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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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HD Neuro-Informatics Resource Report Resource Website 1+ mentions |
HD Neuro-Informatics (RRID:SCR_009493) | HDNI | data or information resource, topical portal, portal | An international effort to establish resources necessary to study the application of neuroimaging measures as (surrogate) biomarkers in Huntington''s Disease (HD). The primary aims are to develop and apply software tools, imaging protocols, quality control procedures, data archiving, data distribution, and participation guidelines that will accelerate existing and prospective imaging studies. | magnetic resonance | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Huntington''s disease | BSD License | nlx_155641 | SCR_009493 | Huntington Disease Nueroimaging Initiative | 2026-08-10 09:33:47 | 2 | ||||||
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DTI BrainImageScope Resource Report Resource Website |
DTI BrainImageScope (RRID:SCR_009559) | dtiBrainScope | software application, data processing software, image processing software, software resource | Software package for processing diffusion tensor imaging data. The following functions are included: 1. Converting imaging data in DICOME format to ANALYZE format 2. Extracting binary brain mask for quick scalp-removing 3. Correcting eddy-current induced distortion 4. Optimized tensor estimation based on noisy diffusion-weighted imaging (DWI) data 5. Scalp removal using a brain mask image 6. Corregistering imaging data and generating deformation field for mapping images from individual spaces to a template or target space 7. Spatial Normalization and Warping DTI 8. Fiber tracking 9. Clustering fiber tracts 10. Identifying brain ventricles and generating binary masks for the baseline and DW imaging data 11. Deriving diffusion anisotropy indices (DAIs) and principal directions (PD) and the corresponding color-coded PD-map. | magnetic resonance, diffusion tensor imaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: INCF Software Center has parent organization: Columbia University; New York; USA |
NIBIB 1R03EB008235-01A1; Shanghai CST 10440710200 |
Other/Commercial license License | nlx_155739 | SCR_009559 | 2026-08-10 09:33:44 | 0 | |||||||
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Behavioral Segmentation of Open-field in DeepLabCut Resource Report Resource Website 1+ mentions |
Behavioral Segmentation of Open-field in DeepLabCut (RRID:SCR_021385) | B-SOiD | data analysis software, software application, software toolkit, software resource, data processing software | Software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.Unsupervised learning algorithm that discovers and classifies actions based on inherent statistics of data points provided. | OpenBehavior, pairs unsupervised pattern recognition, supervised classification, behavior predictions, discovers actions, classifies actions |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut project is related to: Closed Loop Automated Reaching Apparatus |
DOI:10.1101/770271 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/b-soid-unsupervised-behavior-analysis/ | SCR_021385 | B-SOiD v2.0 | 2026-08-10 09:36:48 | 6 | ||||||
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Online Animal Tracker Resource Report Resource Website 1+ mentions |
Online Animal Tracker (RRID:SCR_021412) | OAT | software application, data processing software, image processing software, software resource | Software tool as real time position tracker for behavioral research. Used for processing images, extracting object position information, and streaming data to disk and/or the network in real time. | Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior |
is listed by: OpenBehavior is related to: Online Animal Tracker project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/oat/ | SCR_021412 | 2026-08-10 09:36:50 | 2 | ||||||||
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Platform for Acoustic STArtle Resource Report Resource Website |
Platform for Acoustic STArtle (RRID:SCR_021516) | ratPASTA | software application, software toolkit, data visualisation software, software resource, data processing software | Software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents. | Startle experiments, rodent, experiments measuring rodents grip strength, OpenBehavior |
is listed by: OpenBehavior is related to: Platform for Acoustic STArtle project |
DOI:10.1038/s41598-021-82710-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pasta/, https://github.com/ikodvanj/ratPASTA/ | SCR_021516 | Platform for Acoustic STArtle | 2026-08-10 09:36:51 | 0 | ||||||
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neurotic Resource Report Resource Website |
neurotic (RRID:SCR_021406) | data analysis software, software application, software toolkit, software resource, data processing software | Software Python toolbox for interactive characterization in neuroscience.Users can read in variety of file formats for neural data and video, which they can then process, filter, analyze, annotate and plot.Used to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, supports variety of file formats.Facilitates collaborations by using portable specification for loading and processing data and retrieving data files from online sources.App for Windows, macOS, and Linux to review and annotate electrophysiology data and simultaneously captured video. | Anotate electrophysiology data, interactive characterization, neural data and video, signal data, signal filtering, spike detection, OpenBehavior |
is listed by: OpenBehavior is related to: neurotic project |
DOI:10.1523/eneuro.0085-20.2020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/neurotic/ | SCR_021406 | NEUROscience Tool for Interactive Characterization | 2026-08-10 09:36:50 | 0 | |||||||
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Million Veteran Program Resource Report Resource Website 100+ mentions |
Million Veteran Program (RRID:SCR_021731) | MVP | data or information resource, topical portal, portal | National research program to learn how genes, lifestyle, and military exposures affect health and illness. | Genomic dataset, genes, lifestyle, military exposures, affect health, affect illness | Free, Freely available | SCR_021731 | 2026-08-10 09:36:54 | 273 | ||||||||||
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Sample Size Shop Resource Report Resource Website 1+ mentions |
Sample Size Shop (RRID:SCR_021747) | data or information resource, topical portal, portal | Platform for multilevel and longitudinal data.Provide researchers such as behavioral and social scientists with tools and education related to study design including Calculating power and sample size for any univariate or multivariate test for general linear multivariate model, assuming fixed predictors;Producing confidence intervals on power estimates for designs with fixed predictors;Producing power calculations for designs with single Gaussian covariate;Supporting designs with unequal group sizes, and complicated covariance structures;Creating basic power curves. | multilevel data, longitudinal data, calculating power and sample size, producing confidence intervals on power estimates, producing power calculations, creating basic power curves | Free, Freely available | SCR_021747 | 2026-08-10 09:36:55 | 4 | |||||||||||
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Trialdesign Resource Report Resource Website 10+ mentions |
Trialdesign (RRID:SCR_021749) | data or information resource, topical portal, portal | Integrated platform for designing clinical trials. | Clinical trial, education, training, study design, innovative adaptive clinical trial designs | Free, Freely available | SCR_021749 | Trialdesign.org | 2026-08-10 09:36:59 | 17 | ||||||||||
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Microns Explorer Resource Report Resource Website 10+ mentions |
Microns Explorer (RRID:SCR_021678) | data or information resource, topical portal, portal | Portal to release connectivity and functional imaging data collected by consortium of laboratories led by groups at Allen Institute for Brain Science, Princeton University, and Baylor College of Medicine, with support from broad array of teams, coordinated and funded by IARPA MICrONS program. Data include large scale electron microscopy based reconstructions of cortical circuitry from mouse visual cortex, with corresponding functional imaging data from those same neurons. | Connectome, mouse, cortex, electron microscopy, functional imaging data, cortical circuitry reconstruction, neuron |
is related to: Allen Institute for Brain Science is related to: Princeton University; New Jersey; USA is related to: Baylor College of Medicine; Houston; Texas |
IARPA MICrONS | Free, Freely available | SCR_021678 | MICrONS Explorer | 2026-08-10 09:36:54 | 19 | ||||||||
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CIRIquant Resource Report Resource Website 1+ mentions |
CIRIquant (RRID:SCR_021661) | data analysis software, software application, software toolkit, software resource, data processing software | Software Python package for accurate circRNA quantification and differential expression analysis. Comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. | circRNA quantification, differential expression analysis, RNA-Seq data, circular RNA, circular isoform switching events | National Natural Science Foundation of China | DOI:10.1038/s41467-019-13840-9 | Free, Available for download, Freely available | https://sourceforge.net/projects/ciri/files/, https://ciri-cookbook.readthedocs.io/en/latest/CIRIquant_0_home.html# | SCR_021661 | 2026-08-10 09:36:57 | 4 | ||||||||
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eQTL Catalogue Resource Report Resource Website 50+ mentions |
eQTL Catalogue (RRID:SCR_021700) | data or information resource, database, catalog | Catalog provides uniformly processed gene expression and splicing QTLs from all available public studies on human. Expression and splicing QTLs recomputed from public datasets. | Gene expression, splicing QTLs, public datasets, human data, public studies | is related to: Open Targets Genetics Portal | DOI:10.1101/2020.01.29.924266 | Free, Freely available | SCR_021700 | 2026-08-10 09:36:58 | 59 | |||||||||
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Papers with Code Resource Report Resource Website 10+ mentions |
Papers with Code (RRID:SCR_021800) | data or information resource, topical portal, portal | Website devoted to papers that contain machine learning datasets, code, methods and evaluation tables. Done together with community, supported by NLP and ML.All content on this website is openly licenced under CC-BY-SA and everyone can contribute.Also operates specialized portals for papers with code in astronomy, physics, computer sciences, mathematics and statistics. | article, machine learning datasets, code, methods, evaluation tables | Free, Freely available | SCR_021800 | 2026-08-10 09:36:55 | 20 | |||||||||||
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TrainingSpace Resource Report Resource Website 1+ mentions |
TrainingSpace (RRID:SCR_022036) | data or information resource, training resource, portal, online course | Portal that provides multimedia educational content from courses, conference lectures, and laboratory exercises from some of leading neuroscience institutes and societies to be more accessible to global neuroscience community. | Training materials resource, neuroscience multimedia educational content, neuroscience community | Free, Freely available | SCR_022036 | 2026-08-10 09:36:59 | 1 | |||||||||||
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PANC-DB Resource Report Resource Website 1+ mentions |
PANC-DB (RRID:SCR_021860) | data or information resource, topical portal, portal, database | Portal to make all Human Pancreas Analysis Program data available to anyone in research community and to interact with and connect scientific community. Stores clinical, molecular, cellular, immunology, imaging, and pathology data from pancreatic tissue and cell samples from organ donors with and without type 1 or type 2 diabetes. | HIRN, HPAP, Human Pancreas Analysis Program, |
is listed by: NIDDK Information Network (dkNET) is related to: Human Islet Research Network (HIRN) |
Free, Freely available | SCR_021860 | 2026-08-10 09:36:56 | 1 | ||||||||||
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National Microbiome Data Collaborative Resource Report Resource Website 1+ mentions |
National Microbiome Data Collaborative (RRID:SCR_022161) | NMDC | data or information resource, topical portal, portal | Platform facilitates comprehensive discovery of and access to multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science. Multi organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, bioenergy, and environment. Founded to support long term advancement of microbiome science. | Microbiome data exploration and discovery, microbiome data, microbiome data science ecosystem, microbiome data, microbiome data discovery portal, FAIR, FAIRsharing | Free, Freely available | https://github.com/microbiomedata/nmdc-schema | SCR_022161 | 2026-08-10 09:37:01 | 2 | |||||||||
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Arthropoda Assembly Assessment Catalog Resource Report Resource Website 1+ mentions |
Arthropoda Assembly Assessment Catalog (RRID:SCR_021864) | a3cat, A3Cat | data or information resource, database, catalog | Database of metadata and assembly quality metrics for all Arthropod assemblies on NCBI. | Metadata and assembly quality metrics, Arthropod assemblies, NCBI | DOI:10.1101/2021.10.15.464561 | Free, Available for download, Freely available | https://gitlab.com/evogenlab/a3cat-workflow | SCR_021864 | Arthropoda Assembly Assessment Catalogue | 2026-08-10 09:36:56 | 2 | |||||||
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MDAR Resource Report Resource Website |
MDAR (RRID:SCR_022038) | data or information resource, topical portal, portal | MDAR Framework establishes minimum set of requirements in transparent reporting applicable to studies in life sciences. MDAR checklist is tool for authors, editors and others seeking to adopt MDAR framework for transparent reporting in manuscripts and other outputs and designed to provide harmonizing principle for reporting requirements currently in use at various journals. | methods, Materials Design Analysis Reporting, requirements in transparent reporting, manuscript, journal, harmonizing principle for reporting | PMID:33893240 | Free, Freely available | https://www.incf.org/mdar, https://mfr.osf.io/render?url=https://osf.io/xfpn4/?direct%26mode=render%26action=download%26mode=render | SCR_022038 | Materials Design Analysis Reporting | 2026-08-10 09:36:59 | 0 | ||||||||
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Motif Mutation Analysis for Regulatory Genomic Elements Resource Report Resource Website 500+ mentions |
Motif Mutation Analysis for Regulatory Genomic Elements (RRID:SCR_021902) | MMARGE | data analysis software, software application, software toolkit, software resource, data processing software | Software package that integrates genome wide genetic variation with epigenetic data to identify collaborative transcription factor pairs. Optimized to work with chromatin accessibility assays such as ATAC-seq or DNase I hypersensitivity, as well as transcription factor binding data collected by ChIP-seq. Used to identify combinations of cell type specific transcription factors while simultaneously interpreting functional effects of non-coding genetic variation. | genome wide genetic variation, epigenetic data, identify collaborative transcription factor pairs, interpreting functional effects, non-coding genetic variation | NCI CA173903; NIGMS GM085764; NIDDK DK091183; NHLBI R00 123485 |
PMID:29893919 | Free, Available for download, Freely available | SCR_021902 | 2026-08-10 09:37:00 | 608 | ||||||||
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Connect TBI Resource Report Resource Website |
Connect TBI (RRID:SCR_022009) | data or information resource, topical portal, portal | Portal for traumatic brain injury data. Common Data Elements (CDEs) and Unique Data Elements (UDEs) for digital neuropathological data and clinical data that will be collected in all CONNECT-TBI center projects. Goal is to establish multi-center, digital neuropathological data and clinical data reporting network with case accrual from each center project. Collected neuropathological data and clinical data available by sharing with center site investigators approved by Administrative Core and by submitting into FITBIR. Central TBI data repository by collecting digital neuropathological data and clinical data from TBI cases and normal controls at each center and posting library of their holdings. | brain injury, traumatic brain injury, digital neuropathological data, clinical data | Free, Freely available | SCR_022009 | Connect-TBI, THE COLLABORATIVE NEUROPATHOLOGY NETWORK CHARACTERIZING OUTCOMES OF TBI | 2026-08-10 09:36:59 | 0 |
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