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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Million Veteran Program Resource Report Resource Website 100+ mentions |
Million Veteran Program (RRID:SCR_021731) | MVP | data or information resource, topical portal, portal | National research program to learn how genes, lifestyle, and military exposures affect health and illness. | Genomic dataset, genes, lifestyle, military exposures, affect health, affect illness | Free, Freely available | SCR_021731 | 2026-08-10 09:36:54 | 273 | ||||||||||
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Sample Size Shop Resource Report Resource Website 1+ mentions |
Sample Size Shop (RRID:SCR_021747) | data or information resource, topical portal, portal | Platform for multilevel and longitudinal data.Provide researchers such as behavioral and social scientists with tools and education related to study design including Calculating power and sample size for any univariate or multivariate test for general linear multivariate model, assuming fixed predictors;Producing confidence intervals on power estimates for designs with fixed predictors;Producing power calculations for designs with single Gaussian covariate;Supporting designs with unequal group sizes, and complicated covariance structures;Creating basic power curves. | multilevel data, longitudinal data, calculating power and sample size, producing confidence intervals on power estimates, producing power calculations, creating basic power curves | Free, Freely available | SCR_021747 | 2026-08-10 09:36:55 | 4 | |||||||||||
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Trialdesign Resource Report Resource Website 10+ mentions |
Trialdesign (RRID:SCR_021749) | data or information resource, topical portal, portal | Integrated platform for designing clinical trials. | Clinical trial, education, training, study design, innovative adaptive clinical trial designs | Free, Freely available | SCR_021749 | Trialdesign.org | 2026-08-10 09:36:59 | 17 | ||||||||||
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Microns Explorer Resource Report Resource Website 10+ mentions |
Microns Explorer (RRID:SCR_021678) | data or information resource, topical portal, portal | Portal to release connectivity and functional imaging data collected by consortium of laboratories led by groups at Allen Institute for Brain Science, Princeton University, and Baylor College of Medicine, with support from broad array of teams, coordinated and funded by IARPA MICrONS program. Data include large scale electron microscopy based reconstructions of cortical circuitry from mouse visual cortex, with corresponding functional imaging data from those same neurons. | Connectome, mouse, cortex, electron microscopy, functional imaging data, cortical circuitry reconstruction, neuron |
is related to: Allen Institute for Brain Science is related to: Princeton University; New Jersey; USA is related to: Baylor College of Medicine; Houston; Texas |
IARPA MICrONS | Free, Freely available | SCR_021678 | MICrONS Explorer | 2026-08-10 09:36:54 | 19 | ||||||||
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CIRIquant Resource Report Resource Website 1+ mentions |
CIRIquant (RRID:SCR_021661) | data analysis software, software application, software toolkit, software resource, data processing software | Software Python package for accurate circRNA quantification and differential expression analysis. Comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. | circRNA quantification, differential expression analysis, RNA-Seq data, circular RNA, circular isoform switching events | National Natural Science Foundation of China | DOI:10.1038/s41467-019-13840-9 | Free, Available for download, Freely available | https://sourceforge.net/projects/ciri/files/, https://ciri-cookbook.readthedocs.io/en/latest/CIRIquant_0_home.html# | SCR_021661 | 2026-08-10 09:36:57 | 4 | ||||||||
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eQTL Catalogue Resource Report Resource Website 50+ mentions |
eQTL Catalogue (RRID:SCR_021700) | data or information resource, database, catalog | Catalog provides uniformly processed gene expression and splicing QTLs from all available public studies on human. Expression and splicing QTLs recomputed from public datasets. | Gene expression, splicing QTLs, public datasets, human data, public studies | is related to: Open Targets Genetics Portal | DOI:10.1101/2020.01.29.924266 | Free, Freely available | SCR_021700 | 2026-08-10 09:36:58 | 59 | |||||||||
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Papers with Code Resource Report Resource Website 10+ mentions |
Papers with Code (RRID:SCR_021800) | data or information resource, topical portal, portal | Website devoted to papers that contain machine learning datasets, code, methods and evaluation tables. Done together with community, supported by NLP and ML.All content on this website is openly licenced under CC-BY-SA and everyone can contribute.Also operates specialized portals for papers with code in astronomy, physics, computer sciences, mathematics and statistics. | article, machine learning datasets, code, methods, evaluation tables | Free, Freely available | SCR_021800 | 2026-08-10 09:36:55 | 20 | |||||||||||
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TrainingSpace Resource Report Resource Website 1+ mentions |
TrainingSpace (RRID:SCR_022036) | data or information resource, training resource, portal, online course | Portal that provides multimedia educational content from courses, conference lectures, and laboratory exercises from some of leading neuroscience institutes and societies to be more accessible to global neuroscience community. | Training materials resource, neuroscience multimedia educational content, neuroscience community | Free, Freely available | SCR_022036 | 2026-08-10 09:36:59 | 1 | |||||||||||
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PANC-DB Resource Report Resource Website 1+ mentions |
PANC-DB (RRID:SCR_021860) | data or information resource, topical portal, portal, database | Portal to make all Human Pancreas Analysis Program data available to anyone in research community and to interact with and connect scientific community. Stores clinical, molecular, cellular, immunology, imaging, and pathology data from pancreatic tissue and cell samples from organ donors with and without type 1 or type 2 diabetes. | HIRN, HPAP, Human Pancreas Analysis Program, |
is listed by: NIDDK Information Network (dkNET) is related to: Human Islet Research Network (HIRN) |
Free, Freely available | SCR_021860 | 2026-08-10 09:36:56 | 1 | ||||||||||
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National Microbiome Data Collaborative Resource Report Resource Website 1+ mentions |
National Microbiome Data Collaborative (RRID:SCR_022161) | NMDC | data or information resource, topical portal, portal | Platform facilitates comprehensive discovery of and access to multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science. Multi organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, bioenergy, and environment. Founded to support long term advancement of microbiome science. | Microbiome data exploration and discovery, microbiome data, microbiome data science ecosystem, microbiome data, microbiome data discovery portal, FAIR, FAIRsharing | Free, Freely available | https://github.com/microbiomedata/nmdc-schema | SCR_022161 | 2026-08-10 09:37:01 | 2 | |||||||||
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Arthropoda Assembly Assessment Catalog Resource Report Resource Website 1+ mentions |
Arthropoda Assembly Assessment Catalog (RRID:SCR_021864) | a3cat, A3Cat | data or information resource, database, catalog | Database of metadata and assembly quality metrics for all Arthropod assemblies on NCBI. | Metadata and assembly quality metrics, Arthropod assemblies, NCBI | DOI:10.1101/2021.10.15.464561 | Free, Available for download, Freely available | https://gitlab.com/evogenlab/a3cat-workflow | SCR_021864 | Arthropoda Assembly Assessment Catalogue | 2026-08-10 09:36:56 | 2 | |||||||
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MDAR Resource Report Resource Website |
MDAR (RRID:SCR_022038) | data or information resource, topical portal, portal | MDAR Framework establishes minimum set of requirements in transparent reporting applicable to studies in life sciences. MDAR checklist is tool for authors, editors and others seeking to adopt MDAR framework for transparent reporting in manuscripts and other outputs and designed to provide harmonizing principle for reporting requirements currently in use at various journals. | methods, Materials Design Analysis Reporting, requirements in transparent reporting, manuscript, journal, harmonizing principle for reporting | PMID:33893240 | Free, Freely available | https://www.incf.org/mdar, https://mfr.osf.io/render?url=https://osf.io/xfpn4/?direct%26mode=render%26action=download%26mode=render | SCR_022038 | Materials Design Analysis Reporting | 2026-08-10 09:36:59 | 0 | ||||||||
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Motif Mutation Analysis for Regulatory Genomic Elements Resource Report Resource Website 500+ mentions |
Motif Mutation Analysis for Regulatory Genomic Elements (RRID:SCR_021902) | MMARGE | data analysis software, software application, software toolkit, software resource, data processing software | Software package that integrates genome wide genetic variation with epigenetic data to identify collaborative transcription factor pairs. Optimized to work with chromatin accessibility assays such as ATAC-seq or DNase I hypersensitivity, as well as transcription factor binding data collected by ChIP-seq. Used to identify combinations of cell type specific transcription factors while simultaneously interpreting functional effects of non-coding genetic variation. | genome wide genetic variation, epigenetic data, identify collaborative transcription factor pairs, interpreting functional effects, non-coding genetic variation | NCI CA173903; NIGMS GM085764; NIDDK DK091183; NHLBI R00 123485 |
PMID:29893919 | Free, Available for download, Freely available | SCR_021902 | 2026-08-10 09:37:00 | 608 | ||||||||
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Connect TBI Resource Report Resource Website |
Connect TBI (RRID:SCR_022009) | data or information resource, topical portal, portal | Portal for traumatic brain injury data. Common Data Elements (CDEs) and Unique Data Elements (UDEs) for digital neuropathological data and clinical data that will be collected in all CONNECT-TBI center projects. Goal is to establish multi-center, digital neuropathological data and clinical data reporting network with case accrual from each center project. Collected neuropathological data and clinical data available by sharing with center site investigators approved by Administrative Core and by submitting into FITBIR. Central TBI data repository by collecting digital neuropathological data and clinical data from TBI cases and normal controls at each center and posting library of their holdings. | brain injury, traumatic brain injury, digital neuropathological data, clinical data | Free, Freely available | SCR_022009 | Connect-TBI, THE COLLABORATIVE NEUROPATHOLOGY NETWORK CHARACTERIZING OUTCOMES OF TBI | 2026-08-10 09:36:59 | 0 | ||||||||||
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UK Sheep Genome Mapping Project Resource Report Resource Website 1+ mentions |
UK Sheep Genome Mapping Project (RRID:SCR_002272) | data or information resource, topical portal, portal, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. The project aims to apply genome mapping research to sheep, utilizing previous research in sheep (in other countries) and in other species (in the UK and abroad) to the benefit of the UK sheep industry. The project itself uses existing breeding structures, knowledge of the sheep genome and experimental resources. It has three main aims: i) To use the Suffolk, Texel and Charollais Sire Referencing Schemes to detect and verify quantitative trait loci (QTLs) for growth and carcass composition traits ii) To investigate candidate genes and/or chromosomal regions for associations with production traits. iii) To investigate approaches for optimizing future genotyping strategies within the sire referencing schemes for practical and cost effective application of marker-assisted selection By using commercial breeding populations for the research, immediate application of beneficial results is possible. Potential benefits include increased genetic progress through marker assisted selection which utilizes the genotype information, correction of possible parentage errors (ultimately leading to additional genetic progress) and opportunities for using marker information for product certification. The project will benefit the UK sheep industry by the use of Marker Assisted Selection (MAS) utilizing QTL or gene variants identified in the project. Additional benefits may arise from parentage verification and correction of errors e.g. misallocation of lamb to ewe. In the longer term, opportunities may exist to use markers for quality control, tracing products to their source. The major advantage of the design of this project is that the results are immediately applicable to the breeding schemes within which the QTLs and/or genes are detected. The time lag in the application of the results that is often seen with experimental populations is minimized. The project requires close involvement with the Sire Reference Schemes, in return for their assistance the results have immediate benefit to animals within these groups. | gene, animal, breed, breeding, chromosomal, chromosome, genome, genotype, genotyping, lamb, map, mapping, marker, population, production, region, sheep, specie, structure, trait | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-20995 | SCR_002272 | UKSGMP | 2026-08-10 09:31:40 | 1 | |||||||||
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System for Earth Sample Registration Resource Report Resource Website 10+ mentions |
System for Earth Sample Registration (RRID:SCR_002222) | SESAR | data or information resource, database, catalog | Sample Catalog and Registry for the International Geo Sample Number. SESAR catalogs and preserves sample metadata profiles, and provides access to the sample catalog via the Global Sample Search. | international geo sample number, metadata, sample, biology, gas, liquid, mineral, particulate, rock, sediment, soil, register |
is listed by: CINERGI has parent organization: EarthChem |
NSF | Free, Freely available | nlx_154747, r3d100010420 | https://doi.org/10.17616/R3H89M | SCR_002222 | 2026-08-10 09:31:39 | 14 | ||||||
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GRS Resource Report Resource Website 1+ mentions |
GRS (RRID:SCR_001008) | data analysis software, software application, data management software, software resource, data processing software | A compression tool for efficient storage of Genome Re-Sequencing data. GRS processes genome sequence data without use of reference SNPs and other variants. It can also automatically rebuild the individual genome sequence data using the reference genome sequence. | data analysis software, data management software, compression tool, data compression, storage, genome, resequencing | is listed by: OMICtools | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00960 | SCR_001008 | 2026-08-10 09:31:18 | 2 | |||||||||
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vuTools Resource Report Resource Website |
vuTools (RRID:SCR_001704) | vuTools | software application, data processing software, image processing software, software resource | VUIIS (Vanderbilt University Institute of Imaging Science) Image and Data Analysis Core's data processing tools written for MATLAB and, unless stated otherwise, capable of processing 2D/3D images (matrices). These tools are written for ease of use from within MATLAB. | magnetic resonance, matlab |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Vanderbilt University; Tennessee; USA |
Free, Freely Available | nlx_156025 | SCR_001704 | 2026-08-10 09:31:30 | 0 | ||||||||
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RegulonDB Resource Report Resource Website 100+ mentions |
RegulonDB (RRID:SCR_003499) | RegulonDB | data or information resource, database | Database on transcriptional regulation in Escherichia coli K-12 containing knowledge manually curated from original scientific publications, complemented with high throughput datasets and comprehensive computational predictions. Graphic and text-integrated environment with friendly navigation where regulatory information is always at hand. They provide integrated views to understand as well as organized knowledge in computable form. Users may submit data to make it publicly available. | transcription, gene regulation, operon, bacteria, evolutionary conservation, regulatory phrase, transcriptional regulation, transcriptional regulatory network, bio.tools, FASEB list |
is listed by: OMICtools is listed by: 3DVC is listed by: bio.tools is listed by: Debian has parent organization: National Autonomous University of Mexico; Mexico City; Mexico |
NIGMS GM071962; NIGMS GM077678; Consejo Nacional de Ciencia y Tecnologia 103686; Consejo Nacional de Ciencia y Tecnologia 179997; Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica IN210810; Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica IN209312 |
PMID:23203884 | nif-0000-03399, OMICS_01868, biotools:regulondb | https://bio.tools/regulondb | SCR_003499 | 2026-08-10 09:32:01 | 153 | ||||||
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Brain Canada Resource Report Resource Website 10+ mentions |
Brain Canada (RRID:SCR_005053) | Brain Canada | data or information resource, topical portal, portal, funding resource | Brain Canada is a national non-profit organization that develops and supports collaborative, multidisciplinary, multi-institutional research across the neurosciences. Through partnering with the public, private and voluntary sectors, Brain Canada connects the knowledge and resources available in this area to accelerate neuroscience research and funding and maximize the output of Canada''s world-class scientists and researchers. Brain Canada was created to address the twin challenges of increasing the scale of brain research funding in Canada and widening its scope to encourage interdisciplinary collaboration to produce insights for treating multiple disorders. Brain Canada is built on the successes and model of NeuroScience Canada (NSC). Established in 1999, NSC raised more than $11.5 million, leveraged over $20 million with partnered funding, and funded 100 individual and teams of researchers in Canada. Brain Canada is the new vision for Canadian brain researchthe voice for the brain and the grouping of brain disorders, raising awareness about their prevalence and impact on individuals, families, the economy and society. But most important, through the research we are funding, we are giving hope to the millions of Canadians who are directly or indirectly touched by diseases, disorders, and injuries of the brain, spinal cord and nervous system. | brain, neuroscience, research, brain disorder | is related to: Canadian Open Neuroscience Platform | nlx_144038 | SCR_005053 | Brain Canada Foundation | 2026-08-10 09:32:27 | 11 |
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