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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PASS PEDIGREE Resource Report Resource Website |
PASS PEDIGREE (RRID:SCR_009315) | PASS PEDIGREE | software application, software resource | Software application to draw the most complex family trees in a matter of minutes instead of hours of work. The basis of this is an algorithm for automatically builing a family tree. Of course, manual adjustments in the family tree can be made for your specific requirements. PASS Pedigree meets all international conventions concerning the drawing of pedigrees. A converter can convert historical Cyrillic pedigrees automatically to PASS Pedigree. Unlike before, all your family trees are stored in one single database. PASS Pedigree can intelligently connect to many genetic centers (e.g. three genetic centers in the Netherlands) with the existing patient information, via the lab system HELIX based on HL7 techniques. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154509 | SCR_009315 | 2026-08-09 09:05:16 | 0 | |||||||||
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OSIRIS Resource Report Resource Website 100+ mentions |
OSIRIS (RRID:SCR_009313) | OSIRIS | software application, software resource | Software tool for the retrieval of articles from MEDLINE related to the sequence variants reported for a human gene. The variations considered are single nucleotide polymorphisms (SNPs), insertion/deletion polymorphisms (indel), microsatellite, and named variations (e.g. Alu sequences). (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154505 | SCR_009313 | 2026-08-09 09:05:00 | 218 | ||||||||
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P ACT Resource Report Resource Website 1+ mentions |
P ACT (RRID:SCR_009314) | P_ACT | software application, software resource | An R program that adjusts sets of up to 1000 p-values from association tests between correlated traits and SNPs for multiple testing, accounting for the correlation between tests. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154506 | SCR_009314 | P-values: Adjustment for Correlated Tests | 2026-08-09 09:05:09 | 4 | ||||||||
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MARGARITA Resource Report Resource Website 1+ mentions |
MARGARITA (RRID:SCR_009279) | MARGARITA | software application, software resource | Software application that infers genealogies from population genotype data and uses these to map disease loci. These genealogies take the form of the Ancestral Recombination Graph (ARG). The ARG defines a genealogical tree for each locus, and as one moves along the chromosome the topologies of consecutive trees shift according to the impact of historical recombination events. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154460 | SCR_009279 | 2026-08-09 09:05:15 | 2 | |||||||||
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MAPINSPECT Resource Report Resource Website 100+ mentions |
MAPINSPECT (RRID:SCR_009277) | MAPINSPECT | software application, software resource | Software application that can be used to compare linkage maps obtained from different sources/populations/etc.. It will draw the linkage maps and look for common marker names, these are then connected in the drawing with dashed lines. All neighboring maps are compared in this way. Images can be printed and saved. Orders of the MAPs (ie which map is compared with which other map) can be changed and maps can be flipped (right mouse button). remark: MapComp bears close relationships with the GGT software package (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, delphi pascal, ms-window (32-bit) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154458 | SCR_009277 | GGT | 2026-08-09 09:04:59 | 324 | |||||||
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NOCOM Resource Report Resource Website 1+ mentions |
NOCOM (RRID:SCR_009310) | NOCOM | software application, software resource | Software application to estimate parameters for mixture of normal distributions (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154500 | SCR_009310 | 2026-08-09 09:05:09 | 8 | |||||||||
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MAPDISTO Resource Report Resource Website 100+ mentions |
MAPDISTO (RRID:SCR_009275) | MAPDISTO | software application, software resource | Software program for mapping genetic markers in experimental segregating populations like backcross, doubled haploids, single-seed descent. Its specificity is to propose recombination fraction estimates in case of segregation distortion. It can (1) compute and draw genetic maps easily and quickly through a graphical interface; (2) facilitate the analysis of marker data showing segregation distortion due to differential viability of gametes or zygotes. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-excel | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154456 | SCR_009275 | 2026-08-09 09:05:08 | 116 | ||||||||
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MAP/MAP+/MAP+H/MAP2000 Resource Report Resource Website |
MAP/MAP+/MAP+H/MAP2000 (RRID:SCR_009272) | MAP/MAP+/MAP+H/MAP2000 | software application, software resource | Software application for multiple pairwise linkage analysis under interference (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, unix, sunos | is listed by: Genetic Analysis Software | nlx_154453 | SCR_009272 | (MAP+H is the radiation Hybrid module of MAP+) | 2026-08-09 09:05:08 | 0 | ||||||||
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MANTEL-STRUCT Resource Report Resource Website 1+ mentions |
MANTEL-STRUCT (RRID:SCR_009271) | MANTEL-STRUCT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that tests for population structure through the use of Mantel tests (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154451 | SCR_009271 | 2026-08-09 09:04:59 | 4 | ||||||||
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MULTISIM Resource Report Resource Website 10+ mentions |
MULTISIM (RRID:SCR_009308) | MULTISIM | software application, software resource | Software application to analyze the numbers of individuals that founded new populations following a bottleneck or founding event (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | nlx_154498 | SCR_009308 | 2026-08-09 09:05:16 | 13 | |||||||||
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MALDSOFT Resource Report Resource Website |
MALDSOFT (RRID:SCR_009269) | MALDSOFT | software application, software resource | Software program for admixture mapping of complex trait loci, using case-control data. The samples should come from a recently-admixed population; additional ''learning'' samples from the parental populations are helpful. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, linux, ms-windows, (dos/window...) | is listed by: Genetic Analysis Software | nlx_154449 | SCR_009269 | 2026-08-09 09:05:08 | 0 | |||||||||
|
SAGE Resource Report Resource Website 1000+ mentions |
SAGE (RRID:SCR_009302) | SAGE | software application, software resource | Software application that provides researchers with the tools necessary for various types of statistical genetic analysis of human family data. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, version 4.0 will be in c++, unix, (dec unix/solaris), ms-windows, (95/nt), linux |
is listed by: Genetic Analysis Software is listed by: SoftCite |
nlx_154606 | SCR_009302 | Statistical Analysis for Genetic Epidemiology | 2026-08-09 09:05:15 | 1037 | ||||||||
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PEDMANAGER Resource Report Resource Website |
PEDMANAGER (RRID:SCR_009300) | PEDMANAGER | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154491 | SCR_009300 | 2026-08-09 09:05:09 | 0 | |||||||||
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LRTAE Resource Report Resource Website 1+ mentions |
LRTAE (RRID:SCR_009265) | LRTAE | software application, software resource | Software application to compute a likelihood ratio test statistic that increases power to detect genetic association in the presence of phenotype, genotype, and/or haplotype misclassification errors. In addition, the program produces asymptotically unbiased estimates of frequency parameters. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, unix, solaris, linux | is listed by: Genetic Analysis Software | nlx_154443 | SCR_009265 | Likelihood Ratio Test Allowing for Errors | 2026-08-09 09:04:59 | 1 | ||||||||
|
LOT Resource Report Resource Website |
LOT (RRID:SCR_009261) | LOT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, linux, unix, solaris | is listed by: Genetic Analysis Software | nlx_154440 | http://peace.med.yale.edu/pub/LOT/ | SCR_009261 | Linkage analysis of Ordinal Traits | 2026-08-09 09:04:59 | 0 | |||||||
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E-Prime Resource Report Resource Website 100+ mentions |
E-Prime (RRID:SCR_009567) | E-Prime | software application, software resource | A suite of applications to fulfill all of your computerized experiment needs. Used by more than 15,000 professionals in the research community, E-Prime provides a truly easy-to-use environment for computerized experiment design, data collection, and analysis. E-Prime provides millisecond precision timing to ensure the accuracy of your data. E-Prime's flexibility to create simple to complex experiments is ideal for both novice and advanced users. The E-Prime suite of applications includes: * E-Studio ? Drag and drop graphical interface for experiment design * E-Basic ? Underlying scripting language of E-Prime * E-Run ? Once the experiment is generated with a single click, E-Run affords you the millisecond precision of stimulus presentation, synchronizations, and data collection. * E-Merge ? Merges your single session data files for group analysis * E-DataAid ? Data management utility * E-Recovery ? Recovers data files | experimental control, microsoft, magnetic resonance, visual basic, win32 (ms windows), windows, windows vista, windows xp |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: SoftCite |
nlx_155747 | http://www.nitrc.org/projects/eprime | SCR_009567 | E-Prime 2.0 | 2026-08-09 09:05:04 | 173 | |||||||
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DWI/DTI Quality Control Tool: DTIPrep Resource Report Resource Website 1+ mentions |
DWI/DTI Quality Control Tool: DTIPrep (RRID:SCR_009562) | DTIPrep | software application, software resource | DTIPrep performs a Study-specific Protocol based automatic pipeline for DWI/DTI quality control and preparation. This is both a GUI and command line tool. The configurable pipeline includes image/diffusion information check, padding/Cropping of data, slice-wise, interlace-wise and gradient-wise intensity and motion check, head motion and Eddy current artifact correction, and DTI computing. | c++, linux, microsoft, magnetic resonance, nrrd, posix/unix-like, win32 (ms windows), windows, windows xp, dti | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | BSD License | nlx_155742 | http://www.nitrc.org/projects/dtiprep | SCR_009562 | 2026-08-09 09:05:04 | 4 | |||||||
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Mach2dat Resource Report Resource Website 10+ mentions |
Mach2dat (RRID:SCR_009599) | software application, software resource | Software that performs logistic regression, using imputed SNP dosage data and adjusting for covariates. | genetic association, genomic analysis, imaging genomics, snp, gene, imputation |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: MACH 1.0 has parent organization: University of Michigan; Ann Arbor; USA |
PMID:21058334 PMID:19715440 |
Free, Non-commercial, Acknowledgement requested | nlx_155801 | http://www.nitrc.org/projects/mach2dat | SCR_009599 | Mach2dat: Association with MACH output | 2026-08-09 09:05:14 | 40 | ||||||
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FiberViewerLight Resource Report Resource Website 1+ mentions |
FiberViewerLight (RRID:SCR_009476) | FiberViewerLight | software application, software resource | Light version of the existing tool Fiber Viewer. It includes every clustering methods of Fiber Viewer such as : Lenght, Gravity, Hausdorff, and Mean methods but also a Normalized Cut algorithm. As in the full version you can also display a plane on the fiber. This tool works faster than the full version due to simplified visualizations. | c++, linux, microsoft, magnetic resonance, posix/unix-like | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | BSD License | nlx_155623 | SCR_009476 | 2026-08-09 09:05:02 | 5 | ||||||||
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MaCH-Admix Resource Report Resource Website 10+ mentions |
MaCH-Admix (RRID:SCR_009598) | software application, software resource | A genotype imputation software that is an extension to MaCH for faster and more flexible imputaiton, especially in admixed populations. It has incorporated a novel piecewise reference selection method to create reference panels tailored for target individual(s). This reference selection method generates better imputation quality in shorter running time. MaCH-Admix also separates model parameter estimation from imputation. The separation allows users to perform imputation with standard reference panels + pre-calibrated parameters in a data independent fashion. Alternatively, if one works with study-specific reference panels, or isolated target population, one has the option to simultaneously estimate these model parameters while performing imputation. MaCH-Admix has included many other useful options and supports VCF input files. All existing MaCH documentation applies to MaCH-Admix. | genomic analysis, imaging genomics, imputation, snp, gene, bio.tools |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is listed by: bio.tools has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
PMID:23074066 | Free, Non-commercial, Acknowledgement requested | nlx_155800, biotools:mach-admix | http://www.nitrc.org/projects/mach-admix, https://bio.tools/mach-admix | SCR_009598 | MaCH-Admix: Genotype Imputation Software | 2026-08-09 09:05:04 | 18 |
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