellular, to neurocircuitry levels of analysis. These U01s share information with the core facilities, which act as data depositories. The Administrative Core coordinates the flow of information among the Domains and Cores and disseminates the information back to the U01s. A Pilot Project program will identify exciting new areas for research and the continual recruitment of new investigators to the alcohol field. The INIA program is directed by an Administrative Core in close cooperation with the Animal Models, Gene Array and Neurocircuitry Cores via a Steering Committee and with the continual advice of the Scientific Advisory Committee. | extended amygdala, gene array, gene expression, genes, genetic, alcoholism, alcohol research, animal models, binge drinking, brain, brain circuitry, cellular circuitry, dependence, dependence-induced drinking, drosophila, genotyping, grants, human, imaging, knockout, loss of control, mapping, methodologies, mouse, neural circuit, neuroadaptations, neurocircuitry, neuroinformatics, neuroscience, pilot, rat, relapse, reward circuits, rnai, sensitization, tolerance, transgenic, withdrawal |
has parent organization: Scripps Research Institute is parent organization of: INIA19 Primate Brain Atlas |
NIAAA | nif-0000-10258 | SCR_008042 | 2026-08-04 09:42:05 | 0 | ||||||||
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Sub-Volume Thresholding Analysis Resource Report Resource Website |
Sub-Volume Thresholding Analysis (RRID:SCR_008272) | SVT | data processing software, software application, software resource, data analysis software | Software tool for determining the statistically significant regions of activation in single or multi-subject human brain functional studies. It can be also applied to structural brain data for analyzing developmental, dementia and other changes of anatomy over time. This package was originally developed to work on Sun SPARC and SGI stations using the "C" language compiler provided by Sun/SGI as part of the standard system software. | data processing, data analysis, functional magnetic resonance imaging, fMRI, software, brain, brain functional studies |
is related to: Laboratory of Neuro Imaging has parent organization: University of Southern California; Los Angeles; USA |
NIBIB 9P41EB015922-15; NCRR 2-P41-RR-013642-15 |
Available for educational and research purposes only | nif-0000-23314 | SCR_008272 | 2026-08-04 09:42:05 | 0 | |||||||
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xjView: A Viewing Program For SPM Resource Report Resource Website 100+ mentions |
xjView: A Viewing Program For SPM (RRID:SCR_008642) | xjView | data processing software, data visualization software, software application, software resource | A viewing program for Statistical Parametric Mapping (SPM2, SPM5 and SPM8). p-value slider, displays multiple images at a time and can be used to build Region of Interest (ROI) masks. For a given region you can find the anatomical name and search the selected region in online database (wiki, Google scholar and PubMed). | f-test, brain, t-test, analyze, image display, linux, matlab, microsoft, magnetic resonance, nifti, os independent, posix/unix-like, visualization, windows, windows xp, statistical parametric mapping, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: SPM has parent organization: Stanford University; Stanford; California |
Free | nif-0000-32041 | http://www.nitrc.org/projects/xjview | SCR_008642 | xjView - a viewing tool for SPM | 2026-08-04 09:42:11 | 167 | ||||||
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Roadmap Epigenomics Project Resource Report Resource Website 100+ mentions |
Roadmap Epigenomics Project (RRID:SCR_008924) | Roadmap Epigenomics Project | portal, consortium, organization portal, project portal, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 11, 2022. Project for human epigenomic data from experimental pipelines built around next-generation sequencing technologies to map DNA methylation, histone modifications, chromatin accessibility and small RNA transcripts in stem cells and primary ex vivo tissues selected to represent normal counterparts of tissues and organ systems frequently involved in human disease. Consortium expects to deliver collection of normal epigenomes that will provide framework or reference for comparison and integration within broad array of future studies. Consortium is also committed to development, standardization and dissemination of protocols, reagents and analytical tools to enable research community to utilize, integrate and expand upon this body of data. | epigenomics, genome, genetic variation, gene regulation, genomics, stem cell, primary cell, tissue, blood, lung, heart, gastrointestinal tract, brain, embryonic stem cell, fetus, adult, cell, epigenome, methylome, chip-seq, rna, breast, muscle, connective, gastrointestinal, genitourinary, fat, hematopoietic stem cell, thymus, spleen, placenta, kidney, adrenal, induced pluripotent stem cell, skin, angular gyrus, anterior caudate, cingulate gyrus, hippocampus, inferior temporal lobe, mid frontal lobe, substantia nigra, dna methylation, histone modification, chromatin, rna transcript, dna, methylation, histone, data set |
is used by: NIF Data Federation is used by: VizHub is used by: Integrated Data Annotation is listed by: 3DVC is listed by: OMICtools is related to: NCBI Epigenomics is related to: Gene Expression Omnibus is related to: Spark is related to: Deep Blue Epigenomic Data Server has parent organization: NIH Common Fund is parent organization of: Human Epigenome Atlas is parent organization of: WashU Epigenome Browser is parent organization of: VizHub |
PMID:22690667 PMID:20944595 PMID:20944597 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151644, OMICS_01564 | SCR_008924 | Epigenomics Program, Common Fund Epigenomics, NIH Roadmap Epigenomics Program, NIH Roadmap Epigenomics Project, Common Fund Epigenomics Program, NIH Common Fund Epigenomics, NIH Common Fund Epigenomics Program, Common Fund Roadmap Epigenomics Program | 2026-08-04 09:42:14 | 310 | ||||||
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Johns Hopkins Alzheimer's Disease Research Center Resource Report Resource Website |
Johns Hopkins Alzheimer's Disease Research Center (RRID:SCR_008757) | biomaterial supply resource, brain bank, material resource, tissue bank | A Alzheimer's Disease Research Center (ADRC) whose goal is to conduct basic and clinical research aimed at understanding Alzheimer's disease. The Center enrolls a variety of individuals for clinical trials, evaluation and follow-up, including: normal control subjects, individuals with mild memory problems, and patients diagnosed with Alzheimer's Disease or related dementias. Researchers can request data and specimens obtained from ADRC subjects. These include blood or DNA, brain specimens, and cross-sectional or longitudinal clinical and cognitive data, all from ADRC subjects. | alzheimer's disease, mild memory problem, dementia, clinical data, cognitive data, blood, dna, brain, tissue, human, clinical trial, memory |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA |
Alzheimer's disease, Normal control, Mild memory problem, Dementia, Aging | NIA | Public, Researchers can request data and specimens obtained from ADRC subjects | nlx_144105 | SCR_008757 | Johns Hopkins ADRC, Johns Hopkins Alzheimer's Disease Research Center | 2026-08-04 09:42:12 | 0 | ||||||
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Brain Research Institute Biobank Resources Resource Report Resource Website |
Brain Research Institute Biobank Resources (RRID:SCR_008756) | biomaterial supply resource, brain bank, material resource, tissue bank | Brain bank resources which include postmortem human frozen brain tissue and matched cerebrospinal fluid (CSF) and blood available for scientists to search for etiopathogeneses of human disease. The National Neurological Research Specimen Bank and the Multiple Sclerosis Human Neurospecimen Bank maintains a collection of quick frozen and formalin fixed postmortem human brain tissue and frozen cerebrospinal fluid from patients with neurological diseases, including Alzheimer's Disease, amyotrophic lateral sclerosis, depressive disorder/suicide, and epilepsy, among others. Diagnoses are documented by clinical medical records and gross/microscopic neuropathology. The Neuropathology Laboratory at the UCLA Medical Center maintains a bank of frozen, formalin and paraformaldehyde-fixed and paraffin-embedded postmortem human brain tissues and frozen cerebrospinal fluid (CSF) from patients who die with Alzheimer's disease and other dementing and degenerative illnesses, as well as control materials removed in a similar fashion from patients who are neurologically normal. | postmortem, brain, coronal, brain tissue, cerebral spinal fluid, blood, cerebral spinal fluid cell, cell-free cerebral spinal fluid, serum, plasma, buffy coat, frozen, formalin fixed, paraformaldehyde-fixed, paraffin-embedded, neurological disease, alzheimer's disease, amyotrophic lateral sclerosis, depressive disorder, suicide, epilepsy, huntington's disease, multiple sclerosis, parkinson's disease, progressive supranuclear palsy, schizophrenia, stroke, cerebrovascular accident, fronto-temporal dementia, neurologically normal, coronal section, control, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Brain Research Institute |
Neurological disease, Alzheimer's disease, Amyotrophic Lateral Sclerosis, Depressive Disorder, Suicide, Epilepsy, Huntington's disease, Multiple Sclerosis, Parkinson's disease, Progressive Supranuclear Palsy, Schizophrenia, Stroke, Cerebrovascular Accident, Fronto-temporal dementia, Aging | NINDS ; NIMH ; National MS Society ; United States Department of Veterans Affairs ; Veterans Affairs West Los Angeles Healthcare Center ; NIA |
Public, Available to the research community | nlx_143996 | http://www.bri.ucla.edu/bri_research/research_resources.asp | SCR_008756 | Brain Research Institute Research Resources, Brain Research Institute Biobanks, BRI Research Resources, BRI Biobanks, BRI Biobank Resources | 2026-08-04 09:42:14 | 0 | |||||
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Mayo Clinic Jacksonville: Neuropathology and Microscopy Resource Report Resource Website 1+ mentions |
Mayo Clinic Jacksonville: Neuropathology and Microscopy (RRID:SCR_008753) | biomaterial supply resource, brain bank, material resource, tissue bank | A brain bank and laboratory focused on memory and motor disorders. Brains are sent to the laboratory for diagnosis and research for the State of Florida Alzheimer Disease Initiative and for the Society for Progressive Supranuclear Palsy. As part of this brain banking function, fixed and frozen brain samples are obtained at autopsy and sent to the laboratory for diagnostic evaluation and for various types of research studies. The major types of analyses performed on the brain samples include neuro-histology, immunohistochemistry, confocal microscopy, electron microscopy and image analysis, as well as immunoassays. The latter are based upon Western blotting and enzyme linked immunoassays. The laboratory has a specific interest in the interface between normal aging and Alzheimer's disease, as well as in non-Alzheimer's degenerative disorders such as Lewy body dementia, corticobasal degeneration, progressive supranuclear palsy and frontotemporal dementia. The primary focus of research on aging is neuropathologic characterization of brains of individuals who had been prospectively and longitudinally evaluated during life. These studies aim to determine differences in a range of biologic parameters in brains of people with normal cognitive, mild cognitive impairment and dementia. Their focus on Parkinson's disease is to identify preclinical Parkinson's disease in order to develop means for early diagnosis. | tissue, brain, fixed, frozen, alzheimer's disease, normal aging, memory disorder, motor disorder, parkinson's disease, progressive supranuclear palsy, lewy body disease, corticobasal degeneration, frontotemporal dementia, dementia, mild cognitive impairment, mouse, neurofibrillary degeneration, postmortem, normal control, autopsy |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Mayo Clinic Florida; Florida; USA has parent organization: Mayo Alzheimer's Disease Research Center has parent organization: Florida Alzheimer's Disease Research Center |
Alzheimer's disease, Aging, Memory disorder, Motor disorder, Parkinson's disease, Progressive Supranuclear Palsy, Lewy Body Disease, Corticobasal Degeneration, Frontotemporal dementia, Dementia, Mild Cognitive Impairment | NIA P50-AG16574; NIA P50-AG25711; NINDS P50-40256 |
nlx_143952 | SCR_008753 | Mayo Clinic Jacksonville: Neuropathology Microscopy, Mayo Clinic Florida: Neuropathology and Microscopy, Neuropathology and Microscopy - Dennis W. Dickson, Mayo Clinic Florida: Neuropathology and Microscopy - Dennis W. Dickson | 2026-08-04 09:42:13 | 1 | |||||||
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genes2mind Resource Report Resource Website 1+ mentions |
genes2mind (RRID:SCR_008872) | genes2mind | data analysis service, analysis service resource, production service resource, service resource, database, data or information resource | genes2mind is a tool for rapid exploratory analysis of psychotropic drug-induced gene expression in the brain. We present here an open resource containing comparison of effects of various classes of psychotropic drugs on transcriptional alterations of ~20,000 genes in the mouse brain (C57BL/6J). Data stored in the database include raw gene expression values as well as results of drug comparison. * Genomic Signature Identification section allows for the identification of drug-specific genomic signatures. * Genomic Signature Analysis section allows for further inspection and visualization of the signatures using multidimensional data analysis (PCA), co-expression analysis and heatmaps. * Single Gene Inspection allows for brief review of expression of specific candidate genes using barplots. | psychotropic drug, gene expression, gene, brain, drug, c57bl/6j, genomic | has parent organization: Polish Academy of Sciences Poznan; Poznan; Poland | Institute of Pharmacology PAS ; Polish Ministry of Science and Higher Education DeMeTer 3.1 POIG; Polish Ministry of Science and Higher Education NN405 274137; European Union FP6 GENADDICT LSHM-CT-2004-005166 |
nlx_149344 | SCR_008872 | 2026-08-04 09:42:14 | 3 | ||||||||
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Connectome Workbench Resource Report Resource Website 50+ mentions |
Connectome Workbench (RRID:SCR_008750) | CWB, wb_view, wb_command, wb_import | software resource, software toolkit, source code | Software brain visualization, analysis and discovery tool for fMRI and dMRI brain imaging data, including functional and structural connectivity data generated by the Human Connectome Project. Used to map brain imaging data. Allows for visualization of outputs from HCP pipelines from single subject, or average data from group of subjects and register that data onto standard brain atlas. | visualization, connectivity, brain, human, fMRI, dMRI, brain imaging data, map neuroimaging data, |
is used by: BRAIN Initiative Cell Atlas Network is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: FAIRsharing is related to: BALSA is related to: Washington University in St. Louis; Missouri; USA works with: ConnectomeDB works with: NIMP: Neuroanatomy-anchored Information Management Platform for Collaborative BICAN Data Generation |
NIH Blueprint for Neuroscience Research ; NIMH MH060974 |
Free, Available for download, Freely available | nlx_143924 | http://www.nitrc.org/projects/workbench, https://github.com/Washington-University/workbench, https://www.humanconnectome.org/software/workbench-command, https://www.humanconnectome.org/software/get-connectome-workbench, http://humanconnectome.org/connectome/connectome-workbench.html | SCR_008750 | 2026-08-04 09:42:12 | 56 | ||||||
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Human Connectome Coordination Facility Resource Report Resource Website 500+ mentions |
Human Connectome Coordination Facility (RRID:SCR_008749) | WU-Minn HCP | image repository, storage service resource, data repository, service resource | Consortium to comprehensively map long-distance brain connections and their variability. It is acquiring data and developing analysis pipelines for several modalities of neuroimaging data plus behavioral and genetic data from healthy adults. | brain, connectivity, adult human, mri, resting-state fmri, functional mri assay, neuroimaging, surface rendering, time domain analysis, tractography, xnat pipeline |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: FSL is related to: Brain Connectivity Toolbox is related to: FieldTrip is related to: BALSA has parent organization: Washington University in St. Louis; Missouri; USA has parent organization: NIH Human Connectome Project has parent organization: University of Minnesota Twin Cities; Minnesota; USA is parent organization of: WU-Minn HCP 500 Subjects MR and MEG Release |
healthy, twin | NIMH MH091657; NIH Blueprint for Neuroscience Research |
PMID:23684880 PMID:23702419 PMID:23668970 PMID:23702415 PMID:23702418 PMID:23707591 PMID:23702417 PMID:23684877 |
Free, Freely available | nlx_143922 | http://www.nitrc.org/projects/hcp_wuminn, http://www.humanconnectome.org/documentation/S500/ | SCR_008749 | HCP WU-Minn Consortium, WU-Minn: Human Connectome Project, HUMAN CONNECTOME PROJECT WU-Minn Consortium, WU-Minn Consortium: Human Connectome Project, WU-Minn Consortium: HCP | 2026-08-04 09:42:13 | 964 | |||
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BRAID Resource Report Resource Website 10+ mentions |
BRAID (RRID:SCR_008702) | BRAID | source code, software resource, image, database, data or information resource | Large-scale archive of normalized digital spatial and functional data with an analytical query mechanism. One of its many applications is the elucidation of brain structure-function relationships. BRAID stores spatially defined data from digital brain images which have been mapped into normalized Cartesian coordinates, allowing image data from large populations of patients to be combined and compared. The database also contains neurological data from each patient and a query mechanism that can perform statistical structure-function correlations. The project is developing database technology for the manipulation and analysis of 3-dimensional brain images derived from MRI, PET, CT, etc. BRAID is based on the PostgreSQL server, an object/relational DBMS, which allows a standard relational DBMS to be augmented with application-specific datatypes and operators. The BRAID project is adding operations and datatypes to support querying, manipulation and analysis of 3D medical images, including: * Image Datatypes: BRAID supports a family of 3D image datatypes, each having an abstract type and an implementation type. Abstract types include boolean (for regions of interest), integer, float, vector (for representing morphological changes), tensor (for representing derivatives and standard deviations of vector images) and color. Implementation types at present include line-segment format and voxel array. * Image Operators: BRAID supports addition of images, multiplication (which is interpreted as intersection for boolean images), coercion of an image''s abstract or implementation type to another value, and determination of volumes of regions of interest. * Statistical Operators: A chi-squared test has been added to SQL as an aggregate operator on pairs of boolean values. * Web Interface: A general-purpose Web gateway allows the results of queries that return computed images to be displayed. You can download the BRAID source code 2.0. This version is developed under postgreSQL 7.3.4., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | brain image, data mining, brain, magnetic resonance, analysis, image display, mri, pet, ct, structure, function, brain | has parent organization: University of Pennsylvania; Philadelphia; USA | Aging | NIA R01 AG13743 | PMID:18467275 PMID:11191696 PMID:9874539 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143545, r3d100010227 | https://doi.org/10.17616/R3F88M | SCR_008702 | BRAID: Brain Image Database, Brain Image Database | 2026-08-04 09:42:11 | 11 | |||
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Mount Sinai Alzheimer's Disease Research Center Resource Report Resource Website |
Mount Sinai Alzheimer's Disease Research Center (RRID:SCR_008780) | Mount Sinai ADRC | biomaterial supply resource, brain bank, material resource, tissue bank | A research facility and clinical program that is dedicated to the study and the treatment of both normal aging and Alzheimer's disease. This facility will accommodate requests for its resources (for example, data or tissue) from investigators that are not funded by the ADRC. Their team is composed of experts in geriatrics, geriatric psychiatry and psychology, neurology, pathology, and radiology. All team members work to provide services to those with memory disorders. This center sponsors educational programs for healthcare professionals and community groups. Data from the ADRC cores are available to all ADRC investigators after approval from the PI who collected the data. Data generated by the ADRC cores are communicated to the National Alzheimer's Coordinating Center (NACC) and can be available through them. Tissue can be distributed after approval of the Tissue Allocation Committee, and can be used for further research. | normal aging, alzheimer's disease, late adult human, memory disorder, memory, dementia, healthy, brain tissue, brain, tissue, paraffin embedded, block, stain, clinical |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
Alzheimer's disease, Aging, Healthy | NIA | Public / Collaborator: The ADRC at Mount Sinai School of Medicine is receptive to requests of ADRC resources (data, Tissue, And so on). The ADRC welcomes requests for tissue from Investigators not currently funded by the ADRC. Tissues needed for conduct of ADRC projects are distributed directly to PIs. Distribution of tissue will be made on a collaborative basis only and determined on a case by case basis by the Tissue Allocation Committee. | nlx_144162 | SCR_008780 | Mount Sinai School of Medicine ADRC, Mount Sinai School of Medicine Alzheimer's Disease Research Center, Mount Sinai Alzheimer's Disease Research Center | 2026-08-04 09:42:13 | 0 | |||||
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3DBar Resource Report Resource Website 1+ mentions |
3DBar (RRID:SCR_008896) | 3dBAR | analysis service resource, reference atlas, software resource, production service resource, service resource, atlas, data or information resource | Software package for reconstructing three-dimensional models of brain structures from 2-D delineations using a customizable and reproducible workflow. 3dBAR also works as an on-line service (http://service.3dbar.org) offering a variety of functions for the hosted datasets: * downloading reconstructions of desired brain structures in predefined quality levels in various supported formats as well as created using customizable settings, * previewing models as bitmap thumbnails and (for webGL enabled browsers) interactive manipulation (zooming, rotating, etc.) of the structures, * downloading slides from available datasets as SVG drawings. 3dBAR service can also be used by other websites or applications to enhance their functionality. * Operating System: Linux * Programming Language: Python * Supported Data Format: NIfTI-1, Other Format, VRML | 3d, reconstruction, brain structure, brain, algorithm or reusable library, web service, atlas application, three dimensional display, spinal cord, sensory system, waxholm space |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Scalable Brain Atlas is related to: Allen Mouse Brain Reference Atlas is related to: Waxholm Space is related to: Allen Institute for Brain Science has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland |
PMID:22227717 | GNU General Public License | nlx_151380 | http://www.nitrc.org/projects/bar3d, http://service.3dbar.org, http://www.3dbar.org:8080/, http://3dbar.org | SCR_008896 | 3D BAR, 3d Brain Atlas Reconstructor | 2026-08-04 09:42:14 | 5 | |||||
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Michigan Alzheimer's Disease Center Brain Bank Resource Report Resource Website |
Michigan Alzheimer's Disease Center Brain Bank (RRID:SCR_008774) | MADC | biomaterial supply resource, brain bank, material resource, tissue bank | An organization that provides scientists with human tissue from Alzheimer's patients and patients with related brain disorders. Brain tissue is collected from research studies at the University of Michigan, as well as other research centers, and are donated by the families of the patients or the participants themselves. Tissues that are present in the Brain Bank are pre-characterized by pathologists and can be provided to researchers upon request. | alzheimer's disease, dementia, late adult human, brain, tissue, brain tissue, autopsy, brain donation, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Michigan Alzheimer's Disease Center |
Alzheimer's disease, Dementia, Aging | Available to research staff upon request | nlx_144107 | http://www.med.umich.edu/alzheimers/research/brain_bank.htm | SCR_008774 | MADC Brain Bank | 2026-08-04 09:42:13 | 0 | |||||
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Institute for Basic Research in Developmental Disabilities Resource Report Resource Website |
Institute for Basic Research in Developmental Disabilities (RRID:SCR_008806) | IBR, NYS IBR, NYS-OPWDD IBR | biomaterial supply resource, brain bank, material resource, tissue bank | A research arm of the New York State Office for People with Developmental Disabilities (OPWDD), which conducts basic and clinical research into the causes, treatment, and prevention of intellectual disabilities and other developmental disabilities. The goals of the IBR's research, services and education program are designed to provide prevention, earlier detection, and improved treatment of intellectual disabilities and other developmental disabilities. This research program has a total of 46 laboratories over 7 departments. These programs include the George A. Jervis Clinic (a tertiary-level diagnostic and research clinic), the Specialty Clinical Laboratories (conduct specialty testing for genetic, metabolic, neurodegenerative disorders), and the Comprehensive Genetic Disease Program at Richmond County (provides genetics and genetic counseling services). This institute provides educational activities in the graduate studies program, and the Programs in Developmental Neuroscience and Developmental Disabilities (PDNDD). The PDNDD collaborates with the faculty from the City University of New York and the State University of New York. The IBR staff regularly conducts public education workshops and professional seminars about developmental disabilities. | brain tissue, brain, tissue, developmental disability, late adult human, alzheimer's disease, autism, fragile x syndrome, taurine, fetal alcohol syndrome, batten disease, phenylketonuria, fetal development, down's syndrome, infant, development, biochemistry, neurobiology, genetics, molecular biology, neurochemistry, psychology, neuroscience |
is listed by: One Mind Biospecimen Bank Listing has parent organization: NYS Office for People With Developmental Disabilities |
Developmental disability, Aging | nlx_144385 | http://www.opwdd.ny.gov/ws/ws_ibr_resources.jsp | SCR_008806 | NYS-OPWDD: Institute for Basic Research in Developmental Disabilities, New York State Institute for Basic Research in Developmental Disabilities | 2026-08-04 09:42:13 | 0 | ||||||
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UM Brain Endowment Bank Resource Report Resource Website |
UM Brain Endowment Bank (RRID:SCR_008721) | biomaterial supply resource, brain bank, material resource, tissue bank | A biomaterial supply resource which collects and disseminates over 1500 brains and links tissue specimens to patient data. The Brain Endowment Bank distributes brain tissue specimens to scientists worldwide who are investigating neurodegenerative and neuropsychiatric diseases, as well as to scientists involved in ongoing studies on the affects of aging. Its overall objective is to support basic and clinical research activities by providing a systematic method for obtaining detailed pre-mortem clinical information, developing procedures for optimizing brain autopsies, cryopreserving neuropathological specimens, and obtaining neuropathological diagnoses after death. | biomaterial resource, brain, brain tissue, brain bank, neurodegenerative disease, neuropsychiatric disease |
is listed by: One Mind Biospecimen Bank Listing is listed by: Multiple Sclerosis Discovery Forum is related to: One Mind Biospecimen Bank Listing is related to: Multiple Sclerosis Discovery Forum has parent organization: University of Miami Miller School of Medicine; Florida; USA |
Aging, Neurodegenerative disease, Neuropsychiatric disease | Public, To scientists worldwide who are investigating neurodegenerative and neuropsychiatric diseases, As well as to scientists studying aging | nlx_14288 | http://braindonation.org/ | SCR_008721 | University of Miami Brain Endowment Bank | 2026-08-04 09:42:13 | 0 | ||||||
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BrainU: The Neuroscience Teacher Institute Resource Report Resource Website 1+ mentions |
BrainU: The Neuroscience Teacher Institute (RRID:SCR_008677) | training resource, training material, narrative resource, workshop, data or information resource | A neuroscience training program for Minnesota students and teachers. It provides teachers with three years of neuroscience training, materials, and staff support to bring brain science to their students. In these professional workshops, participants receive updates on the latest in neuroscience research -- discussion is complemented with hands-on activities and lab work. Teachers also receive curriculum materials to aid them in using neuroscience topics in support of Minnesota Intermediate and Middle Level standards. The program was expanded in 2008 to include high school teachers. | brain, curriculum, laboratory, neuroscience, research, student, teacher | has parent organization: University of Minnesota Twin Cities; Minnesota; USA | SEDAPA ; National Center for Research Resources ; ARRA |
nif-0000-33707 | SCR_008677 | BrainU | 2026-08-04 09:42:11 | 1 | ||||||||
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MUSC Center on Aging Campbell Neuropathology Laboratory Resource Report Resource Website 1+ mentions |
MUSC Center on Aging Campbell Neuropathology Laboratory (RRID:SCR_008826) | MUSC Center on Aging Neuropathology Lab | biomaterial supply resource, brain bank, material resource, tissue bank | A brain bank and biospecimen repository that provides research materials to clinicians, scientists and pathologists in South Carolina. The bank provides both control and diseased biospecimens and brain tissue needed for research in Alzheimer's disease, Parkinson's disease and other related neurological disorders. The Campbell Laboratory coordinates the brain tissue donation program, provides post-mortem confirmation of a patient having neurological disorders, and leads research trials. Any South Carolina resident can choose to sign up as a tissue donor and have their brain tissue donated post-mortem to be used for neurological disorder research. The tissue bank will process and analyze these tissue samples and send the results to the deceased person's family. | brain tissue, brain, tissue, alzheimer's disease, parkinson's disease, neurological disorder, stroke, dementia, normal control, late adult human, clinical trial |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Medical University of South Carolina Center on Aging |
Alzheimer's disease, Parkinson's disease, Neurological disorder, Stroke, Aging, Dementia | Account required | nlx_144505 | http://academicdepartments.musc.edu/brainbank/ | SCR_008826 | MUSC Center on Aging Carroll A. Campbell Jr. Neuropathology Laboratory, Carroll A. Campbell Jr. Neuropathology Laboratory (Brain Bank), Medical University of South Carolina Center on Aging Carroll A. Campbell Jr. Neuropathology Laboratory, Carroll A. Campbell Jr. Neuropathology Laboratory at MUSC, Carroll A. Campbell Jr. Neuropathology Laboratory | 2026-08-04 09:42:13 | 2 |
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