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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Rutgers Cell and DNA Repository Resource Report Resource Website 10+ mentions |
Rutgers Cell and DNA Repository (RRID:SCR_010624) | RUCDR | biomaterial supply resource, cell repository, material resource | RUCDR is a biobank and a service organization that maintains human blood, serum, saliva, tissue and the genetic products derived from those. Services include technical consultation and logistical support for biobanking. Researchers can order biomaterials and apply for phenotypic / genotypic data. | genetics, disease, phenotypic data, genotypic data, cell, dna, blood, cell line |
is listed by: One Mind Biospecimen Bank Listing is related to: NIMH Repository and Genomics Resources has parent organization: Rutgers University; New Jersey; USA is parent organization of: NIMH Stem Cell Center |
Researchers can order biomaterials and apply for phenotypic / genotypic data, Depending on the project. | nlx_60990 | SCR_010624 | Rutgers Cell DNA Repository, Rutgers University Cell DNA Repository | 2026-08-11 09:42:17 | 37 | |||||||
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Hunt Biobank Resource Report Resource Website 50+ mentions |
Hunt Biobank (RRID:SCR_010626) | HUNT Biobank | biomaterial supply resource, cell repository, material resource | International biobank storing whole blood and DNA from 200,000 individuals, serum and plasma samples from more than 100,000 individuals as well as urine, RNA tubes, cells, buffy coat and Na-heparin tubes for environmental analysis for as many as 50,000 individuals. All bio-specimens from the HUNT surveys are collected, processed and stored at the HUNT Biobank in Levanger. The National CONOR Biobank is located on the same site, where it serves as a central research repository for DNA samples from all the largest Norwegian health surveys. These make up the Cohorts of Norway (CONOR), which include samples from more than 200,000 individuals. * HUNT 1 was carried out in 1984-1986 to establish the health history of 75,000 people. * HUNT 2, carried out in 1995-1997, focused on the evolution of the health history of 74,000 people. This included blood sample collection from 65,000 people. The data that accompany biospecimens in the biobank are stored in secured computer systems that run complex database management and analysis software. * HUNT 3 was completed in June 2008. 93,210 people were invited to participate in the study, and as of the 6th of June, 2008, 48,289 people participated (52% participation rate). The data, collected by means of questionnaires, interviews, clinical examinations and collection of blood and urine samples, will be ready for analysis in January 2009. * Young-HUNT is the adolescent part of HUNT including participants aged 13-19 years. Young-HUNT1 (1995-97) was conducted as part of HUNT2, 9141 adolescents participated (90% response rate). Young-HUNT2 (2000-01) was a follow-up study of Young-HUNT1, 2400 students participated in both studies (77% of the invited). Young-HUNT3 (2006-08) was a new cross-sectional study as part of HUNT3. This time 8677 adolescents participated (87% response rate). Data collection included self-reported questionnaires, structured interviews, clinical measurements and, in Young-HUNT3, buccal smears. All institutions with research expertise can apply for access to analyze HUNT data. Projects must have recommendations from The Regional Committee for Medical Research in Norway (REK) and be registered with The Norwegian Social Science Data Services (NSD). | longitudinal study, population, health, environment, whole blood, dna, serum, plasma, urine, rna, cell, buffy coat, na-heparin, blood, medical history, family medical history, adolescent, self-reported questionnaire, structured interview, clinical measurement, buccal smear, analysis, adult, adolescent, aging, FASEB list |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Norwegian University of Science and Technology; Trondheim; Norway |
nlx_57833 | http://www.huntbiosciences.com/default.asp?Valgt=Ja&Mode=Meny&MenyID=41&HovedMenyID=41&Hovedmeny=HUNT+Biobank | SCR_010626 | Nord-Tr��������ndelag health study Biobank, Nord-Trondelag health study, HUNT Databank | 2026-08-11 09:42:06 | 50 | |||||||
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MCID Analysis Resource Report Resource Website 10+ mentions |
MCID Analysis (RRID:SCR_014278) | software application, data processing software, image analysis software, software resource | Software designed to provide an image analysis software solution for offline analysis of images, ideally for the analysis of images where image capture is not required. Available applications for MCID Analysis include gel/blot analysis, fluorescence microscopy, and stereology. | image analysis software, offline image analysis, image capture | is affiliated with: MCID Core | Must file a "Request Information" form to receive more details | SCR_014278 | 2026-08-11 09:42:48 | 16 | ||||||||||
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SMIA-CUKIE Resource Report Resource Website 1+ mentions |
SMIA-CUKIE (RRID:SCR_014795) | SMIA | software application, data processing software, image analysis software, software resource | Software used to analyze and quantify images stained with multiple fluorophores in vitro or in vivo. It can output both image and value outputs. | immunofluorescence, image analysis software, fluorophore, image output, value output, bulk process, bulk analyze | DOI:10.5772/21699 | Requires Python 2.7 | SCR_014795 | Simultaneous Multichannel Immunofluorescence Digital Imaging Analyzer, Simultaneous Multichannel Immunofluorescence Analysis | 2026-08-11 09:42:56 | 7 | ||||||||
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ERP PCA Toolkit Resource Report Resource Website 1+ mentions |
ERP PCA Toolkit (RRID:SCR_013105) | ERP PCA Toolkit | software application, data processing software, software resource, software toolkit | This Matlab toolkit is a general purpose tool for editing, visualizing, and analyzing EEG data (both Event Related Potential - ERP and spectral) whose most recent version has been downloaded over 1000 times. Its three chief highlights are: 1) an optimized automatic artifact correction function that includes ICA correction for eye blinks and saccades. 2) Extensive support for easily conducting PCA and ICA through all stages of the procedure, including inspection of reconstituted waveforms and batch ANOVAs. 3) Implementation of robust ANOVAs, including McCarthy-Wood vector test. It has a graphical user interface for point and click usage and comes with an extensive illustrated tutorial. A description of the toolkit was published in Dien (2010) in Journal of Neuroscience Methods. It relies on both internal functions as well as borrowed functions from both EEGlab and FieldTrip. | eeg, meg, electrocorticography, matlab, visualization | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License v2 | nlx_155753 | http://www.nitrc.org/projects/erppcatoolkit | SCR_013105 | 2026-08-11 09:42:33 | 6 | |||||||
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National Centers for Biomedical Computing Resource Report Resource Website 1+ mentions |
National Centers for Biomedical Computing (RRID:SCR_010635) | NCBC | data or information resource, portal, organization portal | The NCBCs are a set of networked computation core facilities for biomedical infrastructure funded under the NIH Common Fund, the National Program of Excellence in Biomedical Computing (NPEBC). There are seven funded Centers that cover systems biology, image processing, biophysical modeling, biomedical ontologies, information integration, and tools for gene-phenotype and disease analysis. The centers will create innovative software programs and other tools that enable the biomedical community to integrate, analyze, model, simulate, and share data on human health and disease. Each Center has Cores that are focused on (1) computational science, (2) biomedical computational science and (3) driving biological projects whose intent is to drive the interaction between computational and biomedical computational science. In addition to the Centers, the NIH has a number of active program announcements to develop collaborations with the biomedical research community��this includes announcements from the Biomedical Information Science and Technology Initiative (BISTI) and the Program for Collaborations with National Centers for Biomedical Computing. There are numerous efforts in education and training that emanate from the Centers and there is an annual all hands meeting. | nih (common fund) |
is related to: iDASH is related to: iTools is related to: Center for Computational Biology at UCLA is related to: i2b2 Research Data Warehouse is related to: Informatics for Integrating Biology and the Bedside is related to: National Alliance for Medical Image Computing is related to: Simbios is related to: National Center for Biomedical Ontology is related to: National Center for Integrative Biomedical Informatics is related to: MAGNet - Multiscale Analysis of Genomic and Cellular Networks is related to: iDASH has parent organization: National Institutes of Health is parent organization of: Biositemaps is parent organization of: National Center for Biomedical Ontology is parent organization of: Biomedical Resource Ontology is parent organization of: National Alliance for Medical Image Computing is parent organization of: NCBO Annotator |
NIH | nlx_62048 | SCR_010635 | NIH Roadmap National Centers for Biomedical Computing | 2026-08-11 09:42:12 | 1 | |||||||
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ShapePopulationViewer Resource Report Resource Website 1+ mentions |
ShapePopulationViewer (RRID:SCR_014167) | software application, data processing software, image analysis software, software resource | Software that allows users to dynamically interact with multiple surfaces simultaneously. It is very useful for visualisation and comparison of 3D surfaces by also displaying their scalars or vectors attributes stored in the points, and allowing the user to simply modify the colormap. ShapePopulationViewer is available as an extension of 3D Slicer. | 3d surface, colormap, vector, interaction |
is used by: 3D Slicer is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
Available to the research community | SCR_014167 | 2026-08-11 09:42:45 | 3 | ||||||||||
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JISC Resource Report Resource Website 50+ mentions |
JISC (RRID:SCR_011331) | data or information resource, government granting agency, portal, funding resource | Joint Information Systems Committee (JISC) is the UK''s expert on information and digital technologies for education and research. JISC inspires UK colleges and universities in the innovative use of digital technologies, helping to maintain the UK''s position as a global leader in education. JISC helps institutions make best use of technology to manage all aspects of their business. JISC provides access to the world-class Janet (UK) network, quality digital resources and a range of specialist advisory services. JISC provides: * A world-class network - JANET * Access to electronic resources * New environments for learning, teaching and research * Guidance on institutional change * Advisory and consultancy services * Regional support - JISC RSCs Partnerships JISC develops partnerships to enable the UK education and research communities to engage in national and global collaborations to overcome the challenges of delivering world-class ICT solutions and services. Funding Opportunities JISC funds a wide range of infrastructure, services, innovative projects and studies. A large number of these originate from a successful response to a grant funding call (previously known as a JISC Circular), inviting eligible HE and FE institutions to bid for project funding. JISC also procures other activities (usually studies such as an evaluation or market research), through invitations to tender which are available to other organizations to bid against. JISC is the name of our organization. Historically, it stood for Joint Information Systems Committee. |
is parent organization of: JISC Blog is parent organization of: Webtracks |
nlx_23596 | SCR_011331 | Joint Information Systems Committee | 2026-08-11 09:42:18 | 59 | ||||||||||
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CombineZP Resource Report Resource Website 100+ mentions |
CombineZP (RRID:SCR_014567) | software application, data processing software, image analysis software, software resource | A software used to process stacks of digital images. All of the resulting images are processed to have the same dimensions and then are consolidated into a single image. | digital image, dimension, process stack, digital, dimension modification, image processing, image consolidation | Open Source | SCR_014567 | 2026-08-11 09:42:48 | 137 | |||||||||||
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nanoprobes.com Resource Report Resource Website 100+ mentions |
nanoprobes.com (RRID:SCR_014323) | reagent supplier, material resource | A nanoparticle research collaborative which engineers nanoparticle products in order to find cures for cancer and other diseases. The gold labels produced are uncharged molecules which are cross-linked to specific sites on biomolecules. Labels can be attached to any molecule with a reactive group (proteins, peptides, oligonucleotides, small molecules and lipids) for detection and localization. New probes can be engineered based on any fragment of a naturally occurring biomolecule, and the label can be positioned away from the binding site so it does not interfere with binding. | chemical supplier, nanoparticle, gold label, biomolecule | Pay for product | SCR_014323 | Nanoprobes | 2026-08-11 09:42:48 | 209 | ||||||||||
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NIST Mass Spectrometry Data Center Resource Report Resource Website 100+ mentions |
NIST Mass Spectrometry Data Center (RRID:SCR_014680) | data or information resource, portal, organization portal | A data center that develops evaluated mass spectral libraries and provides related software tools that assist compound identification by providing reference mass spectra for GC/MS (by electron ionization) and LC-MS/MS (by tandem mass spectrometry). It also provides gas phase retention indices for GC. Resources include the mass spectral library, the peptide library, and a standard refernece material guide. | metabolomics, metabolomics tool, peptide, mass spectrometry, compound identification, data center, portal | is listed by: Metabolomics Workbench | https://www.nist.gov/mml/biomolecular-measurement/mass-spectrometry-data-center | SCR_014680 | Mass Spectrometry Data Center, NIST MS Data Center, MS Data Center | 2026-08-11 09:42:51 | 108 | |||||||||
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seq-annot Resource Report Resource Website 1+ mentions |
seq-annot (RRID:SCR_018731) | software toolkit, standalone software, software resource, software application | Software Python package for annotating and counting genomic features in genomes and metagenomes. Software tools to facilitate annotation and comparison of genomes and metagenomes. | Annotating, counting, comparison, genomic feature, genome, metagenome, metagenomics, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:seq-annot | https://bio.tools/seq-annot | SCR_018731 | 2026-08-11 09:44:00 | 1 | ||||||||
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DirectOverlay Resource Report Resource Website 1+ mentions |
DirectOverlay (RRID:SCR_018978) | software application, data processing software, image analysis software, software resource | Software package for display of light microscopy images together with atomic force microscopy images. | Light microscopy, light microscopy image, atomic force microscopy, image, atomic force, microscopy | Restricted | SCR_018978 | 2026-08-11 09:43:51 | 1 | |||||||||||
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Apache Spark Resource Report Resource Website 10+ mentions |
Apache Spark (RRID:SCR_016557) | software application, data processing software, software resource, data analytics software | Software tool as a unified analytics engine for large scale data processing. An open source distributed general purpose cluster computing framework. | unified, analytics, engine, large, scale, data, processing |
is related to: VariantSpark is related to: spark-xml is related to: spark-xml-utils is related to: SparkFHE has parent organization: University of California at Berkeley; Berkeley; USA |
DOI:10.1145/2934664 | Free, Available for download, Freely available | SCR_016557 | 2026-08-11 09:43:19 | 43 | |||||||||
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WinRHIZO Resource Report Resource Website 10+ mentions |
WinRHIZO (RRID:SCR_017120) | software application, data processing software, image analysis software, software resource | Software toolbox for image analysis by Regent Instruments Inc. Used for root measurement in different forms like morphology, topology, architecture and color analyses. Automatically or interactively analyses washed roots. | image, analysis, root, measurement, plant, morphology, topology, color, Regent Instruments Inc. | Available for purchase | SCR_017120 | 2026-08-11 09:43:37 | 16 | |||||||||||
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autoPROC Resource Report Resource Website 100+ mentions |
autoPROC (RRID:SCR_015748) | software toolkit, data processing software, software resource, software application | Data processing software for X-ray diffraction data. autoPROC is a set of tools and programs to automate steps involved in data processing, such as image analysis, integration, indexing, and determination. | xray, diffraction, data processing, crystallography | European Commission LSHG-CT-2003-503420 | PMID:21460447 | Free for academic use, Available for download | SCR_015748 | 2026-08-11 09:43:11 | 330 | |||||||||
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Studylog Resource Report Resource Website 1+ mentions |
Studylog (RRID:SCR_016682) | data or information resource, portal, organization portal, service resource | Commerciall organization to develop study protocols collaboratively to run and manage animal research studies for academic, government, biotech and pharmaceutical labs. Provides services, including product installation and configuration, user training, customization services and ongoing support. | develop, study, protocol, collaborative, animal, research | SCR_016682 | 2026-08-11 09:43:21 | 5 | ||||||||||||
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QuASIMoDOH Resource Report Resource Website 1+ mentions |
QuASIMoDOH (RRID:SCR_018708) | QuASIMoDOH | software application, data processing software, image analysis software, software resource | Software tool to describe spatial patterns in degrees of inhomogeneity and to incorporate intensity based correction to analyze images with wide range of resolutions. Can be used to assess protein and lipid patterns, quantifying distribution changes and spatial reorganization at cell surface. | is a plug in for: ImageJ | Hercules foundation | PMID:27603951 | SCR_018708 | Quantitative Analysis of Spatial distributions in Images using Mosaic segmentation and Dual parameter Optimization in Histograms | 2026-08-11 09:44:00 | 1 | ||||||||
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Agilent: 4200 TapeStation System Resource Report Resource Website 50+ mentions |
Agilent: 4200 TapeStation System (RRID:SCR_018435) | instrument resource | Benchtop genetic analyzer. Electrophoresis system for DNA and RNA sample quality control. It can be used for next generation sequencing or Biobank workflow. | Benchtop Genetic Analyzer, Instrument, Equipment, Agilent, USEDit, Next Generation Sequencing, ABRF, NGS | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018435.pdf | Model_Number_4200 TapeStation, , SCR_018444, SCR_019398, SCR_019395 | https://www.agilent.com/cs/library/datasheets/public/5991-6029EN.pdf | SCR_018435 | , Agilent 4200 Tapestation Genetic Analyzer, Agilent 4200 TapeStation | 2026-08-11 09:43:45 | 63 | |||||||
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Fluorescent Imaging Analysis Software FIMAS Resource Report Resource Website 1+ mentions |
Fluorescent Imaging Analysis Software FIMAS (RRID:SCR_018311) | FIMAS | software application, data processing software, image analysis software, software resource | Software tool to perform basic and specific analysis procedures on fluorescent microscopy and fluorescent lifetime imaging microscopy data. Requires MATLAB with image processing and statistical toolboxes. Can import fluorescent data from Olympus, Biorad, Femtonics, TIFF, Excel, ASCII files. | Analysis procedure, fluorescent microscopy, fluorescent imaging, microscopy data, image processing, fluorescent data | uses: MATLAB | Free, Freely available | SCR_018311 | 2026-08-11 09:43:57 | 3 |
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