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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Neuroscience Link List Resource Report Resource Website |
Neuroscience Link List (RRID:SCR_000130) | data or information resource, topical portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A website that provides links to many neuroscience resources on the web as well as links to university neuroscience and neurobiology program home-pages. | link list, links, neuroscience resources, topical portal | has parent organization: Weill Cornell Medical College; New York; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00083 | SCR_000130 | World-Wide Web Virtual Library:Neuroscience, World-Wide Web Virtual Library:Neuroscience (Biosciences), The World-Wide Web Virtual Library:Neurosciences | 2026-08-10 09:31:05 | 0 | ||||||||
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Computational Neuroscience on the Web Resource Report Resource Website 1+ mentions |
Computational Neuroscience on the Web (RRID:SCR_000010) | data or information resource, topical portal, portal | Annotated index for computational neurobiology, focusing on compartmental modeling and realistic simulations of biological neural systems. Has resources to find modeling software and software for computational morphology, phase plane and spike train analysis, and web based neuroinformatics. Provides links to major laboratories, researchers, conferences, education and funding for theoretical neurobiology. | computational, neuroscience, compartmental, modeling, simulation, biological, neural, system, neuroinformatics, index | Free, Freely available | nif-0000-00107 | http://home.earthlink.net/~perlewitz/ | SCR_000010 | 2026-08-10 09:31:03 | 1 | |||||||||
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INCF Dataspace Resource Report Resource Website 1+ mentions |
INCF Dataspace (RRID:SCR_000158) | DataSpace | service resource, storage service resource, data repository |
THIS RESOURCE IS NO LONGER IN SERVICE. Documented August 21, 2017. Repository for sharing of neuroscience data, text, images, sounds, movies, models and simulations. |
neuroscience, text, image, sound, video, model, simulation, data sharing, preservation | has parent organization: International Neuroinformatics Coordinating Facility | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157665 | SCR_000158 | 2026-08-10 09:31:05 | 2 | ||||||||
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National Spasmodic Dysphonia Association Resource Report Resource Website 1+ mentions |
National Spasmodic Dysphonia Association (RRID:SCR_000447) | data or information resource, topical portal, portal | The mission of the National Spasmodic Dysphonia Association is to advance medical research into the causes of and treatments for spasmodic dysphonia, promote physician and public awareness of the disorder, and provide support to those affected by spasmodic dysphonia. | patient support | nif-0000-00490 | SCR_000447 | NSDA | 2026-08-10 09:31:09 | 1 | ||||||||||
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VISAGES Research Resource Report Resource Website 1+ mentions |
VISAGES Research (RRID:SCR_000749) | VisAGeS | data or information resource, topical portal, portal, organization portal | Research team focused on research and development of new algorithms in medical imaging, information processing and computer assisted intervention in the context of the pathologies of the central nervous system. Research team jointly affiliated to INSERM (National Institute of Health and Scientific Research), Inria (National Institute of Research in Computer Sciences and Automation) and IRISA / UMR CNRS 6074, University of Rennes I. Multidisciplinary team merging researchers in image processing and medical doctors. | team, image, processing, researcher, medical, doctor, development, algorithm, information, pathology, central, nervous, system |
is related to: Empenn has parent organization: University of Rennes 1; Rennes; France is parent organization of: Anima is parent organization of: Anima scripts |
Multiple Sclerosis, Epilepsy, Parkinson, Dementia, Stroke, Depression, Schizophrenia | nif-0000-10223 | https://www.irisa.fr/RA/D5/VISAGES/2015/visages2015.pdf | SCR_000749 | Vision Action and information manaGEment System in health, VisAGeS, VISAGES | 2026-08-10 09:31:15 | 5 | ||||||
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FluWikie.com Resource Report Resource Website |
FluWikie.com (RRID:SCR_000506) | data or information resource, topical portal, portal | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. Flu Wikie is a topical portal on the flu. Major categories include health, Flu Symptoms, Avian Influenza, Swine Flu, Cold, Vaccination, Pandemic, Vitamin D, and Immune System. Many articles on topic are included. | virus | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_22823 | SCR_000506 | Flu Wikie, FluWikie | 2026-08-10 09:31:10 | 0 | |||||||||
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Wnt homepage Resource Report Resource Website 10+ mentions |
Wnt homepage (RRID:SCR_000662) | Wnt homepage | data or information resource, topical portal, portal | A resource for members of the Wnt community, providing information on progress in the field, maps on signaling pathways, and methods. The page on reagents lists many resources generously made available to and by the Wnt community. Wnt signaling is discussed in many reviews and in a recent book. There are usually several Wnt meetings per year. | wnt signaling, wnt, wnt protein, wnt pathway, signaling, pathway, method, protein, reagent, bibliography | has parent organization: Stanford University; Stanford; California | Cancer | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156863 | SCR_000662 | the Wnt homepage | 2026-08-10 09:31:14 | 13 | ||||||
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Cardiovascular Proteomics Center Resource Report Resource Website |
Cardiovascular Proteomics Center (RRID:SCR_000603) | CPC, BUSM CPC | data or information resource, topical portal, portal | The Cardiovascular Proteomics Center is a research center funded by the NIH/NHLBI to analyze and identify proteins that may be modified or created by oxidative stress. The CPC is developing and applying new proteomics methodology and instrumentation to the analysis of known proteins and those yet to be discovered. | protein, cardiovascular, proteomics, heart, oxidative stress, mass spectrometry, biology, clinical | has parent organization: Boston University School of Medicine; Massachusetts; USA | NHLBI N01HV28178-12-0-1 | nlx_149148 | SCR_000603 | BUSM Cardiovascular Proteomics Center, Boston University School of Medicine Cardiovascular Proteomics Center, BU Cardiovascular Proteomics Center | 2026-08-10 09:31:12 | 0 | |||||||
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GDC Resource Report Resource Website 1+ mentions |
GDC (RRID:SCR_001007) | GDC | data analysis software, software application, data management software, software resource, data processing software | A C++ application designed for compression of genome collections from the same species. | compression, genome collection, c++, genome, software |
is listed by: OMICtools is hosted by: GitHub |
DOI:10.1038/srep11565 | Source code available for download | OMICS_00958 | https://github.com/refresh-bio/GDC2 | SCR_001007 | GDC 2, Genome Differential Compressor, Genome Differential Compressor (GDC) | 2026-08-10 09:31:19 | 1 | |||||
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CISCRP- The Center for Information and Study on Clinical Research Participation Resource Report Resource Website |
CISCRP- The Center for Information and Study on Clinical Research Participation (RRID:SCR_001152) | data or information resource, topical portal, portal | CISCRP is a resource for information on participation in, understanding of, and resources for clinical research participants and scientists. The mission of the Center is to educate, inform and empower patients, the public, medical and research professionals, the media and policymakers about clinical research participation and what it means to be an active participant in the clinical research process, promote greater awareness and understanding of clinical research participation and the role that it plays in public health, facilitate more effective collaboration among all members of the clinical research enterprise, and provide resources for the research community to better understand the study volunteer. To that end, the Center has developed a broad national awareness and education initiative in order to better inform the public at large about clinical study information. Furthermore, on its website, the Center offers program and event information related to clinical trials, an information center with facts, figures, informational resources, and FAQs for both patients and researchers, and a mailing list of clinical trial information. :The Center also maintains its own search engine website, : :searchclinicaltrials.org : : :, for those looking for further clinical trial information. The Center for Information and Study on Clinical Research Participation is located in Dedham, MA. :NIF thanks the : :Parkinson's Disease Foundation : : :for their referral of this resource to us. | clinical research, clinical study | nif-0000-11642 | SCR_001152 | CISCRP | 2026-08-10 09:31:22 | 0 | ||||||||||
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CenterWatch Resource Report Resource Website 1+ mentions |
CenterWatch (RRID:SCR_001158) | data or information resource, topical portal, portal | CenterWatch is an online resource for news, directories, analysis, and proprietary market research for clinical research professionals and patients. For patients, CenterWatch is committed to providing information on clinical trials, specific drugs, as well as other essential health and educational resources. On this website, patients can search clinical trials, receive e-mail notifications about specific clinical trials, review results from completed clinical trials, search drug information, learn about volunteering for a clinical trial, read an overview of the clinical trials process and find other health and educational resources. For researchers, CenterWatch offers a wide range of tools and resources to improve patient and investigator recruitment, remain current with industry trends and business practices, and strengthen organizational procedures. CenterWatch also offers information on grant opportunities, and a variety of educational books and publications. Researchers can provide the public with information about their clinical trials by using the Clinical Trials Listing Serviceprovided through CenterWatch, or look up more specific information on medicines and equipment using Drug and Device Pipeline News. Overall, the mission of CenterWatch is to be the leading source of news, directories, analysis, and proprietary market research for clinical research professionals and patients. It is located in Boston, MA. :NIF thanks the :Parkinson's Disease Foundation : :for their referral of this resource to us. | drug information, drug study, clinical research, clinical study, clinical trial, medicine, patient, health, medical | nif-0000-11641 | SCR_001158 | CenterWatch | 2026-08-10 09:31:22 | 9 | ||||||||||
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Cambridge Structural Data Base Resource Report Resource Website 100+ mentions |
Cambridge Structural Data Base (RRID:SCR_007310) | CSD | data or information resource, database, software resource |
It records bibliographic, chemical and crystallographic information for organic molecules and metal-organic compounds whose 3D structures have been determined using X-ray diffraction and neutron diffraction. The CSD records results of single crystal studies and powder diffraction studies which yield 3D atomic coordinate data for at least all non-H atoms. In some cases the CCDC is unable to obtain coordinates, and incomplete entries are archived to the CSD. The CSD includes crystal structure data arising from: * publications in the open literature * Private Communications to the CSD (via direct data deposition) The Cambridge Structural Database System (CSDS) is a single product that comprises the following components: The Cambridge Structural Database (CSD); CSDS Software: search and information retrieval (ConQuest), structure visualization (Mercury), statistical analysis of retrieved data (VISTA), and software for database creation (PreQuest); Knowledge bases derived from the CSD: Mogul (intramolecular geometry) and IsoStar (intermolecular interactions, including data from the PDB). Cambridge Structural Database (CSD) is the world repository of small-molecule crystal structures. For example, the crystal structures supported by the National Institute on Drug Abuse are deposited here. |
3d structure, crystal, crystal studies, csd, metal-organic compounds, neutron diffraction, organic molecules, powder diffraction, x-ray diffraction |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing has parent organization: University of Cambridge; Cambridge; United Kingdom |
DOI:10.25504/FAIRsharing.vs7865, r3d100010197, nif-0000-00174, DOI:10.5517, DOI:10.25505, DOI:10.17616/R36011 | http://www.ccdc.cam.ac.uk/products/csd/, https://doi.org/10.17616/R30P93, https://doi.org/10.17616/r36011, https://doi.org/10.5517/, &&https://doi.org/10.25505/, , https://dx.doi.org/10.5517/, https://dx.doi.org/10.25505/, https://fairsharing.org/10.25504/FAIRsharing.vs7865, https://doi.org/10.17616/R36011 | SCR_007310 | Cambridge Structural Database | 2026-08-10 09:33:13 | 132 | |||||||
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Biological General Repository for Interaction Datasets (BioGRID) Resource Report Resource Website 1000+ mentions |
Biological General Repository for Interaction Datasets (BioGRID) (RRID:SCR_007393) | BioGRID | data or information resource, database | Curated protein-protein and genetic interaction repository of raw protein and genetic interactions from major model organism species, with data compiled through comprehensive curation efforts. | budding yeast, fission yeast, protein, gene, protein interaction, genetic interaction, model organism, interaction, dataset, gene annotation, phenotype, orthologous interaction, yeast, cellular interaction network, physical interaction, protein-peptide, protein-rna, protein-protein interaction, genetics, publication, raw protein, genetic interaction, web service, pathway, network, biology, gene mapping, statistics, bio.tools, FASEB list |
is used by: NIF Data Federation is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: OMICtools is listed by: DataCite is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions is related to: Pathway Commons is related to: Cytoscape is related to: Interaction Reference Index is related to: ConsensusPathDB is related to: FlyMine is related to: IMEx - The International Molecular Exchange Consortium is related to: Integrated Molecular Interaction Database is related to: PSICQUIC Registry is related to: PSI-MI is related to: NIH Data Sharing Repositories is related to: Agile Protein Interactomes DataServer is related to: Integrated Manually Extracted Annotation has parent organization: Princeton University; New Jersey; USA has parent organization: University of Edinburgh; Scotland; United Kingdom has parent organization: University of Montreal; Quebec; Canada works with: IMEx - The International Molecular Exchange Consortium |
NCRR R01 RR024031; NHGRI HG02223; Canadian Institutes of Health Research ; BBSRC ; NIH Office of the Director R24 OD011194 |
PMID:23203989 PMID:21071413 PMID:16381927 PMID:12620108 |
Free, Freely available | nif-0000-00432, r3d100010350, OMICS_01901, biotools:the_grid | https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources, https://bio.tools/the_grid, https://doi.org/10.17616/R34C7G | SCR_007393 | , BioGRID, Biological General Repository for Interaction Datasets | 2026-08-10 09:33:07 | 2824 | ||||
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eMERGE Network: electronic Medical Records and Genomics Resource Report Resource Website 1+ mentions |
eMERGE Network: electronic Medical Records and Genomics (RRID:SCR_007428) | eMERGE | data or information resource, topical portal, portal | A national consortium formed to develop, disseminate, and apply approaches to research that combine DNA biorepositories with electronic medical record (EMR) systems for large-scale, high-throughput genetic research. The consortium is composed of seven member sites exploring the ability and feasibility of using EMR systems to investigate gene-disease relationships. Themes of bioinformatics, genomic medicine, privacy and community engagement are of particular relevance to eMERGE. The consortium uses data from the EMR clinical systems that represent actual health care events and focuses on ethical issues such as privacy, confidentiality, and interactions with the broader community. | human, clinical, dna, alzheimer's disease, genome, genomics, gene, genetic, nervous system disease, nucleotide polymorphism, phenotype, bioinformatics, genomic medicine, privacy, community engagement, emr, electronic medical record |
is related to: PheKB is related to: NCBI database of Genotypes and Phenotypes (dbGap) is related to: PheWAS Catalog has parent organization: Vanderbilt University; Tennessee; USA |
Aging | NIGMS ; NHGRI |
Available to the research community | nif-0000-00539 | SCR_007428 | eMERGE Network: electronic Medical Records & Genomics - A consortium of biorepositories linked to electronic medical records data for conducting genomics studies, eMERGE Network: electronic Medical Records Genomics, eMERGE Network: electronic Medical Records & Genomics, eMERGE Network, electronic Medical Records & Genomics, The eMERGE Network: electronic Medical Records & Genomics | 2026-08-10 09:33:08 | 2 | |||||
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Atlases of the Brain Resource Report Resource Website |
Atlases of the Brain (RRID:SCR_007293) | data or information resource, training resource, atlas | Brain atlas in sagittal, coronal, and axial planes some from myelin stained sections, others from MRI. The structures are outlined and labeled on the zoomable images in the coronal series. The labels can also be used in quiz mode. Designed as part of of program for second year medical students studying neuroanatomy. | neuroanatomy | has parent organization: University of Utah; Utah; USA | nif-0000-00092 | SCR_007293 | Atlases of the Brain | 2026-08-10 09:33:06 | 0 | |||||||||
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LONI Image and Data Archive Resource Report Resource Website 100+ mentions |
LONI Image and Data Archive (RRID:SCR_007283) | IDA, LONI IDA, | data or information resource, database, image collection | Archive used for archiving, searching, sharing, tracking and disseminating neuroimaging and related clinical data. IDA is utilized for dozens of neuroimaging research projects across North America and Europe and accommodates MRI, PET, MRA, DTI and other imaging modalities. | data storage, mri, pet, mra, dti, neuroimaging, image storage, histology, fmri, spect, normal, control, alzheimer's disease, mild cognitive impairment, data sharing, clinical, protection, brain, cryosection, FASEB list |
is recommended by: National Library of Medicine is listed by: NIH Data Sharing Repositories |
Control, Autism, Parkinson's disease, Alzheimer's disease, Mild Cognitive Impairment, Normal control, Aging | NIBIB | Restricted | nif-0000-00040, r3d100012840 | https://ida.loni.usc.edu/login.jsp?search=true, https://doi.org/10.17616/R39N6D | https://ida.loni.ucla.edu/login.jsp | SCR_007283 | , IDA, LONI Database, LONI, Image Data Archive | 2026-08-10 09:33:05 | 113 | |||
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3DViewnix Resource Report Resource Website 1+ mentions |
3DViewnix (RRID:SCR_007351) | 3DViewnix | software application, d visualization software, data processing software, software resource | Data-, machine-, and application- independent software system for the visualization and analysis of multidimensional images. This transportable, very inexpensive software system, has capabilities for visualizing, manipulating, and analyzing multidimensional, multimodality image information. It is designed to run on Unix machines under X-windows. It uses a data protocol that is a multidimensional generalization of the ACR-NEMA standards. We have tested it extensively on SGI and Sun workstations and PCs. Other recipients of 3DVIEWNIX have installed it on a variety of platforms including IBM RS6000s, HP700s, and Stardent, all from a single source code version. UNIQUE FEATURES OF 3DVIEWNIX * Transportable - based on UNIX, X-window, and C * Based on multidimensional generalization of ACR-NEMA standards of data representation * Application-independent * Image dimensionality independent * Can handle rigid, non-rigid, static, and dynamic objects and object assemblies * Can handle object information from multiple modalities and longitudinal acquisitions * Multitudes of visualization, manipulation, and analysis methods incorporated * Open software system distributed with source code | 3d imaging, registration, segmentation, visualization, volume, multi-modal, image |
is listed by: 3DVC is listed by: Biositemaps has parent organization: University of Pennsylvania; Philadelphia; USA |
PMID:12821028 | Open software system distributed with source code | nif-0000-00257 | SCR_007351 | 2026-08-10 09:33:14 | 1 | |||||||
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Vision Public Information Network Resource Report Resource Website |
Vision Public Information Network (RRID:SCR_007340) | data or information resource, topical portal, portal | The National Eye Institute (NEI) created the VISION Public Information Network for the purpose of communicating with public information officers at NEI grantee institutions. The Network''s primary mission is to work with the NEI in disseminating research results to the national and local media. The Network also works to inform the public of the mission of the National Institutes of Health (NIH) to improve the health of America through medical research. The NEI is part of the NIH, U.S. Department of Health and Human Services (DHHS). General information portal for eye and vision related resources for the public. Sponsors: This resource is supported by the National Eye Institute. | eye, grant, health, human, information, media, medical, network, research, vision | has parent organization: National Eye Institute (NEI) Commons | nif-0000-00236 | SCR_007340 | Vision Network | 2026-08-10 09:33:13 | 0 | |||||||||
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Xvoxtrace Resource Report Resource Website |
Xvoxtrace (RRID:SCR_007377) | software application, data processing software, image processing software, software resource | Xvoxtrace enables volume segmentation of tomographic data using manual tracing. This program allows the researcher to outline features on individual planes of the volume while being guided by simultaneous views of the tracing displayed on a volume rendering or tilt-series. Traced contours can be viewed using XDend or used to generate surfaces for viewing in Synu. Basic Requirements:OpenGL, X windows, and Linux platforms : : | has parent organization: National Center for Microscopy and Imaging Research | nif-0000-00354 | SCR_007377 | Xvoxtrace | 2026-08-10 09:33:14 | 0 | ||||||||||
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Informatics resources for mouse functional genomics Resource Report Resource Website |
Informatics resources for mouse functional genomics (RRID:SCR_007374) | data or information resource, topical portal, portal | Over recent years, the European Commission has supported an increasing number of functional genomics projects focusing on the use of the laboratory mouse as a model of human disease. (see http://www.prime-eu.org/euromouseiiprojects.htm for a fuller listing of current and recent projects). CASIMIR (Coordination and Sustainability of International Mouse Informatics Resources: http://www.casimir.org.uk) is aimed at recommending standards to allow data sharing and integration between the different projects. CASIMIR spans a number of areas: data representation (in particular the use of shared ontologies), non-semantic, technical issues concerning database compatibility and interoperability, data acquisition, curation and ownership, integration of biological collections and material resources into the data network, and user interactions. As part of the CASIMIR initiative i-mouse.org was created as a common portal to CASIMIR and other resources we hope will be helpful for investigators using the mouse as a model system for humans or systems biologists and geneticists using the mouse as an experimental system. ontology; metadata; | nif-0000-00364 | SCR_007374 | I-Mouse | 2026-08-10 09:33:14 | 0 |
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