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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
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MRM NeAt (Neurological Atlas) Mouse Brain Database Resource Report Resource Website 1+ mentions |
MRM NeAt (Neurological Atlas) Mouse Brain Database (RRID:SCR_007053) | MRM NeAt | atlas, data or information resource, database, image collection, reference atlas | Comprehensive three-dimensional digital atlas database of the C57BL/6J mouse brain based on magnetic resonance microscopy images acquired on a 17.6-T superconducting magnet. This database consists of: Individual MRI images of mouse brains; three types of atlases: individual atlases, minimum deformation atlases and probabilistic atlases; the associated quantitative structural information, such as structural volumes and surface areas. Quantitative group information, such as variations in structural volume, surface area, magnetic resonance microscopy image intensity and local geometry, have been computed and stored as an integral part of the database. The database augments ongoing efforts with other high priority strains as defined by the Mouse Phenome Database focused on providing a quantitative framework for accurate mapping of functional, genetic and protein expression patterns acquired by a myriad of technologies and imaging modalities. You must register First (Mandatory) and then you may Download Images and Data. | phenotype, mouse, brain, computational biology, in vivo, mouse brain atlas, magnetic resonance microscopy, mouse brain morphometry, image registration, in vitro, 3d brain atlas, adult mouse, male, c57bl/6j, autosegmentation, probabilistic atlas, t2 weighted protocol |
is related to: Mouse Brain Image Visualizer (MBIV) is related to: MRM NeAt (Neurological Atlas) Mouse Brain Database Image Gallery has parent organization: University of Florida; Florida; USA is parent organization of: MRM NeAt (Neurological Atlas) Mouse Brain Database Image Gallery |
National High Magnetic Field Laboratory ; NIBIB R01 EB 0023304; NCRR P41 RR16105; NIMH P50 MH58911 |
PMID:16165303 PMID:18958199 |
Registration required | nlx_59497 | http://brainatlas.mbi.ufl.edu | SCR_007053 | Magnetic Resonance Microimaging Neurological Atlas Mouse Brain Database, MRM Neurological Atlas Mouse Brain Database, C57BL/6J Mouse Atlas, Atlas of Adult C57BL/6J Mouse Brain, MRM NeAt Mouse Brain Database | 2026-09-19 12:51:23 | 8 | ||||
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SIU CADRD Dementia Brain Autopsy Program Resource Report Resource Website |
SIU CADRD Dementia Brain Autopsy Program (RRID:SCR_006918) | biomaterial supply resource, brain bank, material resource, tissue bank | A brain autopsy program developed to serve the needs of Illinois families and individuals affected by dementing diseases and to advance dementia research by providing tissue to researchers studying dementing diseases. The SIU School of Medicine (SIU-SM) Dementia Brain Autopsy Program facilitates the postmortem process for families wishing to obtain an autopsy for a loved one. A brain autopsy provides family members with accurate information regarding the exact nature of their relative's dementia. This includes information about the possibility of an inherited disorder which may affect other family members. The brain autopsy also helps clinicians improve their clinical skills by identifying the precise cause of the clinical dementia. | post mortem, autopsy, brain tissue, brain, tissue, dementia, dementing disease, alzheimer's disease |
is listed by: One Mind Biospecimen Bank Listing has parent organization: SIU Center for Alzheimer's Disease and Related Disorders |
Dementia, Dementing disease, Alzheimer's disease | The Dementia Brain Autopsy Program is on hold due to lack of funding, Check back periodically to see if the program has been re-instituted, Available to the research community | nlx_144049 | SCR_006918 | Dementia Brain Autopsy Program, SIU-SM Dementia Brain Autopsy Program, SIU School of Medicine Dementia Brain Autopsy Program, SIU Dementia Brain Autopsy Program | 2026-09-19 12:51:21 | 0 | |||||||
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NIH Human Connectome Project Resource Report Resource Website 10+ mentions |
NIH Human Connectome Project (RRID:SCR_006942) | HCP | consortium, data or information resource, organization portal, portal | Project to map the neural pathways that underlie human brain function for several modalities of neuroimaging data including fMRI. The purpose of the Project is to acquire and share data about the structural and functional connectivity of the human brain. It will greatly advance the capabilities for imaging and analyzing brain connections, resulting in improved sensitivity, resolution, and utility, thereby accelerating progress in the emerging field of human connectomics. Altogether, the Human Connectome Project will lead to major advances in the understanding of what makes us uniquely human and will set the stage for future studies of abnormal brain circuits in many neurological and psychiatric disorders. The sixteen institutes and centers of the NIH Blueprint for Neuroscience have funded two major grants that will take complementary approaches to deciphering the brain's amazingly complex wiring diagram. An 11-institution consortium led by Washington University in St. Louis and the University of Minnesota received a 5-year grant to enable development and utilization of advanced Magnetic Resonance Imaging (MRI) methods to chart brain circuitry. A consortium led by Massachusetts General Hospital and the University of California at Los Angeles received a grant to enable building and refining a next-generation 3T MR scanner that improves the quality and spatial resolution with which brain connectivity data can be acquired at this field strength. | brain, function, neural pathway, connectivity, human, community, data resource, eeg, meg, electrocorticography, funding resource, hardware, imaging genomics, knowledge environment, magnetic resonance, software, fmri |
is used by: DataLad is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: NIH Data Sharing Repositories is related to: NIH Data Sharing Repositories is related to: BCBtoolkit has parent organization: National Institutes of Health is parent organization of: MGH-USC Human Connectome Project is parent organization of: Human Connectome Coordination Facility |
NIH Blueprint for Neuroscience Research | nlx_143921 | http://www.nitrc.org/projects/hcp | SCR_006942 | Human Connectome Project, Human Connectome Project (HCP) | 2026-09-19 12:51:21 | 13 | ||||||
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Digital Anatomist Interactive Atlases Project Resource Report Resource Website 1+ mentions |
Digital Anatomist Interactive Atlases Project (RRID:SCR_007060) | DAP Interactive Atlases | atlas, data or information resource, narrative resource, training material | Atlases of human brain, thoracic viscera and knee designed for teaching gross anatomy. Also provides a neuroanatomy Interactive syllabus, suitable as a laboratory guide, with an instructive caption accompanying each image and interactive quizzes. The Digital Anatomist Project is motivated by the belief that anatomy is the basis of all the biomedical sciences (including clinical medicine). Manifestations of health and disease can be regarded as attributes of anatomical structures ranging in size from molecules to body parts. Therefore DAP''s goal is to represent anatomy in a comprehensive and consistent way, which should meet the needs of all biomedical applications that require anatomical knowledge. DAP has pursued two parallel tracks for representing anatomical information: 1. The generation of graphical models derived from cadaver and clinical imaging data; and 2. Symbolic modeling of the structures and relationships that constitute the human body. It''s initial work with graphical representations of anatomy provided the impetus and motivation for the National Library of Medicine to establish the Visible Human Project, and it''s symbolic modeling has enhanced NLM''s Unified Medical Language System in order to represent deep anatomical knowledge. In collaboration with the knowledge systems group at Stanford, it has now created a very large knowledge base which provides the foundation for the machine-based intelligence needed to remotely interact with biomedical image data. | brain atlas, anatomy, biomedical, body, cell, medicine, model, neuroanatomy, brain, quiz, 2d, 3d, cadaver section, mri, computer reconstruction, mri scan, tissue section, pathway, topography, development, vessel, ventricle, spinal cord, brainstem, cranial nerve, sensory system, motor system, cerebellum, basal ganglia, eye movement, hypothalamus, limbic system, cortical connection, forebrain, thoracic organ, knee | has parent organization: University of Washington; Seattle; USA | nif-0000-10207 | SCR_007060 | Digital Anatomist Project Interactive Atlases | 2026-09-19 12:51:23 | 3 | ||||||||
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Whole Brain Catalog Resource Report Resource Website 1+ mentions |
Whole Brain Catalog (RRID:SCR_007011) | WBC | data repository, image repository, service resource, simulation software, software application, software resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 26, 2016. An open source, downloadable, 3d atlas of the mouse brain and its cellular constituents that allows multi-scale data to be visualized in a seamless way, similar to Google earth. Data within the Catalog is marked up with annotations and can link out to additional data sources via a semantic framework. This next generation open environment has been developed to connect members of the neuroscience community to facilitate solutions for today's intractable challenges in brain research through cooperation and crowd sourcing. The client-server platform provides rich 3-D views for researchers to zoom in, out, and around structures deep in a multi-scale spatial framework of the mouse brain. An open-source, 3-D graphics engine used in graphics-intensive computer gaming generates high-resolution visualizations that bring data to life through biological simulations and animations. Within the Catalog, researchers can view and contribute a wide range of data including: * 3D meshes of subcellular scenes or brain region territories * Large 2D image datasets from both electron and light level microscopy * NeuroML and Neurolucida neuronal reconstructions * Protein Database molecular structures Users of the Whole Brain Catalog can: * Fit data of any scale into the international standard atlas coordinate system for spatial brain mapping, the Waxholm Space. * View brain slices, neurons and their animation, neuropil reconstructions, and molecules in appropriate locations * View data up close and at a high resolution * View their own data in the Whole Brain Catalog environment * View data within a semantic environment supported by vocabularies from the Neuroscience Information Framework (NIF) at http://www.neuinfo.org. * Contribute code and connect personal tools to the environment * Make new connections with related research and researchers 5 Easy Ways to Explore: * Explore the datasets across multiple scales. * View data closely at high resolution. * Observe accurately simulated neurons. * Readily search for content. * Contribute your own research. | crowd sourcing, mouse, brain, cell, neuron, simulation, microscopy, neuroscience, electron microscopy, light microscopy, bioinformatics, neuroinformatics, computational biology, biology, visualization, animation, molecular structure, neuronal reconstruction, subcellular, annotation |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is related to: NeuroLex is related to: Cell Centered Database is related to: Neuroscience Information Framework is related to: INCF Software Center has parent organization: University of California at San Diego; California; USA is parent organization of: Whole Brain Catalog Blog is parent organization of: WholeBrainCatalog's Channel - YouTube |
Waitt Family Foundation | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-23345 | http://www.nitrc.org/projects/incf_whole-brai | SCR_007011 | 2026-09-19 12:51:22 | 5 | ||||||
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xjView: A Viewing Program For SPM Resource Report Resource Website 100+ mentions |
xjView: A Viewing Program For SPM (RRID:SCR_008642) | xjView | data processing software, data visualization software, software application, software resource | A viewing program for Statistical Parametric Mapping (SPM2, SPM5 and SPM8). p-value slider, displays multiple images at a time and can be used to build Region of Interest (ROI) masks. For a given region you can find the anatomical name and search the selected region in online database (wiki, Google scholar and PubMed). | f-test, brain, t-test, analyze, image display, linux, matlab, microsoft, magnetic resonance, nifti, os independent, posix/unix-like, visualization, windows, windows xp, statistical parametric mapping, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: SPM has parent organization: Stanford University; Stanford; California |
Free | nif-0000-32041 | http://www.nitrc.org/projects/xjview | SCR_008642 | xjView - a viewing tool for SPM | 2026-09-19 12:51:43 | 170 | ||||||
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BRAID Resource Report Resource Website 10+ mentions |
BRAID (RRID:SCR_008702) | BRAID | data or information resource, database, image, software resource, source code | Large-scale archive of normalized digital spatial and functional data with an analytical query mechanism. One of its many applications is the elucidation of brain structure-function relationships. BRAID stores spatially defined data from digital brain images which have been mapped into normalized Cartesian coordinates, allowing image data from large populations of patients to be combined and compared. The database also contains neurological data from each patient and a query mechanism that can perform statistical structure-function correlations. The project is developing database technology for the manipulation and analysis of 3-dimensional brain images derived from MRI, PET, CT, etc. BRAID is based on the PostgreSQL server, an object/relational DBMS, which allows a standard relational DBMS to be augmented with application-specific datatypes and operators. The BRAID project is adding operations and datatypes to support querying, manipulation and analysis of 3D medical images, including: * Image Datatypes: BRAID supports a family of 3D image datatypes, each having an abstract type and an implementation type. Abstract types include boolean (for regions of interest), integer, float, vector (for representing morphological changes), tensor (for representing derivatives and standard deviations of vector images) and color. Implementation types at present include line-segment format and voxel array. * Image Operators: BRAID supports addition of images, multiplication (which is interpreted as intersection for boolean images), coercion of an image''s abstract or implementation type to another value, and determination of volumes of regions of interest. * Statistical Operators: A chi-squared test has been added to SQL as an aggregate operator on pairs of boolean values. * Web Interface: A general-purpose Web gateway allows the results of queries that return computed images to be displayed. You can download the BRAID source code 2.0. This version is developed under postgreSQL 7.3.4., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | brain image, data mining, brain, magnetic resonance, analysis, image display, mri, pet, ct, structure, function, brain | has parent organization: University of Pennsylvania; Philadelphia; USA | Aging | NIA R01 AG13743 | PMID:18467275 PMID:11191696 PMID:9874539 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143545, r3d100010227 | https://doi.org/10.17616/R3F88M | SCR_008702 | BRAID: Brain Image Database, Brain Image Database | 2026-09-19 12:51:44 | 11 | |||
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UM Brain Endowment Bank Resource Report Resource Website |
UM Brain Endowment Bank (RRID:SCR_008721) | biomaterial supply resource, brain bank, material resource, tissue bank | A biomaterial supply resource which collects and disseminates over 1500 brains and links tissue specimens to patient data. The Brain Endowment Bank distributes brain tissue specimens to scientists worldwide who are investigating neurodegenerative and neuropsychiatric diseases, as well as to scientists involved in ongoing studies on the affects of aging. Its overall objective is to support basic and clinical research activities by providing a systematic method for obtaining detailed pre-mortem clinical information, developing procedures for optimizing brain autopsies, cryopreserving neuropathological specimens, and obtaining neuropathological diagnoses after death. | biomaterial resource, brain, brain tissue, brain bank, neurodegenerative disease, neuropsychiatric disease |
is listed by: One Mind Biospecimen Bank Listing is listed by: Multiple Sclerosis Discovery Forum is related to: One Mind Biospecimen Bank Listing is related to: Multiple Sclerosis Discovery Forum has parent organization: University of Miami Miller School of Medicine; Florida; USA |
Aging, Neurodegenerative disease, Neuropsychiatric disease | Public, To scientists worldwide who are investigating neurodegenerative and neuropsychiatric diseases, As well as to scientists studying aging | nlx_14288 | http://braindonation.org/ | SCR_008721 | University of Miami Brain Endowment Bank | 2026-09-19 12:51:44 | 0 | ||||||
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BrainU: The Neuroscience Teacher Institute Resource Report Resource Website 1+ mentions |
BrainU: The Neuroscience Teacher Institute (RRID:SCR_008677) | data or information resource, narrative resource, training material, training resource, workshop | A neuroscience training program for Minnesota students and teachers. It provides teachers with three years of neuroscience training, materials, and staff support to bring brain science to their students. In these professional workshops, participants receive updates on the latest in neuroscience research -- discussion is complemented with hands-on activities and lab work. Teachers also receive curriculum materials to aid them in using neuroscience topics in support of Minnesota Intermediate and Middle Level standards. The program was expanded in 2008 to include high school teachers. | brain, curriculum, laboratory, neuroscience, research, student, teacher | has parent organization: University of Minnesota Twin Cities; Minnesota; USA | SEDAPA ; National Center for Research Resources ; ARRA |
nif-0000-33707 | SCR_008677 | BrainU | 2026-09-19 12:51:44 | 1 | ||||||||
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MassGeneral Institute for Neurodegenerative Disease Resource Report Resource Website 1+ mentions |
MassGeneral Institute for Neurodegenerative Disease (RRID:SCR_008746) | MIND | biomaterial supply resource, brain bank, material resource, tissue bank | An institute whose mission is to translate laboratory discoveries into prevention, treatment and cures for Alzheimer's, ALS, Huntington's, Parkinson's and other neurodegenerative diseases. MIND seeks to accelerate therapies that lessen the toll of disease on patients and families. Researchers of the institute collaborate, strategize, and share technology to find treatment for these diseases. As promising leads are developed in one area, they are tested in the other neurodegenerative disorders. | memory disorder, movement disorder, neuromuscular disease, alzheimer's disease, amyotrophic lateral sclerosis, huntington's disease, parkinson's disease, neurodegenerative disease, brain tissue, tissue, brain |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Harvard Medical School; Massachusetts; USA |
Memory disorder, Movement disorder, Neuromuscular Disease, Alzheimer's disease, Amyotrophic Lateral Sclerosis, Huntington's disease, Parkinson's disease, Neurodegenerative disease, Aging | Available to the research community | nlx_144103 | http://www.massgeneral.org/mind/ | SCR_008746 | Massachusetts General Institute for Neurodegenerative Disease, Massachusetts General Hospital Institute for Neurodegenerative Disease | 2026-09-19 12:51:44 | 2 | |||||
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Johns Hopkins Alzheimer's Disease Research Center Resource Report Resource Website |
Johns Hopkins Alzheimer's Disease Research Center (RRID:SCR_008757) | biomaterial supply resource, brain bank, material resource, tissue bank | A Alzheimer's Disease Research Center (ADRC) whose goal is to conduct basic and clinical research aimed at understanding Alzheimer's disease. The Center enrolls a variety of individuals for clinical trials, evaluation and follow-up, including: normal control subjects, individuals with mild memory problems, and patients diagnosed with Alzheimer's Disease or related dementias. Researchers can request data and specimens obtained from ADRC subjects. These include blood or DNA, brain specimens, and cross-sectional or longitudinal clinical and cognitive data, all from ADRC subjects. | alzheimer's disease, mild memory problem, dementia, clinical data, cognitive data, blood, dna, brain, tissue, human, clinical trial, memory |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA |
Alzheimer's disease, Normal control, Mild memory problem, Dementia, Aging | NIA | Public, Researchers can request data and specimens obtained from ADRC subjects | nlx_144105 | SCR_008757 | Johns Hopkins ADRC, Johns Hopkins Alzheimer's Disease Research Center | 2026-09-19 12:51:44 | 0 | ||||||
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Brain Research Institute Biobank Resources Resource Report Resource Website |
Brain Research Institute Biobank Resources (RRID:SCR_008756) | biomaterial supply resource, brain bank, material resource, tissue bank | Brain bank resources which include postmortem human frozen brain tissue and matched cerebrospinal fluid (CSF) and blood available for scientists to search for etiopathogeneses of human disease. The National Neurological Research Specimen Bank and the Multiple Sclerosis Human Neurospecimen Bank maintains a collection of quick frozen and formalin fixed postmortem human brain tissue and frozen cerebrospinal fluid from patients with neurological diseases, including Alzheimer's Disease, amyotrophic lateral sclerosis, depressive disorder/suicide, and epilepsy, among others. Diagnoses are documented by clinical medical records and gross/microscopic neuropathology. The Neuropathology Laboratory at the UCLA Medical Center maintains a bank of frozen, formalin and paraformaldehyde-fixed and paraffin-embedded postmortem human brain tissues and frozen cerebrospinal fluid (CSF) from patients who die with Alzheimer's disease and other dementing and degenerative illnesses, as well as control materials removed in a similar fashion from patients who are neurologically normal. | postmortem, brain, coronal, brain tissue, cerebral spinal fluid, blood, cerebral spinal fluid cell, cell-free cerebral spinal fluid, serum, plasma, buffy coat, frozen, formalin fixed, paraformaldehyde-fixed, paraffin-embedded, neurological disease, alzheimer's disease, amyotrophic lateral sclerosis, depressive disorder, suicide, epilepsy, huntington's disease, multiple sclerosis, parkinson's disease, progressive supranuclear palsy, schizophrenia, stroke, cerebrovascular accident, fronto-temporal dementia, neurologically normal, coronal section, control, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Brain Research Institute |
Neurological disease, Alzheimer's disease, Amyotrophic Lateral Sclerosis, Depressive Disorder, Suicide, Epilepsy, Huntington's disease, Multiple Sclerosis, Parkinson's disease, Progressive Supranuclear Palsy, Schizophrenia, Stroke, Cerebrovascular Accident, Fronto-temporal dementia, Aging | NINDS ; NIMH ; National MS Society ; United States Department of Veterans Affairs ; Veterans Affairs West Los Angeles Healthcare Center ; NIA |
Public, Available to the research community | nlx_143996 | http://www.bri.ucla.edu/bri_research/research_resources.asp | SCR_008756 | Brain Research Institute Research Resources, Brain Research Institute Biobanks, BRI Research Resources, BRI Biobanks, BRI Biobank Resources | 2026-09-19 12:51:44 | 0 | |||||
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Mayo Clinic Jacksonville: Neuropathology and Microscopy Resource Report Resource Website 1+ mentions |
Mayo Clinic Jacksonville: Neuropathology and Microscopy (RRID:SCR_008753) | biomaterial supply resource, brain bank, material resource, tissue bank | A brain bank and laboratory focused on memory and motor disorders. Brains are sent to the laboratory for diagnosis and research for the State of Florida Alzheimer Disease Initiative and for the Society for Progressive Supranuclear Palsy. As part of this brain banking function, fixed and frozen brain samples are obtained at autopsy and sent to the laboratory for diagnostic evaluation and for various types of research studies. The major types of analyses performed on the brain samples include neuro-histology, immunohistochemistry, confocal microscopy, electron microscopy and image analysis, as well as immunoassays. The latter are based upon Western blotting and enzyme linked immunoassays. The laboratory has a specific interest in the interface between normal aging and Alzheimer's disease, as well as in non-Alzheimer's degenerative disorders such as Lewy body dementia, corticobasal degeneration, progressive supranuclear palsy and frontotemporal dementia. The primary focus of research on aging is neuropathologic characterization of brains of individuals who had been prospectively and longitudinally evaluated during life. These studies aim to determine differences in a range of biologic parameters in brains of people with normal cognitive, mild cognitive impairment and dementia. Their focus on Parkinson's disease is to identify preclinical Parkinson's disease in order to develop means for early diagnosis. | tissue, brain, fixed, frozen, alzheimer's disease, normal aging, memory disorder, motor disorder, parkinson's disease, progressive supranuclear palsy, lewy body disease, corticobasal degeneration, frontotemporal dementia, dementia, mild cognitive impairment, mouse, neurofibrillary degeneration, postmortem, normal control, autopsy |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Mayo Clinic Florida; Florida; USA has parent organization: Mayo Alzheimer's Disease Research Center has parent organization: Florida Alzheimer's Disease Research Center |
Alzheimer's disease, Aging, Memory disorder, Motor disorder, Parkinson's disease, Progressive Supranuclear Palsy, Lewy Body Disease, Corticobasal Degeneration, Frontotemporal dementia, Dementia, Mild Cognitive Impairment | NIA P50-AG16574; NIA P50-AG25711; NINDS P50-40256 |
nlx_143952 | SCR_008753 | Mayo Clinic Jacksonville: Neuropathology Microscopy, Mayo Clinic Florida: Neuropathology and Microscopy, Neuropathology and Microscopy - Dennis W. Dickson, Mayo Clinic Florida: Neuropathology and Microscopy - Dennis W. Dickson | 2026-09-19 12:51:44 | 1 | |||||||
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genes2mind Resource Report Resource Website 1+ mentions |
genes2mind (RRID:SCR_008872) | genes2mind | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | genes2mind is a tool for rapid exploratory analysis of psychotropic drug-induced gene expression in the brain. We present here an open resource containing comparison of effects of various classes of psychotropic drugs on transcriptional alterations of ~20,000 genes in the mouse brain (C57BL/6J). Data stored in the database include raw gene expression values as well as results of drug comparison. * Genomic Signature Identification section allows for the identification of drug-specific genomic signatures. * Genomic Signature Analysis section allows for further inspection and visualization of the signatures using multidimensional data analysis (PCA), co-expression analysis and heatmaps. * Single Gene Inspection allows for brief review of expression of specific candidate genes using barplots. | psychotropic drug, gene expression, gene, brain, drug, c57bl/6j, genomic | has parent organization: Polish Academy of Sciences Poznan; Poznan; Poland | Institute of Pharmacology PAS ; Polish Ministry of Science and Higher Education DeMeTer 3.1 POIG; Polish Ministry of Science and Higher Education NN405 274137; European Union FP6 GENADDICT LSHM-CT-2004-005166 |
nlx_149344 | SCR_008872 | 2026-09-19 12:51:46 | 3 | ||||||||
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Connectome Workbench Resource Report Resource Website 50+ mentions |
Connectome Workbench (RRID:SCR_008750) | CWB, wb_view, wb_command, wb_import | software resource, software toolkit, source code | Software brain visualization, analysis and discovery tool for fMRI and dMRI brain imaging data, including functional and structural connectivity data generated by the Human Connectome Project. Used to map brain imaging data. Allows for visualization of outputs from HCP pipelines from single subject, or average data from group of subjects and register that data onto standard brain atlas. | visualization, connectivity, brain, human, fMRI, dMRI, brain imaging data, map neuroimaging data, |
is used by: BRAIN Initiative Cell Atlas Network is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: FAIRsharing is related to: BALSA is related to: Washington University in St. Louis; Missouri; USA works with: ConnectomeDB works with: NIMP: Neuroanatomy-anchored Information Management Platform for Collaborative BICAN Data Generation |
NIH Blueprint for Neuroscience Research ; NIMH MH060974 |
Free, Available for download, Freely available | nlx_143924 | http://www.nitrc.org/projects/workbench, https://github.com/Washington-University/workbench, https://www.humanconnectome.org/software/workbench-command, https://www.humanconnectome.org/software/get-connectome-workbench, http://humanconnectome.org/connectome/connectome-workbench.html | SCR_008750 | 2026-09-19 12:51:44 | 95 | ||||||
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Human Connectome Coordination Facility Resource Report Resource Website 1000+ mentions |
Human Connectome Coordination Facility (RRID:SCR_008749) | WU-Minn HCP | data repository, image repository, service resource, storage service resource | Consortium to comprehensively map long-distance brain connections and their variability. It is acquiring data and developing analysis pipelines for several modalities of neuroimaging data plus behavioral and genetic data from healthy adults. | brain, connectivity, adult human, mri, resting-state fmri, functional mri assay, neuroimaging, surface rendering, time domain analysis, tractography, xnat pipeline |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: FSL is related to: Brain Connectivity Toolbox is related to: FieldTrip is related to: BALSA has parent organization: Washington University in St. Louis; Missouri; USA has parent organization: NIH Human Connectome Project has parent organization: University of Minnesota Twin Cities; Minnesota; USA is parent organization of: WU-Minn HCP 500 Subjects MR and MEG Release |
healthy, twin | NIH Blueprint for Neuroscience Research ; NIMH MH091657 |
PMID:23684880 PMID:23702419 PMID:23668970 PMID:23702415 PMID:23702418 PMID:23707591 PMID:23702417 PMID:23684877 |
Free, Freely available | nlx_143922 | http://www.nitrc.org/projects/hcp_wuminn, http://www.humanconnectome.org/documentation/S500/ | SCR_008749 | HCP WU-Minn Consortium, WU-Minn: Human Connectome Project, HUMAN CONNECTOME PROJECT WU-Minn Consortium, WU-Minn Consortium: Human Connectome Project, WU-Minn Consortium: HCP | 2026-09-19 12:51:44 | 1095 | |||
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Mount Sinai Alzheimer's Disease Research Center Resource Report Resource Website |
Mount Sinai Alzheimer's Disease Research Center (RRID:SCR_008780) | Mount Sinai ADRC | biomaterial supply resource, brain bank, material resource, tissue bank | A research facility and clinical program that is dedicated to the study and the treatment of both normal aging and Alzheimer's disease. This facility will accommodate requests for its resources (for example, data or tissue) from investigators that are not funded by the ADRC. Their team is composed of experts in geriatrics, geriatric psychiatry and psychology, neurology, pathology, and radiology. All team members work to provide services to those with memory disorders. This center sponsors educational programs for healthcare professionals and community groups. Data from the ADRC cores are available to all ADRC investigators after approval from the PI who collected the data. Data generated by the ADRC cores are communicated to the National Alzheimer's Coordinating Center (NACC) and can be available through them. Tissue can be distributed after approval of the Tissue Allocation Committee, and can be used for further research. | normal aging, alzheimer's disease, late adult human, memory disorder, memory, dementia, healthy, brain tissue, brain, tissue, paraffin embedded, block, stain, clinical |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
Alzheimer's disease, Aging, Healthy | NIA | Public / Collaborator: The ADRC at Mount Sinai School of Medicine is receptive to requests of ADRC resources (data, Tissue, And so on). The ADRC welcomes requests for tissue from Investigators not currently funded by the ADRC. Tissues needed for conduct of ADRC projects are distributed directly to PIs. Distribution of tissue will be made on a collaborative basis only and determined on a case by case basis by the Tissue Allocation Committee. | nlx_144162 | SCR_008780 | Mount Sinai School of Medicine ADRC, Mount Sinai School of Medicine Alzheimer's Disease Research Center, Mount Sinai Alzheimer's Disease Research Center | 2026-09-19 12:51:45 | 0 | |||||
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3DBar Resource Report Resource Website 1+ mentions |
3DBar (RRID:SCR_008896) | 3dBAR | analysis service resource, atlas, data or information resource, production service resource, reference atlas, service resource, software resource | Software package for reconstructing three-dimensional models of brain structures from 2-D delineations using a customizable and reproducible workflow. 3dBAR also works as an on-line service (http://service.3dbar.org) offering a variety of functions for the hosted datasets: * downloading reconstructions of desired brain structures in predefined quality levels in various supported formats as well as created using customizable settings, * previewing models as bitmap thumbnails and (for webGL enabled browsers) interactive manipulation (zooming, rotating, etc.) of the structures, * downloading slides from available datasets as SVG drawings. 3dBAR service can also be used by other websites or applications to enhance their functionality. * Operating System: Linux * Programming Language: Python * Supported Data Format: NIfTI-1, Other Format, VRML | 3d, reconstruction, brain structure, brain, algorithm or reusable library, web service, atlas application, three dimensional display, spinal cord, sensory system, waxholm space |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Scalable Brain Atlas is related to: Allen Mouse Brain Reference Atlas is related to: Waxholm Space is related to: Allen Institute for Brain Science has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland |
PMID:22227717 | GNU General Public License | nlx_151380 | http://www.nitrc.org/projects/bar3d, http://service.3dbar.org, http://www.3dbar.org:8080/, http://3dbar.org | SCR_008896 | 3D BAR, 3d Brain Atlas Reconstructor | 2026-09-19 12:51:46 | 5 | |||||
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Michigan Alzheimer's Disease Center Brain Bank Resource Report Resource Website |
Michigan Alzheimer's Disease Center Brain Bank (RRID:SCR_008774) | MADC | biomaterial supply resource, brain bank, material resource, tissue bank | An organization that provides scientists with human tissue from Alzheimer's patients and patients with related brain disorders. Brain tissue is collected from research studies at the University of Michigan, as well as other research centers, and are donated by the families of the patients or the participants themselves. Tissues that are present in the Brain Bank are pre-characterized by pathologists and can be provided to researchers upon request. | alzheimer's disease, dementia, late adult human, brain, tissue, brain tissue, autopsy, brain donation, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Michigan Alzheimer's Disease Center |
Alzheimer's disease, Dementia, Aging | Available to research staff upon request | nlx_144107 | http://www.med.umich.edu/alzheimers/research/brain_bank.htm | SCR_008774 | MADC Brain Bank | 2026-09-19 12:51:45 | 0 | |||||
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Institute for Basic Research in Developmental Disabilities Resource Report Resource Website |
Institute for Basic Research in Developmental Disabilities (RRID:SCR_008806) | IBR, NYS IBR, NYS-OPWDD IBR | biomaterial supply resource, brain bank, material resource, tissue bank | A research arm of the New York State Office for People with Developmental Disabilities (OPWDD), which conducts basic and clinical research into the causes, treatment, and prevention of intellectual disabilities and other developmental disabilities. The goals of the IBR's research, services and education program are designed to provide prevention, earlier detection, and improved treatment of intellectual disabilities and other developmental disabilities. This research program has a total of 46 laboratories over 7 departments. These programs include the George A. Jervis Clinic (a tertiary-level diagnostic and research clinic), the Specialty Clinical Laboratories (conduct specialty testing for genetic, metabolic, neurodegenerative disorders), and the Comprehensive Genetic Disease Program at Richmond County (provides genetics and genetic counseling services). This institute provides educational activities in the graduate studies program, and the Programs in Developmental Neuroscience and Developmental Disabilities (PDNDD). The PDNDD collaborates with the faculty from the City University of New York and the State University of New York. The IBR staff regularly conducts public education workshops and professional seminars about developmental disabilities. | brain tissue, brain, tissue, developmental disability, late adult human, alzheimer's disease, autism, fragile x syndrome, taurine, fetal alcohol syndrome, batten disease, phenylketonuria, fetal development, down's syndrome, infant, development, biochemistry, neurobiology, genetics, molecular biology, neurochemistry, psychology, neuroscience |
is listed by: One Mind Biospecimen Bank Listing has parent organization: NYS Office for People With Developmental Disabilities |
Developmental disability, Aging | nlx_144385 | http://www.opwdd.ny.gov/ws/ws_ibr_resources.jsp | SCR_008806 | NYS-OPWDD: Institute for Basic Research in Developmental Disabilities, New York State Institute for Basic Research in Developmental Disabilities | 2026-09-19 12:51:45 | 0 |
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