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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Geoffs Bio-Directories Resource Report Resource Website |
Geoffs Bio-Directories (RRID:SCR_001016) | data or information resource, narrative resource, web page | A comprehensive listing of companies and organizations involved with genomics and molecular biology. There are lists for genome software and services, genome institutions and supplies, and general institutions. | bio directory, genomics, molecular biology, registry, repository, list | is listed by: OMICtools | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01704 | SCR_001016 | SciCrunch Registry | Geoff's Bio Directories, grouthbio | 2026-11-07 12:02:17 | 0 | ||||||||
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ExPASy ABCD database Resource Report Resource Website 10+ mentions |
ExPASy ABCD database (RRID:SCR_017401) | ABCD ExPASy, The ABCD database | data or information resource, database | Repository of sequenced antibodies, integrating curated information about antibody and its antigen with cross links to standardized databases of chemical and protein entities. Manually curated repository of sequenced antibodies, developed by Geneva Antibody Facility at University of Geneva, in collaboration with CALIPHO and Swiss Prot groups at SIB Swiss Institute of Bioinformatics. Database provides list of sequenced antibodies with their known targets. Each antibody is assigned unique ID number that can be used in academic publications to increase reproducibility of experiments. | Sequenced antibody, manually curated, known target, ExPASy, repository, chemically defined antibodies, antibody, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: ExPASy Bioinformatics Resource Portal is related to: SIB Swiss Institute of Bioinformatics has parent organization: University of Geneva; Geneva; Switzerland |
ProCare Foundation ; Swiss National Science Foundation ; University of Geneva |
PMID:31410491 | Free, Freely available | SCR_019000, biotools:AbCD_database | https://bio.tools/ABCD_database | SCR_017401 | SciCrunch Registry | ExPASy ABCD (AntiBodies Chemically Defined) Database, The ABCD database, AntiBodies Chemically Defined, AntiBodies Chemically Defined Expert Protein Analysis System database, ExPASy ABCD Database, The AntiBodies Chemically Defined Database | 2026-11-07 12:03:17 | 13 | ||||
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MUSC DNA Microarray Database Resource Report Resource Website 1+ mentions |
MUSC DNA Microarray Database (RRID:SCR_010977) | microArrayDB, ��ArrayDB | data or information resource, data repository, database, service resource, storage service resource | Database that is a repository for DNA microarray data generated by MUSC investigators as well as researchers in the global research community. | gene expression, dna microarray |
is listed by: OMICtools is related to: ArrayQuest has parent organization: Medical University of South Carolina; South Carolina; USA |
University Research Resource Foundation ; NCI R24CA095841; NCRR P20RR016434 |
PMID:14668234 | Public, The community can contribute to this resource | OMICS_00868 | SCR_010977 | SciCrunch Registry | MUSC DNA Microarray Database and Project Management System, Medical University of South Carolina DNA Microarray Project Management System and the MUSC DNA Microarray Database, MUSC DNA Microarray Project Management System and MUSC DNA Microarray Database, ��ArrayDB, Medical University of South Carolina DNA Microarray Database | 2026-11-07 11:57:00 | 1 | |||||
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Abertay University Datasets Resource Report Resource Website |
Abertay University Datasets (RRID:SCR_023127) | data repository, service resource, storage service resource | Open access repository. Contains research outputs and supporting data from staff and students, including published articles, conference papers, reports, datasets and theses. | is listed by: DataCite | Free, Freely available | DOI:10.57995 | https://doi.org/10.57995, https://dx.doi.org/10.57995 | SCR_023127 | SciCrunch Registry | Abertay Datasets | 2026-11-07 12:00:56 | 0 | ||||||||
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BTRIS: NIH Biomedical Translational Research Information System Resource Report Resource Website 1+ mentions |
BTRIS: NIH Biomedical Translational Research Information System (RRID:SCR_006838) | BTRIS | clinical database, data management software, data repository, service resource, software application, software resource, storage service resource | Provides NIH clinical investigators with access to identifiable data for the subjects on their own active protocols, while providing all NIH investigators with access to de-identified data across all protocols. BTRIS provides users with advanced search, filtering, and aggregation methods to create data sets to support ongoing studies and stimulate ideas for new research. BTRIS is two distinct but interrelated applications, BTRIS Data Access and BTRIS Preferences. * BTRIS Data Access is the data repository where principal investigators or their designee create reports on their active protocols with identified subject data. Reports include the IRB Inclusion Enrollment Report, demographics, patient lists, laboratory and microbiology results, vital signs, medication orders and administration, diagnoses, and radiology reports (with links to images in the CC PACS system). * BTRIS Preferences is a Web based application that allows principal investigators or their designees to verify subject enrollment in their protocol(s). This ensures that reports created in BTRIS Data Access include all subjects. It also allows the principal investigator to designate an alternate investigator from the protocol to manage subject enrollment and create reports in BTRIS Data Access. BTRIS contains subject data from CRIS/MIS (the Clinical Center Medical Information Systems) and research data from NIAID (Crimson), NIAAA, and NCI. Data are available from 1976 to the present. | data management, clinical, data sharing | has parent organization: National Institutes of Health | nif-0000-00577 | SCR_006838 | SciCrunch Registry | Biomedical Translational Research Information System | 2026-11-07 11:56:03 | 1 | ||||||||
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Globus Genomics Resource Report Resource Website 10+ mentions |
Globus Genomics (RRID:SCR_011887) | Globus Genomics | data repository, service resource, storage service resource | Software-as-a-service for big data management offering fast, reliable, secure file transfer and sharing services to non-profit researchers. It combines state-of-the-art algorithms, data management tools, a graphical workflow environment, and an elastic computing infrastructure making it easy to manipulate, store, and share your data, no matter how big it gets. | data sharing, data management, genomics |
is listed by: OMICtools has parent organization: Argonne National Laboratory |
OMICS_01220 | SCR_011887 | SciCrunch Registry | 2026-11-07 11:57:21 | 26 | |||||||||
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GlyGen Resource Report Resource Website 10+ mentions |
GlyGen (RRID:SCR_023438) | data or information resource, portal, project portal | Data integration and dissemination project for carbohydrate and glycoconjugate related data. Computational and informatics resources for glycoscience. Portal provides user-friendly interface that facilitates exploration of glycoscience data from diverse international bioinformatics resources, including National Center for Biotechnology Information (NCBI), UniProt, Protein Data Bank (PDB), UniCarbKB, and GlyTouCan glycan structure repository. Retrieves information from data sources and integrates and harmonizes this data. Includes knowledge about molecular, biophysical and functional properties of glycans, genes, proteins and lipids organized in pathways and ontologies, plus data related to mutation and expression. | Gly-glycobiology Gen-information, glycobiology, glycans molecular properties, glycans biophysical properties, glycans functional properties properties, glycans, genes, proteins, lipids, pathways and ontologies, data, mutation and expression data, carbohydrate and glycoconjugate related data, | NIGMS 1U01GM125267; NIGMS R24 GM146616 |
PMID:31616925 PMID:32324859 |
Free, Freely available | SCR_023438 | SciCrunch Registry | GlyGen Portal | 2026-11-07 12:01:47 | 20 | ||||||||
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BrainSlices Resource Report Resource Website |
BrainSlices (RRID:SCR_010504) | BS | data repository, image repository, service resource, storage service resource | BrainSlices is a repository of annotated high-resolution images of brain tissue. | has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland | Polish Ministry of Science and Higher Education POIG.02.03.00-00-003/09 | nlx_158569 | SCR_010504 | SciCrunch Registry | 2026-11-07 12:01:32 | 0 | |||||||||
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Mass spectrometry Interactive Virtual Environment (MassIVE) Resource Report Resource Website 1000+ mentions |
Mass spectrometry Interactive Virtual Environment (MassIVE) (RRID:SCR_013665) | MassIVE | data or information resource, data repository, database, service resource, storage service resource | Mass spectrometry Interactive Virtual Environment (MassIVE) is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. Data repository for proteomics data. | Proteomics, Mass Spec, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is related to: ProteomeXchange has parent organization: University of California at San Diego; California; USA |
r3d100012858 | https://massive.ucsd.edu/ | SCR_013665 | SciCrunch Registry | Mass spectrometry Interactive Virtual Environment (MassIVE), MassIVE, Mass spectrometry Interactive Virtual Environment | 2026-11-07 11:57:50 | 1409 | |||||||
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openMINDS computation metadata model Resource Report Resource Website |
openMINDS computation metadata model (RRID:SCR_026249) | openMINDS_computation, openMINDS computation | data or information resource, narrative resource, software resource, source code, standard specification | Software repository is part of the open Metadata Initiative for Neuroscience Data Structures (openMINDS). It extends openMINDS core, by providing schema-templates for adding metadata for simulation, data analysis and visualization. | metadata schema, graph metadata model, providing schema-templates, adding metadata for simulation, data analysis and visualization, |
is related to: EBRAINS is related to: openMINDS metadata framework |
European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA1 720270; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA2 785907; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA3 945539; European Union’s Research and Innovation Program Horizon Europe - EBRAINS 2.0 101147319; Helmholtz International BigBrain Analytics and Learning Laboratory (HIBALL) |
Free, Available for download, Freely available | https://openminds-documentation.readthedocs.io/en/latest/schema_specifications/computation.html | SCR_026249 | SciCrunch Registry | 2026-11-07 12:06:28 | 0 | |||||||
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CUAHSI Hydrologic Information System Resource Report Resource Website |
CUAHSI Hydrologic Information System (RRID:SCR_002197) | CUAHSI-HIS, CUAHSI HIS | data access protocol, data analysis software, data or information resource, data processing software, data repository, database, service resource, software application, software resource, storage service resource, web service | An internet-based system for sharing hydrologic data. It is comprised of databases and servers, connected through web services, to client applications, allowing for the publication, discovery and access of data. | hydrologic data, data sharing, water | is listed by: CINERGI | Free, Freely available | r3d100010082, nlx_154706 | http://his.cuahsi.org/ | SCR_002197 | SciCrunch Registry | Consortium of Universities for the Advancement of Hydrologic Science Hydrologic Information System | 2026-11-07 11:54:34 | 0 | ||||||
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Neuron Registry Curator Interface Resource Report Resource Website 1+ mentions |
Neuron Registry Curator Interface (RRID:SCR_000094) | NRCI | data or information resource, data repository, service resource, storage service resource | Repository of neuron types characterized by machine-readable part-relation-value triple-based neuron properties. A Curator Interface facilitates the direct knowledge transfer of information from the participating neuroscientist for entry into the Neuron Registry. | neuron, registry, neuron property, data repository, knowledge environment, database, registry, neuroinformatics |
is related to: Neuron Registry Annotated Corpus is related to: Program on Ontologies of Neural Structures has parent organization: George Mason University; Virginia; USA has parent organization: International Neuroinformatics Coordinating Facility |
International Neuroinformatics Coordinating Facility ; under the Program on Ontologies of Neural Structures PONS |
Restricted | nif-0000-00540 | http://incfnrci.appspot.com | SCR_000094 | SciCrunch Registry | INCF Neuron Registry | 2026-11-07 11:53:52 | 2 | |||||
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Access-ScienceJobs.co.uk Resource Report Resource Website |
Access-ScienceJobs.co.uk (RRID:SCR_005157) | Access-ScienceJobs.co.uk | data or information resource, job resource, narrative resource | A leading online job board for scientists, Access-ScienceJobs.co.uk was initially launched in July 2005 from an existing scientific recruitment platform with the sole aim to provide employers a more cost-effective recruitment advertising solution, and for jobseekers a one-stop portal for finding their ideal scientific position. For Jobseekers We work with some of the UK''s leading recruitment agencies and direct employers to bring you an extensive selection of scientific jobs across all related industry sectors. Start your job search here or find a direct employer or agency in our companies a-z directory. Don''t miss our articles section, with useful careers, reviews and news articles written by respected recruitment and cv specialists. * Apply Online - fast, securely & professionally * Save your Job Alerts and manage them easily within your control panel * Create an effective CV Profile and let recruiters find you For Recruiters Looking to fill a job vacancy? We attract a wide range of Scientists within the UK through various forms of job distributions, networks and media coverage. * Post your Science related Jobs to our network of qualified Scientists * Edit, Repost & Expire your Job postings, anytime * Find professional Science Candidates when you CV Search online * Post your Career & News Articles to enhance your Employer brand * List your Profile for FREE in our Companies A-Z Directory | job seeker, employer, job posting, career, science, database, data storage repository |
is used by: NIF Data Federation is related to: Integrated Jobs |
nlx_144183 | SCR_005157 | SciCrunch Registry | 2026-11-07 12:00:34 | 0 | |||||||||
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CRAPome Resource Report Resource Website 10+ mentions |
CRAPome (RRID:SCR_025008) | data access protocol, data or information resource, database, software resource, web service | Database of Mass Spectrometry contaminants and pipeline for Affinity Purification coupled with Mass Spectrometry analysis. Contaminant repository for affinity purification mass spectrometry data. Database of standardized negative controls. Used to identify protein-protein interactions. | Mass Spectrometry contaminants, standardized negative controls, contaminant repository, AP-MS analysis, affinity purification, mass spectrometry data, | Austrian Academy of Sciences ; Austrian Federal Ministry for Science and Research ; Austrian Science Fund ; Canadian Institutes of Health Research ; European Molecular Biology Organisation ; European Research Council ; European Union 7th Framework Program ; government of Ontario ; Human Frontier Science Program ; NCI R21 CA16006001A1; Netherlands Proteomics Center ; NHLBI HL112618-01; NIDA DP1DA026192; NIGMS 5R01GM94231; Stowers Institute for Medical Research |
PMID:23921808 | Free, Freely available, | https://reprint-apms.org/ | SCR_025008 | SciCrunch Registry | CRAPome:Contaminant Repository for Affinity Purification | 2026-11-07 12:06:08 | 24 | |||||||
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VisiGene Image Browser Resource Report Resource Website 50+ mentions |
VisiGene Image Browser (RRID:SCR_003341) | VisiGene | analysis service resource, data analysis service, data or information resource, data repository, database, image collection, image repository, production service resource, service resource, storage service resource | Virtual microscope for viewing in situ images that show where a gene is used in an organism, sometimes down to cellular resolution. The user can examine cell-by-cell as well as tissue-by-tissue expression patterns. Users can retrieve images that meet specific search criteria, then interactively zoom and scroll across the collection. Image set contributions are welcome. The following image collections are currently available for browsing: * High-quality high-resolution images of eight-week-old male mouse sagittal brain slices with reverse-complemented mRNA hybridization probes from the Allen Brain Atlas, courtesy of the Allen Institute for Brain Science * Mouse in situ images from the Jackson Lab Gene Expression Database (GXD) at MGI * Transcription factors in mouse embryos from the Mahoney Center for Neuro-Oncology * Mouse head and brain in situ images from NCBI''''s Gene Expression Nervous System Atlas (GENSAT) database * Xenopus laevis in situ images from the National Institute for Basic Biology (NIBB) XDB project | molecular neuroanatomy resource, midbrain, brain, in situ, gene, theiler stage, visualization, cellular resolution, mrna hybridization, in situ hybridization, male, nieuwkoop, faber stage, gene expression, embryonic mouse, adult mouse |
is related to: Gene Expression Database is related to: Allen Institute for Brain Science is related to: Gene Expression Nervous System Atlas has parent organization: University of California at Santa Cruz; California; USA |
PMID:18996895 PMID:17142222 |
Free, Freely available | nif-0000-00198 | SCR_003341 | SciCrunch Registry | 2026-11-07 11:55:06 | 58 | |||||||
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ms-utils.org Resource Report Resource Website 1+ mentions |
ms-utils.org (RRID:SCR_019810) | data analysis software, data processing software, data visualization software, software application, software repository, software resource | Open source software suite for mass spectrometry based proteomics. Software repository and collection of free software for analysis of mass spectrometry data. Software and code snippets for visualization and analysis of mass spectrometry data with emphasis on automated methods for proteomics and protein analysis. | Mass spectrometry data analysis, data analysis, mass spectrometry, proteomics, protein analysis software, protein analysis | is related to: bio.tools | Free, Available for download, Freely available | SCR_019810 | SciCrunch Registry | 2026-11-07 11:59:26 | 1 | ||||||||||
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neurodebian Resource Report Resource Website 10+ mentions |
neurodebian (RRID:SCR_004401) | NeuroDebian | data distribution software, data processing software, software application, software development environment, software development tool, software repository, software resource, source code | Collection based on a collaborative effort of popular neuroscience research software for the Debian operating system as well as Ubuntu and other derivatives. Popular packages include AFNI, FSL, PyMVPA and many others. It contains both unofficial or prospective packages which are not (yet) available from the main Debian archive, as well as backported or simply rebuilt packages also available elsewhere. A listing of current and planned projects is available if you want to get involved. The main goal of the project is to provide a versatile and convenient environment for neuroscientific research that is based on open-source software. To this end, the project offers a package repository that complements the main Debian (and Ubuntu) archive. NeuroDebian is not yet another Linux distribution, but rather an effort inside the Debian project itself. Software packages are fully integrated into the Debian system and from there will eventually migrate into Ubuntu as well. With NeuroDebian, installing and updating neuroscience software is no different from any other part of the operating system. Maintaining a research software environment becomes as easy as installing an editor. There is also virtual machine to test NeuroDebian on Windows or Mac OS. If you want to see your software packaged for Debian, please drop them a note. | linux, linux distribution, virtual machine, fmri, eeg, pymvpa, python, r, debian, brain image, neuroscience, platform, afni brik, bshort, bfloat, console (text based), dicom, domain independent, freebsd, gnome, kde, linux, minc2, nifti, philips par/rec, development environment, posix/unix-like, system administrator, web environment |
lists: MRIcron is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: ITK-SNAP is related to: NITRC Computational Environment is related to: PyMVPA is related to: MRtrix has parent organization: Debian has parent organization: Dartmouth College; New Hampshire; USA has parent organization: Otto-von-Guericke University Magdeburg; Saxony-Anhalt; Germany is parent organization of: VoxBo is parent organization of: Computational Morphometry Toolkit |
PMID:23055966 | GNU General Public License v3, The community can contribute to this resource | nlx_143723 | http://www.nitrc.org/projects/neurodebian | SCR_004401 | SciCrunch Registry | Debian Neuroscience Repository, neuro debian | 2026-11-07 11:55:20 | 41 | |||||
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Optogenetics and Transgenic Technology Core Resource Report Resource Website 1+ mentions |
Optogenetics and Transgenic Technology Core (RRID:SCR_014785) | access service resource, core facility, service resource | Core facility and data repository which creates and characterizes transgenic rats for use in models of neurological diseases, such as addiction and neurodegeneration. Researchers can request strain(s) from RRRC or go to the Transgenic Rat Request page. | core facility, data repository, rat, transgenic rat, intramural research project, nida, neurological disease | has parent organization: National Institute on Drug Abuse | Neurological disease | Available to the research community, Annual feedback required | SCR_014785 | SciCrunch Registry | NIDA Trangenic Rat Project | 2026-11-07 12:05:00 | 1 | ||||||||
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AIRR Knowledge Commons Resource Report Resource Website 1+ mentions |
AIRR Knowledge Commons (RRID:SCR_026531) | data or information resource, knowledge resource | Repository of integrated data and knowledge about adaptive immune receptors, the complex genomic loci encoding AIRs, and the antigens and epitopes bound by AIR. | adaptive immune receptors, complex genomic loci encoding AIRs, antigens and epitopes bound by AIR, | is affiliated with: Immune Epitope Database and Analysis Resource (IEDB) | DOI:10.1016/j.cels.2025.101401 | Free, Freely available | SCR_026531 | SciCrunch Registry | airr-knowledge.org, AIRR-Knowledge | 2026-11-07 12:06:59 | 1 | ||||||||
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Atlas of Medical Parasitology Resource Report Resource Website |
Atlas of Medical Parasitology (RRID:SCR_008163) | A.M.P., AMP | data or information resource, data repository, database, image repository, service resource, storage service resource |
Database of images on medical parasitology created to provide educational materials for medical students primarily, but professional workers in medical or paramedical fields may also refer to this site covering the significant parasites in the world. Each database of protozoans, nematodes, trematodes, cestodes and arthropods contains information on the morphology, life cycle, geographical distribution, symptoms, prevention, etc. Users who wish to contribute can send the editor unpublished images of human parasites (microscopical, clinical, radiological or epidemiological aspects of human parasitic infections) by mail or e-mail. Pathology specimens (slide, samples) are welcome too. The A.M.P. received the citation of reliable sources such as Parasitology today and The Lancet, and is now listed in the Internet Resources on Specific Infectious Diseases Topics of the Mandell, Douglas and Bennets Principles and Practice of Infectious Diseases Fifth Edition. This website was established with a great contribution of the PROJECT COLLABORATORS and many contributors of The Korean Society for Parasitology. |
epidemiological, clinical, disease, human, infection, medical, microscopical, parasite, parasitic, parasitology, pathology, radiological, specimen, morphology, life cycle, geographical distribution, symptom, prevention, human parasite, biospecimen repository, training material, image | has parent organization: Chungbuk National University; Cheongju; South Korea | Human parasitic infection | Ministry of Health and Welfare - Republic of Korea ; Korean Medical Research Information Center |
The community can contribute to this resource | nif-0000-21025 | http://www.cdfound.to.it/_atlas.htm | SCR_008163 | SciCrunch Registry | Web Atlas of Medical Parasitology | 2026-11-07 11:56:29 | 0 |
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