Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
TraceDrawer Resource Report Resource Website 10+ mentions |
TraceDrawer (RRID:SCR_025782) | software resource | Software for evaluating, comparing and presenting real-time interaction data. Used for quantification of kinetics and affinity through curve fitting, with large number of binding models to choose from. Can extract experimental information from measurement, requiring minimal user input. | kinetics, affinity, analysis, evaluating, comparing, presenting, real-time interaction data, | Restricted | SCR_025782 | 2026-09-12 01:04:52 | 18 | |||||||||||
|
AtomicJ Resource Report Resource Website 1+ mentions |
AtomicJ (RRID:SCR_026023) | data analysis software, data processing software, image analysis software, software application, software resource | Software application for analysis of force microscopy recordings, including images and force curves. Allows for fast and reliable processing of single force curves and force maps, providing estimation of mechanical properties of sample. | force microscopy recordings, images, force curves, analysis, single force curves processing, force maps processing, | European Union structural funds ; Polish Ministry of Science and Higher Education |
PMID:24985823 | Free, Freely available, | SCR_026023 | 2026-09-12 01:04:56 | 4 | |||||||||
|
Seattle Childrens Research Institute Behavioral Phenotyping Core Facility Resource Report Resource Website 1+ mentions |
Seattle Childrens Research Institute Behavioral Phenotyping Core Facility (RRID:SCR_026371) | BPC | access service resource, core facility, service resource | Core dedicated to the protocol driven collection, analysis, and reporting of behavioral data using a blend of classic and innovative assays. Supports neuroscience, psychology, pharmacology, genetics, cancer, and development by providing advanced tools and expertise for the precise measurement and interpretation of behavior. | ABRF, precise measurement, interpretation of behavior, collection, analysis, reporting, behavioral data, |
is listed by: ABRF CoreMarketplace has parent organization: Seattle Childrens Research Institute; Washington; USA |
ABRF_3036 | https://coremarketplace.org/?FacilityID=3036&citation=1 | SCR_026371 | , Seattle Childrens Research Institute Behavioral Phenotyping Core, Behavioral Phenotyping Core | 2026-09-12 01:05:03 | 1 | |||||||
|
singleCellTK Resource Report Resource Website 1+ mentions |
singleCellTK (RRID:SCR_026813) | SCTK | software resource, software toolkit | Software R package provides interface to popular tools for importing, quality control, analysis, and visualization of single cell RNA-seq data. Allows users to integrate tools from various packages at different stages of analysis workflow. | importing, quality control, analysis, visualization, single cell RNA-seq data, | Free, Available for download, Freely available | https://www.camplab.net/sctk/ | SCR_026813 | Single Cell ToolKit | 2026-09-12 01:05:12 | 3 | ||||||||
|
University of Connecticut Advanced Light Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Connecticut Advanced Light Microscopy Core Facility (RRID:SCR_027547) | access service resource, core facility, service resource | Facility provides training and access to advanced light microscopy systems at an hourly rate. In addition, we are available to consult with and support users at every stage of a project including: experimental design, sample preparation, image acquisition, analysis, and data preparation. | ABRF, advanced light microscopy, microscopy, experimental design, sample preparation, image acquisition, analysis, data preparation, |
is listed by: ABRF CoreMarketplace has parent organization: University of Connecticut; Connecticut; USA |
ABRF_5546 | https://https://coremarketplace.org/?FacilityID=5546&citation=1 | SCR_027547 | , University of Connecticut Advanced Light Microscopy Facility, Advanced Light Microscopy Facility | 2026-09-12 01:05:30 | 2 | ||||||||
|
Michigan Technological University Materials Characterization and Fabrication Core Facility Resource Report Resource Website |
Michigan Technological University Materials Characterization and Fabrication Core Facility (RRID:SCR_027872) | access service resource, core facility, service resource | Core facility provides tools for imaging, analysis, environmental testing, and micro/nanofabrication. Offers data, expertise, and hands-on training. From advanced materials to environmental systems, MCFF is the hub where discovery meets precision. | ABRF, imaging, analysis, environmental testing, micro, nano, fabrication |
uses: Asylum Research: MFP-3D-BIO Atomic Force Microscope uses: Thermo Fisher: Apreo 2 FE-SEM Electron Microscope is listed by: ABRF CoreMarketplace has parent organization: Michigan Technological University; Houghton; USA |
Open | ABRF_5732 | https://https://coremarketplace.org/?FacilityID=5732&citation=1 | SCR_027872 | , Materials Characterization and Fabrication Facility(MCFF), Michigan Technological University Materials Characterization and Fabrication Facility(MCFF) | 2026-09-12 01:05:38 | 0 | |||||||
|
Cornell University Chemistry MS Core Facility Resource Report Resource Website 1+ mentions |
Cornell University Chemistry MS Core Facility (RRID:SCR_028079) | access service resource, core facility, service resource | Core specializes in the analysis of small organic and organometallic analytes. Provides access to mass spectrometers for all. | ABRF, analysis, organic, organometallic, analytes |
is listed by: ABRF CoreMarketplace has parent organization: Cornell University; New York; USA |
Open | ABRF_5812 | https://https://coremarketplace.org/?FacilityID=5812&citation=1 | SCR_028079 | Cornell University Chemistry MS Facility | 2026-09-12 01:05:43 | 1 | |||||||
|
Roswell Park Comprehensive Cancer Center Biostatistics and Statistical Genomics Shared Resource BSGSR Core Facility Resource Report Resource Website |
Roswell Park Comprehensive Cancer Center Biostatistics and Statistical Genomics Shared Resource BSGSR Core Facility (RRID:SCR_028371) | access service resource, core facility, service resource | Core offers services in design, oversight, implementation, analysis, publication, and reporting of scientific studies including articulating study objectives and hypotheses, grant writing, conceiving appropriate cost-effective designs and models for achievement of study objectives, monitoring interim and final analyses, and co-authoring abstracts and manuscripts. | ABRF, services, design, oversight, implementation, analysis, publication, reporting of scientific studies |
is listed by: ABRF CoreMarketplace has parent organization: Roswell Park Comprehensive Cancer Center |
ABRF_5904 | https://https://coremarketplace.org/?FacilityID=5904&citation=1 | SCR_028371 | Biostatistics & Statistical Genomics Shared Resource (BSGSR) | 2026-09-12 01:05:49 | 0 | ||||||||
|
University of California Davis DataLab Core Facility Resource Report Resource Website |
University of California Davis DataLab Core Facility (RRID:SCR_028941) | access service resource, core facility, service resource | Core supports data-enabled research through training, advising, and collaboration in data science, covering topics like research design, data access, analysis, visualization, reproducibility, ethics, and use of tools and methods in the areas of machine learning, bioinformatics, HPC, and open-source software. | ABRF, data, training, advising, collaboration in data science, research design, data access, analysis, visualization, reproducibility, ethics, |
is listed by: ABRF CoreMarketplace has parent organization: University of California at Davis; California; USA |
ABRF_6189 | https://coremarketplace.org/RRID:SCR_028941/?citation=1 | SCR_028941 | UC Davis DataLab | 2026-09-12 01:06:03 | 0 | ||||||||
|
Connectome Mapping Toolkit Resource Report Resource Website 10+ mentions |
Connectome Mapping Toolkit (RRID:SCR_001644) | Connectome Mapping Toolkit | data management software, data or information resource, data processing software, data set, image analysis software, image processing software, software application, software resource, software toolkit | A Python-based open source toolkit for magnetic resonance connectome mapping, data management, sharing, visualization and analysis. The toolkit includes the connectome mapper (a full DMRI processing pipeline), a new file format for multi modal data and metadata, and a visualization application. | magnetic resonance, connectome, mapping, data management, data sharing, visualization, analysis, connectome mapper, processing pipeline, python, connectomics, multi-modal, network analysis, neuroimaging, neuroinformatics tool, mri, knowledge-base, semantic, technology, mapping, source code |
is related to: Diffusion MRI of Traumatic Brain Injury has parent organization: University of Lausanne; Lausanne; Switzerland has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland is parent organization of: Connectome Viewer |
Swiss National Science Foundation 33CM30-124089 | PMID:21713110 | Free, Available for download, Freely available | nlx_153920 | http://www.cmtk.org/, http://www.connectome.ch/ | SCR_001644 | 2026-09-12 12:55:28 | 10 | |||||
|
Diffusion Tensor Imaging ToolKit Resource Report Resource Website 10+ mentions |
Diffusion Tensor Imaging ToolKit (RRID:SCR_001642) | DTI-TK | data processing software, image analysis software, software application, software resource, software toolkit | A spatial normalization and atlas construction toolkit optimized for examining white matter morphometry using DTI data with special care taken to respect the tensorial nature of the data. It implements a state-of-the-art registration algorithm that drives the alignment of white matter (WM) tracts by matching the orientation of the underlying fiber bundle at each voxel. The algorithm has been shown to both improve WM tract alignment and to enhance the power of statistical inference in clinical settings. A 2011 study published in NeuroImage ranks DTI-TK the top-performing tool in its class. Key features include: * open standard-based file IO support: NIfTI format for scalar, vector and tensor image volumes * tool chains for manipulating tensor image volumes: resampling, smoothing, warping, registration & visualization * pipelines for WM morphometry: spatial normalization & atlas construction for population-based studies * built-in cluster-computing support: support for open source Sun Grid Engine (SGE) * Interoperability with other popular DTI tools: AFNI, Camino, FSL & DTIStudio * Interoperability with ITK-SNAP: support multi-modal visualization and segmentation | dti, visualization, segmentation, resampling, smoothing, warping, registration, spatial normalization, atlas construction, analysis, atlas application, intersubject, image-to-template, analyze, nifti-1, macos, linux |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Diffusion MRI of Traumatic Brain Injury is related to: Camino is related to: MRI Studio has parent organization: University of Pennsylvania; Philadelphia; USA has parent organization: SourceForge |
NIBIB 1R03EB009321-01 | Free, Available for download, Freely available | nlx_153914 | http://www.nitrc.org/projects/dtitk | SCR_001642 | 2026-09-12 12:55:28 | 25 | ||||||
|
Brainstorm Resource Report Resource Website 500+ mentions |
Brainstorm (RRID:SCR_001761) | Brainstorm | data analysis software, data processing software, data visualization software, software application, software resource | Software as collaborative, open source application dedicated to analysis of brain recordings: MEG, EEG, fNIRS, ECoG, depth electrodes and animal invasive neurophysiology. User-Friendly Application for MEG/EEG Analysis. | MEG, EEG, data, magnetoencephalography, electroencephalography, visualization, processing, analysis, brain, recording, fNIRS, ECoG, electrophysiology |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: OpenMEEG is related to: Open MEG Archive is related to: MATLAB has parent organization: University of Southern California; Los Angeles; USA |
CNRS ; McGill University ; NIBIB R01 EB000473; NIBIB R01 EB002010; NIBIB R01 EB009048; NIBIB R01 EB026299 |
PMID:21584256 | Free, Available for download, Freely available | nif-0000-10267 | http://www.nitrc.org/projects/bst, https://github.com/brainstorm-tools/brainstorm3 | SCR_001761 | brainstorm3 | 2026-09-12 12:55:30 | 622 | ||||
|
SeqMonk Resource Report Resource Website 500+ mentions |
SeqMonk (RRID:SCR_001913) | SeqMonk | software resource | Software tool to visualize and analyse high throughput mapped sequence data. | java, high throughput sequencing, mapped, visualization, analysis |
is listed by: OMICtools has parent organization: Babraham Institute |
Free, Available for download, Freely available | OMICS_01936 | http://www.bioinformatics.babraham.ac.uk/projects/seqmonk/ | SCR_001913 | 2026-09-12 12:55:34 | 631 | |||||||
|
NeuroMorph Resource Report Resource Website 10+ mentions |
NeuroMorph (RRID:SCR_002091) | NeuroMorph | software resource | A toolset for the morphometric analysis and visualization of 3D models derived from electron microscopy image stacks. It is designed to import, analyze, and visualize mesh models. It has been designed specifically for the morphological analysis of 3D objects derived from serial electron microscopy images of brain tissue, although much of its functionality can be applied to any 3D mesh. These models can be generated by software that allows the images to be segmented so that 3D objects can be built. These objects can be generated by any 3D image segmentation software, such as ilastik or Fiji. The NeuroMorph toolset has been developed as a set of add-ons for Blender, a widely used free and open source 3D modeling software package. | electron microscopic imaging assay, morphometry, analysis, visualization, 3d |
is related to: Blender has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland |
Free | SciRes_000156 | SCR_002091 | NeuroMorph Toolkit | 2026-09-12 12:55:36 | 37 | |||||||
|
DMET-Analyzer Resource Report Resource Website 1+ mentions |
DMET-Analyzer (RRID:SCR_002030) | DMET-Analyzer | software resource | Software tool for the automatic association analysis among the variation of the patient genomes and the clinical conditions of patients, i.e. the different response to drugs. The system allows: (i) to automatize the workflow of analysis of DMET (drug metabolism enzymes and transporters)-SNP (Single Nucleotide Polymorphism) data avoiding the use of multiple tools; (ii) the automatic annotation of DMET-SNP data and the search in existing databases of SNPs (e.g. dbSNP), (iii) the association of SNP with pathway through the search in PharmaKGB, a major knowledge base for pharmacogenomic studies. It has a simple graphical user interface that allows users (doctors/biologists) to upload and analyze DMET files produced by Affymetrix DMET-Console in an interactive way. | drug, metabolism, enzyme, transporter, affymetrix, variation, genome, clinical, affymetrix dmet, single nucleotide polymorphism, annotation, analysis, pharmacogenomic, pathway |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23035929 | Free, Available for download, Freely available | OMICS_01920 | SCR_002030 | DMETANALYZER, DMETANALYZER - A tool for supporting pharmacogenomics data analysis | 2026-09-12 12:55:36 | 1 | ||||||
|
ChIPSeq Peak Finder Resource Report Resource Website 1+ mentions |
ChIPSeq Peak Finder (RRID:SCR_002081) | data analysis software, data processing software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 12, 2017. A software tool to find peaks from ChIPSeq data generated from the Solexa/Illumina platform., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | chipseq, sequencing, dna, analysis, solexa, illumina |
is listed by: OMICtools is listed by: Debian has parent organization: Genome Institute of Singapore; Singapore; Singapore |
PMID:27863463 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00434 | https://sources.debian.org/src/chip-seq/ | SCR_002081 | ChIPSeq Toolbox | 2026-09-12 12:55:36 | 1 | ||||||
|
Mini Analysis Program Resource Report Resource Website 1000+ mentions |
Mini Analysis Program (RRID:SCR_002184) | Mini Analysis | data analysis software, data processing software, software application, software resource | Software tool that detects peaks of any type, any shape, any direction, and any size for neuroscientists who are studying spontaneous activities. Allows detection of virtually any kind of peaks including spontaneous miniature synaptic currents and potentials, action potential spikes, calcium imaging peaks, amperometric peaks, ECG peaks etc. It includes the complex and multiple peak detection algorithm. Has post-detection analyses including essential plots and statistical parameters. Group Analysis provides specialized and detailed analysis options for action potentials, decay fitting, fEPSP/population spikes, amperometry, etc., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Synaptosoft Inc., analysis, peak, spontaneous, activity, synaptic, current, potential, spike, calcium, image, amperometric, ECG, plot, statistical, parameter | THIS RESOURCE IS NO LONGER IN SERVICE | SciRes_000143, SCR_014441 | SCR_002184 | Mini Analysis, MiniAnalysis | 2026-09-12 12:55:37 | 1147 | ||||||||
|
Gene Set Enrichment Analysis Resource Report Resource Website 10000+ mentions |
Gene Set Enrichment Analysis (RRID:SCR_003199) | GSEA | data analysis software, data processing software, software application, software resource, software toolkit | Software package for interpreting gene expression data. Used for interpretation of a large-scale experiment by identifying pathways and processes. | gene, expression, profile, pathway, data, set, phenotype, genome, enrichment, RNA, analysis, bio.tools, bio.tools |
is used by: Molecular Signatures Database is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: GoMapMan has parent organization: Broad Institute |
NCI ; NIGMS ; NIH |
PMID:16199517 | Free, Freely available | SCR_016882, nif-0000-30629, biotools:gsea, OMICS_02279 | http://www.broad.mit.edu/gsea, https://bio.tools/gsea | SCR_003199 | GSEA, Gene Set Enrichment Analysis, Gene Set Enrichment Analysis (GSEA) | 2026-09-12 12:55:53 | 20985 | ||||
|
MetaLocGramN Resource Report Resource Website 1+ mentions |
MetaLocGramN (RRID:SCR_003154) | MetaLocGramN | analysis service resource, data access protocol, data analysis service, production service resource, service resource, software resource, web service | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 5, 2023.A tool for subcellular localization prediction of Gram-negative proteins. You can also use MetaGramLocN via SOAP. SOAP enables you to invoke our method from scripts written in your programming language of choice. | subcellular localization, protein, prediction, sequence, analysis, gram-negative protein, gram-negative, gram-negative bacteria |
is listed by: OMICtools is related to: Biocatalogue - The Life Science Web Services Registry has parent organization: International Institute of Molecular and Cell Biology; Warsaw; Poland |
PMID:22705560 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01626 | SCR_003154 | 2026-09-12 12:55:52 | 3 | |||||||
|
MAP Software Resource Report Resource Website 10+ mentions |
MAP Software (RRID:SCR_003170) | MAP Software | commercial organization, data processing software, software application, software resource | A suite of client / server programs that control spike sorting in the Multichannel Acquisition Processor (MAP) Data Acquisition System (MAP System) and provides real-time data visualization and analysis. Plexon's original program supporting multichannel data acquisition is a suite of programs referred to as the Real-Time Acquisition System Programs for Unit Timing in Neuroscience software (RASPUTIN). This combination of software and hardware enables users to view waveforms, acquire action potential waveforms around a voltage-threshold crossing, sort them in real time according to their shape, record continuous analog signals, such as field potentials, eye position, blood pressure, as well as capture external digital-event data, such as individual TTL lines or multi-bit strobed word data. RASPUTIN utilizes a client/server architecture on a Microsoft Windows operating system. The server program runs the MAP box and distributes the data among a set of cooperating client programs. The program can record analog signals and spike and digital-event data in a single data file, and supports 16, 32, 48, 64, 96 and 128 channel configurations. RASPUTIN's operation is based on two primary programs: Sort Client and MAP Server. The Sort Client is the primary control program for the MAP System hardware and may be used to adjust the MAP operating parameters (e.g., amplification, filtering) and to set the specific sorting parameters for each channel. MAP Server is the low-level interface for configuring the MAP, which transfers commands such as gain and filter changes or parameter settings from the various clients to the MAP box. MAP Server also accumulates data coming from the MAP box in a circular buffer memory. The client programs connect to MAP Server to gain access to that data. MAP Server also mediates communication between the clients, keeping them informed of commands sent to the MAP from other clients. RASPUTIN is not sold separately, but rather arrives pre-loaded on the MAP Control Computer with the purchase of any MAP System. As the MAP System has been replaced by the advanced OmniPlex D Neural Data Acquisition System, Plexon is no longer developing the RASPUTIN software program. | electrophysiology, analysis, sort client, map server, spike sorting, windows | THIS RESOURCE IS NO LONGER IN SERVICE | SciRes_000185 | SCR_003170 | Multichannel Acquisition Processor Software, RASPUTIN, Real-Time Acquisition System Programs for Unit Timing in Neuroscience, Real-Time Acquisition System Programs for Unit Timing in Neuroscience software | 2026-09-12 12:55:53 | 21 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
