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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Progeria Cell and Tissue Bank
 
Resource Report
Resource Website
1+ mentions
Progeria Cell and Tissue Bank (RRID:SCR_004194) PRF Cell and Tissue Bank biomaterial supply resource, tissue bank, material resource The PRF Cell & Tissue Bank provides medical researchers with genetic and biological material from Progeria patients and their families, so that research on Progeria and other age-related diseases can be performed. We''ve been hard at work with the families and their physicians to gather these precious biological materials. As you know, Hutchinson-Gilford Progeria Syndrome is an extremely rare condition. Thus while access to cell lines is essential for studying the biology and genetics of the disorder, there are very few cell lines in existence. Because an integral part of PRF''s mission is to stimulate interest in, and NIH funding opportunities for, Progeria research, there is an increased need for cell lines. The PRF Cell Bank will ensure that need is met! The goals of The PRF Cell & Tissue Bank are to promote: * Sufficient availability of cells for approved research projects * Incentive for new research projects * Study of the biochemical basis for Hutchinson-Gilford Progeria Syndrome * Discoveries leading to new treatments for children with Progeria * Discovery of a cure for Progeria is listed by: One Mind Biospecimen Bank Listing
has parent organization: Progeria Research Foundation
Progeria nlx_22169 SCR_004194 PRF Cell Tissue Bank, Progeria Cell Tissue Bank, Progeria Research Foundation Cell Tissue Bank, Progeria Research Foundation Cell and Tissue Bank, PRF Cell & Tissue Bank 2026-08-11 09:40:55 2
GENEWIZ
 
Resource Report
Resource Website
1000+ mentions
GENEWIZ (RRID:SCR_003177) service resource, analysis service resource, material analysis service, production service resource Commercial organization for research and development genomics services and technical support to researchers. genomics, research support, research services, company Free, Freely available nif-0000-30606 SCR_003177 GENEWIZ Inc 2026-08-11 09:40:41 4428
T-profiler
 
Resource Report
Resource Website
10+ mentions
T-profiler (RRID:SCR_003452) T-profiler service resource, analysis service resource, data analysis service, production service resource One of the key challenges in the analysis of gene expression data is how to relate the expression level of individual genes to the underlying transcriptional programs and cellular state. The T-profiler tool hosted on this website uses the t-test to score changes in the average activity of pre-defined groups of genes. The gene groups are defined based on Gene Ontology categorization, ChIP-chip experiments, upstream matches to a consensus transcription factor binding motif, and location on the same chromosome, respectively. If desired, an iterative procedure can be used to select a single, optimal representative from sets of overlapping gene groups. A jack-knife procedure is used to make calculations more robust against outliers. T-profiler makes it possible to interpret microarray data in a way that is both intuitive and statistically rigorous, without the need to combine experiments or choose parameters. Currently, gene expression data from Saccharomyces cerevisiae and Candida albicans are supported. Users can submit their microarray data for analysis by clicking on one of the two organism-specific tabs above. Platform: Online tool expression, gene, binding, cellular, transcriptional, gene expression, microarray, gene ontology, transcription factor, binding motif, chip-chip, chip, motif, t-test, statistical analysis, transcriptome, bio.tools is listed by: Biositemaps
is listed by: Gene Ontology Tools
is listed by: Debian
is listed by: bio.tools
is related to: Gene Ontology
has parent organization: Columbia University; New York; USA
has parent organization: University of Amsterdam; Amsterdam; Netherlands
Netherlands Foundation for Technical Research APB.5504;
NHGRI R01HG003008
PMID:15980543 Free for academic use nif-0000-33354, biotools:t-profiler https://bio.tools/t-profiler SCR_003452 T-profiler: Scoring the Activity of Pre-defined Groups of Genes Using Gene Expression Data 2026-08-11 09:40:47 11
Retina Project
 
Resource Report
Resource Website
1+ mentions
Retina Project (RRID:SCR_002884) Retina Project data or information resource, atlas, spatially referenced dataset Collection of images from cell type-specific protein expression in retina using BAC transgenic mice. Images from cell type-specific protein expression in retina using BAC transgenic mice from GENSAT project. electrophysiology, protein expression, fluorescent, gene, amacrine cell, astrocyte, bipolar cell, blood vessel, brain, cell, ganglion cell layer, central nervous system, circuit, horizontal cell, hybridization, microglia, adult mouse, muller cell, neocortex, neuronal, photoreceptor, protein, recombinase, retina, spinal cord, mutant mouse strain, bac, retinal cell, cell type, night vision, direction, neuronal circuitry, connectivity, image collection is used by: NIF Data Federation
has parent organization: GENSAT at NCBI - Gene Expression Nervous System Atlas
Department Of Health And Human Services ;
NINDS N01 NS02331
PMID:19648912 Free, Freely available nif-0000-25587 SCR_002884 GENSAT Retina Project, Retina Project from GENSAT, The Retina Project, The Retina Project from GENSAT, GENSAT - Retina Project 2026-08-11 09:40:38 2
Distant Regulatory Elements
 
Resource Report
Resource Website
10+ mentions
Distant Regulatory Elements (RRID:SCR_003058) DiRE service resource, analysis service resource, data analysis service, production service resource Web server based on the Enhancer Identification (EI) method, to determine the chromosomal location and functional characteristics of distant regulatory elements (REs) in higher eukaryotic genomes. The server uses gene co-expression data, comparative genomics, and combinatorics of transcription factor binding sites (TFBSs) to find TFBS-association signatures that can be used for discriminating specific regulatory functions. DiRE's unique feature is the detection of REs outside of proximal promoter regions, as it takes advantage of the full gene locus to conduct the search. DiRE can predict common REs for any set of input genes for which the user has prior knowledge of co-expression, co-function, or other biologically meaningful grouping. The server predicts function-specific REs consisting of clusters of specifically-associated TFBSs, and it also scores the association of individual TFs with the biological function shared by the group of input genes. Its integration with the Array2BIO server allows users to start their analysis with raw microarray expression data. regulatory element, enhancer identification, genome, prediction, transcription factor binding site, gene, co-expression, co-function, function, transcription factor, comparative genomics, regulatory function, gene locus, chromosome, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: NCBI
NLM ;
Intramural Research Program
PMID:18487623 Free, Freely available nif-0000-30448, biotools:dire https://bio.tools/dire SCR_003058 Distant Regulatory Elements of co-regulated genes 2026-08-11 09:40:41 25
WoLF PSORT
 
Resource Report
Resource Website
100+ mentions
WoLF PSORT (RRID:SCR_002472) WoLF PSORT service resource, analysis service resource, data analysis service, production service resource Data analysis service for protein subcellular localization prediction. subcellular localization, protein is listed by: OMICtools Restricted OMICS_01637 SCR_002472 WoLF PSORT - Protein Subcellular Localization prediction 2026-08-11 09:40:32 166
Cleveland Clinic Genomic Medicine Biorepository
 
Resource Report
Resource Website
1+ mentions
Cleveland Clinic Genomic Medicine Biorepository (RRID:SCR_004136) GMB biomaterial supply resource, tissue bank, material resource A biorepository is a place where investigators can deposit and store biological material, in this case samples derived from patients. Moreover, the Genomic Medicine Institute (GMI) takes this basic concept and elevates it to make the Genomic Medicine Biorepository (GMB) a full-service processing and banking laboratory that serves as the foundation for evidence-based research for the GMI, the Cleveland Clinic, and our collaborators. The process relies on a team of multi-disciplinary professionals coordinating their efforts in order to streamline medical research. This begins with dedicated physicians and genetic counselors identifying individuals with specific medical conditions indicating the possibility of genetic involvement. Once identified, biological material (e.g. blood, tissue, or saliva) is collected under the care of the patient''s doctor or by our clinicians and sent to the GMB. Once in the lab, the patient and their samples are assigned a unique identifier (to protect the patient''s personal information) and logged into a central database. This unique identifier accompanies all samples processed and banked for that individual. The specimens are then processed into research-relevant samples using proven laboratory techniques and state-of-the-art quality control practices. These samples include the isolation of DNA and RNA from white blood cells for genetic studies; collection of plasma for proteomic studies; and initiated immortalized cell lines from lymphocytes for in-vitro studies and biochemical research. These cell lines are able to be indefinitely stored in cryogenic suspension and are invaluable as a renewable resource for genetic and biochemical research. The GMB also processes genetic material from various tissues (both fresh and archived). Charis Eng, MD, PhD, Chair and Director of the GMI, has been the faculty oversight person of a human biorepository for the last eight years. Since then, our biorepository has received, cataloged, processed, and banked, in excess of 25,000 specimens. These samples are of numerous tissue types from patients and their family members located all over the world. Our biorepository has managed samples that have resulted in more than 150 original peer reviewed articles and greater than $25 million total direct costs in extramural funding over the last four years alone. blood, tissue, saliva, dna, rna, plasma, cell line, cryogenic suspension, patient, family member, research is listed by: One Mind Biospecimen Bank Listing
has parent organization: Cleveland Clinic
Patient, Family member Private and Collaborators: Serves the Genomic Medicine Institute, The Cleveland Clinic, And our collaborators. nlx_59927 SCR_004136 Cleveland Clinic Genomic Medicine Institute Biorepository, GMI Biorepository, Genomic Medicine Biorepository, Genomic Medicine Institute Biorepository, Cleveland Clinic GMI Biorepository 2026-08-11 09:40:55 1
Semantic Automated Discovery and Integration
 
Resource Report
Resource Website
1+ mentions
Semantic Automated Discovery and Integration (RRID:SCR_004130) SADI source code, software resource, service resource Framework for discovery of, and interoperability between, distributed data and analytical resources. It combines GET/POST-based Web Services with standards from the W3C Semantic Web initiative. The objective is to make it easy for data and analytical tool providers to make their resources available on the Semantic Web with minimal disruption to their usual practices. It simply defines an open set of best-practices and conventions, within the spectrum of existing standards, that allow for a high degree of semantic discoverability and interoperability between participating services. interoperability framework, discovery framework, interoperability software has parent organization: University of British Columbia; British Columbia; Canada CANARIE ;
Heart and Stroke Foundation of B.C. and Yukon ;
Canadian Institutes of Health Research ;
Microsoft Research
PMID:21210986 Open source nlx_143562 SCR_004130 Semantic Automated Discovery and Integration (SADI), SADI - Semantic Automated Discovery and Integration 2026-08-11 09:40:55 3
Mouse Connectome Project
 
Resource Report
Resource Website
10+ mentions
Mouse Connectome Project (RRID:SCR_004096) MCP data or information resource, database, atlas Three-dimensional digital connectome atlas of the C57Black/6J mouse brain and catalog of neural tracer injection cases, which will eventually cover the entire brain. Serial sections of each case are available to view at 10x magnification in the interactive iConnectome viewer. The Image Gallery provides a glimpse into some of the highlights of their data set. Representative images of multi-fluorescent tracer labeling can be viewed, while more in depth examination of these and all other cases can be performed in the iConnectome viewer. Phase 1 of this project involves generating a physical map of the basic global wiring diagram by applying proven, state of the art experimental circuit tracing methods systematically, uniformly, and comprehensively to the structural organization of all major neuronal pathways in the mouse brain. Connectivity imaging data for the whole mouse brain at cellular resolution will be presented within a standard 3D anatomic frame available through the website and accompanied by a comprehensive searchable online database. A Phase 2 goal for the future will allow users to view, search, and generate driving direction-like roadmaps of neuronal pathways linking any and all structures in the nervous system. This could be looked on as a pilot project for more ambitious projects in species with larger brains, such as human, and for providing a reliable framework for more detailed local circuitry mapping projects in the mouse. tract tracing assay, adult mouse, connectivity, c57bl/6j, brain, olfactory bulb, piriform cortical area, lateral olfactory tract, connectome, neuronal tract tracing, nissl, image collection is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Mouse Biomedical Informatics Research Network
is related to: BICCN
has parent organization: Laboratory of Neuro Imaging
NIMH MH094360-01A1;
NCRR 3P41RR013642-12S3
PMID:22891053 LONI Software License nlx_143548 http://www.nitrc.org/projects/mcp SCR_004096 UCLA Mouse Project 2026-08-11 09:40:51 30
eScholarship
 
Resource Report
Resource Website
500+ mentions
eScholarship (RRID:SCR_002624) eScholarship data or information resource, bibliography, service resource Provides comprehensive publication services for Univeristy of California affiliated departments, research units, publishing programs, and individual scholars who seek to publish original, open access journals, books, conference proceedings, and other scholarship. Content is delivered via research platform and is available to scholars worldwide. California Digital Library, publication, scholarly communication, publish, book, journal, working paper, conference, scholarship, publishing service, is listed by: FORCE11
is listed by: DataCite
has parent organization: California Digital Library
has parent organization: University of California; California; USA
Free, Freely available nlx_156042 https://api.datacite.org/dois?prefix=10.34940 SCR_002624 CDL eScholarship 2026-08-11 09:40:34 531
Human Gene Connectome Server
 
Resource Report
Resource Website
1+ mentions
Human Gene Connectome Server (RRID:SCR_002627) HGCS service resource, analysis service resource, data analysis service, production service resource An interactive web server that enables researchers to prioritize any list of genes by their biological proximity to defined core genes (i.e. genes that are known to be associated with the phenotype), and to predict novel gene pathways. gene, disease, phenotype, genome, connectome, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: Human Gene Connectome
PMID:23509278 Free nlx_156049, biotools:hgcs https://bio.tools/hgcs SCR_002627 2026-08-11 09:40:40 8
Center for Organ Recovery and Education - CORE
 
Resource Report
Resource Website
10+ mentions
Center for Organ Recovery and Education - CORE (RRID:SCR_004317) CORE biomaterial supply resource, tissue bank, material resource The Center for Organ Recovery & Education (CORE) is one of 58 federally designated agencies in the United States known as a not-for-profit organ procurement organization (OPO). CORE is dedicated to promoting donation, education and research for the purpose of saving and improving the quality of life through organ, tissue and corneal transplantation. An innovative, responsive OPO, CORE plays a pivotal role between potential donors and patients awaiting transplantation. In addition to talking with families about the opportunity to donate, CORE coordinates the surgical recovery of organs, tissue and corneas, as well as the computerized matching of donated organs and placement of corneas. In 1995, CORE created the first donor card database in Pennsylvania. In 1996, the organization added tissue recovery and eye banking services to its organ recovery component. It enhanced its line of services by opening an internal laboratory in 1997, where CORE performs the necessary tests to help determine if the organs, tissue and corneas are healthy for transplantation. Since its inception more than 30 years ago, CORE has helped to provide more than 300,000 organs, tissue and corneas for transplantation. The chances for renewed health provided through CORE would not be possible without those who have said yes to donation. is listed by: One Mind Biospecimen Bank Listing
has parent organization: Donate Life America
nlx_32737 SCR_004317 Center for Organ Recovery and Education, Transplant Organ Procurement Foundation of Western Pennsylvania, Center for Organ Recovery & Education, Pittsburgh Transplant Foundation 2026-08-11 09:40:54 12
Susan G. Komen Tissue Bank
 
Resource Report
Resource Website
1+ mentions
Susan G. Komen Tissue Bank (RRID:SCR_004708) KTB biomaterial supply resource, tissue bank, material resource The goals of the Susan G. Komen for the Cure Tissue Bank at the IU Simon Cancer Center are to acquire biomolecule and tissue specimens from the entire continuum of breast development: puberty to menopause and to make these specimens or the digital data derived from them available and accessible to researchers across the globe. is listed by: One Mind Biospecimen Bank Listing
has parent organization: Indiana University; Indiana; USA
has parent organization: Susan G. Komen for the Cure
Breast cancer nlx_70500 SCR_004708 Tissue Bank at the IU Simon Cancer Center, Susan G. Komen for the Cure Tissue Bank, Komen Tissue Bank 2026-08-11 09:40:59 8
LifeSource
 
Resource Report
Resource Website
1+ mentions
LifeSource (RRID:SCR_004702) LifeSource biomaterial supply resource, tissue bank, material resource LifeSource is the non-profit organization dedicated to saving lives through organ and tissue donation in the Upper Midwest. We serve more than 6 million people in communities across Minnesota, North Dakota, South Dakota and portions of western Wisconsin. As the federally-designated organization that manages organ and tissue donation in our region, we are dedicated to working with our hospital and community partners to support donor families, facilitate the donation of organs and tissues to transplant recipients and encourage the people in our communities to register as donors. is listed by: One Mind Biospecimen Bank Listing nlx_69466 SCR_004702 2026-08-11 09:40:59 4
Stanford Tissue Bank
 
Resource Report
Resource Website
1+ mentions
Stanford Tissue Bank (RRID:SCR_004615) Stanford Tissue Bank biomaterial supply resource, tissue bank, material resource The Stanford Tissue Bank was established with seed funding from the Bio-X Program and the Department of Pathology, and currently receives support from the Stanford Cancer Institute. The goal of the Tissue Bank is to facilitate biomedical research using tissues at Stanford, by providing services for the procurement, storage, distribution, and study of tissues. Current Tissue Bank activities and services include collecting and banking freshly-frozen tissue specimens from excess surgical material and from autopsy, providing fresh tissue specimens for viable cell studies, processing and banking blood components, maintaining a tissue database with links to clinicopathological data, performing histological staining and pathological review, and coordinating patient consent and assuring regulatory compliance. As a centralized shared resource, the Tissue Bank adds value through experience, efficiency, standardization, accountability, protection of patient confidentially, and timely completion of research. An oversight committee serves to guide policies, prioritize resources, and review service requests to ensure equitable usage. paraffin tissue, frozen tissue, fresh tissue, serum, plasma, leukocyte dna, h&e-stained, unstained, paraffin is listed by: One Mind Biospecimen Bank Listing
has parent organization: Stanford University School of Medicine; California; USA
Stanford University; California; USA ;
Bio-X Program ;
Department of Pathology ;
Stanford Cancer Institute
nlx_61352 SCR_004615 2026-08-11 09:41:00 2
AIDS and Cancer Specimen Resource
 
Resource Report
Resource Website
10+ mentions
AIDS and Cancer Specimen Resource (RRID:SCR_004216) ACSR biomaterial supply resource, tissue bank, material resource A biorepository for HIV-infected human biospecimens from a wide spectrum of HIV-related or associated diseases, including cancer, and from appropriate HIV-negative controls. The ACSR has formalin-fixed paraffin embedded biospecimens, fresh frozen biospecimens, malignant cell suspensions, fine needle aspirates, and cell lines from patients with HIV-related malignancies. It also contains serum, plasma, urine, bone marrow, cervical and anal specimens, saliva, semen, and multi-site autopsy speicmens from patients with HIV-related malignancies including those who have participated in clinical trials. The ACSR has an associated databank that contains prognostic, staging, outcome and treatment data on patients from whom tissues were obtained. The ACSR database contains more than 300,000 individual biospecimens with associated clinical information. Biospecimens are entered into the ACSR database by processing type, disease category, and number of cases defined by disease category. aids, hiv, cancer, virology, immunology, pathology, epidemiology, tumor, assay development, clinical data, clinical, tumor tissue, biological fluid, bodily fluid, malignant cell suspension, fine needle aspirate, cell line, serum, plasma, urine, bone marrow, cervical specimen, anal specimen, saliva, semen is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of California at San Francisco; California; USA
AIDS, Cancer, HIV-associated malignancy, HIV NCI nlx_23946 http://acsr.ucsf.edu/Home/tabid/37/Default.aspx SCR_004216 ACSR - AIDS and Cancer Specimen Resource 2026-08-11 09:40:57 15
Wales Cancer Bank
 
Resource Report
Resource Website
1+ mentions
Wales Cancer Bank (RRID:SCR_004331) Wales Cancer Bank biomaterial supply resource, tissue bank, material resource The Wales Cancer Bank aims to collect samples of tumour, normal tissue and blood from all patients in Wales who are undergoing an operation to remove tissue where cancer is a possible diagnosis. These samples will be banked to build up a research resource that will be used by research groups to help understand the molecular mechanisms involved in cancer and work towards the selection of optimum targeted treatment for individuals. The Wales Cancer Bank is licensed by the Human Tissue Authority (license 12107) to store human tissue for research and has ethics approval from the Wales Multicentre Research Ethics Committee to collect and issue samples for cancer related research. is listed by: One Mind Biospecimen Bank Listing Cancer nlx_34879 SCR_004331 2026-08-11 09:41:00 4
Canadian Breast Cancer Foundation Tumor Bank
 
Resource Report
Resource Website
1+ mentions
Canadian Breast Cancer Foundation Tumor Bank (RRID:SCR_004214) CBCF TB biomaterial supply resource, tissue bank, material resource THIS RESOURCE IS NO LONGER IN SERVICE, documented May 18, 2022. A tumor bank that provides a large collection of cancer specimens, from breast and other cancers, annotated with clinical information. The CBCF TB enables researchers to address unanswered questions concerning the prognosis and treatment of breast cancer and other cancers. The CBCF TB website is also directed to participants interested in donating tumor tissue or blood. Biological specimens such as blood, urine, bone marrow, and ascites (fluid that sometimes collects in the abdomen) contain genetic information, just as tumor tissue does. These samples can be used in studies that may help researchers see how people with certain genetic make-ups respond to certain treatments. It can also explain why different people have different health problems. CBCF TB, formerly ARTB, was created by a merger of components of two existing Tumor-banking initiatives, the CLS Repository in Calgary and the Tumor bank of the PolyomX Program in Edmonton. clinical information, clinical is listed by: One Mind Biospecimen Bank Listing
is related to: Canadian Tumour Repository Network
has parent organization: Canadian Breast Cancer Foundation
Breast cancer, Tumor, Cancer Canadian Breast Cancer Foundation ;
Alberta Cancer Foundation
THIS RESOURCE IS NO LONGER IN SERVICE nlx_143637 http://www.abtumorbank.com/ SCR_004214 Canadian Breast Cancer Foundation Alberta Research Tumor Bank, ARTB, CBCF Tumor Bank, Alberta Research Tumor Bank 2026-08-11 09:40:56 3
ProFunc
 
Resource Report
Resource Website
50+ mentions
ProFunc (RRID:SCR_004450) ProFunc service resource, analysis service resource, data analysis service, production service resource The ProFunc server had been developed to help identify the likely biochemical function of a protein from its three-dimensional structure. It uses both sequence- and structure-based methods including fold matching, residue conservation, surface cleft analysis, and functional 3D templates, to identify both the protein''''s likely active site and possible homologues in the PDB. Often, where one method fails to provide any functional insight another may be more helpful. You can submit your own structure, analyze an existing PDB entry, or retrieve the results of a previously submitted run. The files are usually stored for about 6 months before being deleted. However, they are stored on a partition that is not backed up; so, in principle, they could disappear at any time. gold standard is related to: PDBsum
has parent organization: European Bioinformatics Institute
DOE contract W-31-109-Eng-38;
NIGMS GM62414;
European Union FP6 contract LHSG-CT-2003-503265
PMID:15980588
PMID:16019027
nlx_44430 SCR_004450 ProFunc - prediction of protein function from 3D structure, ProFunc: Analysis of a protein''''s 3D structure to help identify its likely biochemical function 2026-08-11 09:41:02 72
GSDS - Golden State Donor Services
 
Resource Report
Resource Website
10+ mentions
GSDS - Golden State Donor Services (RRID:SCR_004605) GSDS biomaterial supply resource, tissue bank, material resource Golden State Donor Services (GSDS) is the nonprofit, federally designated transplant donor network serving two and a half million people in the greater Sacramento area. We are committed to saving and improving lives by connecting one life to another through donation and transplantation. We support potential donor families in their time of loss, provide care for them through the donation process and coordinate the recovery of organs and tissues for transplant. We also provide after-care support to donor families while at the same time working to inspire universal acceptance of donation to ensure every person in need receives the ����??Gift of Life.����?? GSDS'' designated service area includes 11 counties in Northern California, (Amador, Calaveras, Colusa, El Dorado, Nevada, Placer, Sacramento, Sierra, Sutter, Yolo, and Yuba), as well as the communities of Santa Rosa and Reno. Currently GSDS has agreements with 30 hospitals. In Golden State Donor Services'' area, more than 1000 people now wait for an organ transplant, (heart, liver, lungs, kidneys, intestine or pancreas). is listed by: One Mind Biospecimen Bank Listing nlx_60283 SCR_004605 Golden State Donor Services 2026-08-11 09:41:00 41

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