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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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UK Sheep Genome Mapping Project Resource Report Resource Website 1+ mentions |
UK Sheep Genome Mapping Project (RRID:SCR_002272) | data or information resource, topical portal, portal, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. The project aims to apply genome mapping research to sheep, utilizing previous research in sheep (in other countries) and in other species (in the UK and abroad) to the benefit of the UK sheep industry. The project itself uses existing breeding structures, knowledge of the sheep genome and experimental resources. It has three main aims: i) To use the Suffolk, Texel and Charollais Sire Referencing Schemes to detect and verify quantitative trait loci (QTLs) for growth and carcass composition traits ii) To investigate candidate genes and/or chromosomal regions for associations with production traits. iii) To investigate approaches for optimizing future genotyping strategies within the sire referencing schemes for practical and cost effective application of marker-assisted selection By using commercial breeding populations for the research, immediate application of beneficial results is possible. Potential benefits include increased genetic progress through marker assisted selection which utilizes the genotype information, correction of possible parentage errors (ultimately leading to additional genetic progress) and opportunities for using marker information for product certification. The project will benefit the UK sheep industry by the use of Marker Assisted Selection (MAS) utilizing QTL or gene variants identified in the project. Additional benefits may arise from parentage verification and correction of errors e.g. misallocation of lamb to ewe. In the longer term, opportunities may exist to use markers for quality control, tracing products to their source. The major advantage of the design of this project is that the results are immediately applicable to the breeding schemes within which the QTLs and/or genes are detected. The time lag in the application of the results that is often seen with experimental populations is minimized. The project requires close involvement with the Sire Reference Schemes, in return for their assistance the results have immediate benefit to animals within these groups. | gene, animal, breed, breeding, chromosomal, chromosome, genome, genotype, genotyping, lamb, map, mapping, marker, population, production, region, sheep, specie, structure, trait | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-20995 | SCR_002272 | UKSGMP | 2026-08-10 09:31:40 | 1 | |||||||||
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System for Earth Sample Registration Resource Report Resource Website 10+ mentions |
System for Earth Sample Registration (RRID:SCR_002222) | SESAR | data or information resource, database, catalog | Sample Catalog and Registry for the International Geo Sample Number. SESAR catalogs and preserves sample metadata profiles, and provides access to the sample catalog via the Global Sample Search. | international geo sample number, metadata, sample, biology, gas, liquid, mineral, particulate, rock, sediment, soil, register |
is listed by: CINERGI has parent organization: EarthChem |
NSF | Free, Freely available | nlx_154747, r3d100010420 | https://doi.org/10.17616/R3H89M | SCR_002222 | 2026-08-10 09:31:39 | 14 | ||||||
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GRS Resource Report Resource Website 1+ mentions |
GRS (RRID:SCR_001008) | data analysis software, software application, data management software, software resource, data processing software | A compression tool for efficient storage of Genome Re-Sequencing data. GRS processes genome sequence data without use of reference SNPs and other variants. It can also automatically rebuild the individual genome sequence data using the reference genome sequence. | data analysis software, data management software, compression tool, data compression, storage, genome, resequencing | is listed by: OMICtools | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00960 | SCR_001008 | 2026-08-10 09:31:18 | 2 | |||||||||
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vuTools Resource Report Resource Website |
vuTools (RRID:SCR_001704) | vuTools | software application, data processing software, image processing software, software resource | VUIIS (Vanderbilt University Institute of Imaging Science) Image and Data Analysis Core's data processing tools written for MATLAB and, unless stated otherwise, capable of processing 2D/3D images (matrices). These tools are written for ease of use from within MATLAB. | magnetic resonance, matlab |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Vanderbilt University; Tennessee; USA |
Free, Freely Available | nlx_156025 | SCR_001704 | 2026-08-10 09:31:30 | 0 | ||||||||
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RegulonDB Resource Report Resource Website 100+ mentions |
RegulonDB (RRID:SCR_003499) | RegulonDB | data or information resource, database | Database on transcriptional regulation in Escherichia coli K-12 containing knowledge manually curated from original scientific publications, complemented with high throughput datasets and comprehensive computational predictions. Graphic and text-integrated environment with friendly navigation where regulatory information is always at hand. They provide integrated views to understand as well as organized knowledge in computable form. Users may submit data to make it publicly available. | transcription, gene regulation, operon, bacteria, evolutionary conservation, regulatory phrase, transcriptional regulation, transcriptional regulatory network, bio.tools, FASEB list |
is listed by: OMICtools is listed by: 3DVC is listed by: bio.tools is listed by: Debian has parent organization: National Autonomous University of Mexico; Mexico City; Mexico |
NIGMS GM071962; NIGMS GM077678; Consejo Nacional de Ciencia y Tecnologia 103686; Consejo Nacional de Ciencia y Tecnologia 179997; Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica IN210810; Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica IN209312 |
PMID:23203884 | nif-0000-03399, OMICS_01868, biotools:regulondb | https://bio.tools/regulondb | SCR_003499 | 2026-08-10 09:32:01 | 153 | ||||||
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Brain Canada Resource Report Resource Website 10+ mentions |
Brain Canada (RRID:SCR_005053) | Brain Canada | data or information resource, topical portal, portal, funding resource | Brain Canada is a national non-profit organization that develops and supports collaborative, multidisciplinary, multi-institutional research across the neurosciences. Through partnering with the public, private and voluntary sectors, Brain Canada connects the knowledge and resources available in this area to accelerate neuroscience research and funding and maximize the output of Canada''s world-class scientists and researchers. Brain Canada was created to address the twin challenges of increasing the scale of brain research funding in Canada and widening its scope to encourage interdisciplinary collaboration to produce insights for treating multiple disorders. Brain Canada is built on the successes and model of NeuroScience Canada (NSC). Established in 1999, NSC raised more than $11.5 million, leveraged over $20 million with partnered funding, and funded 100 individual and teams of researchers in Canada. Brain Canada is the new vision for Canadian brain researchthe voice for the brain and the grouping of brain disorders, raising awareness about their prevalence and impact on individuals, families, the economy and society. But most important, through the research we are funding, we are giving hope to the millions of Canadians who are directly or indirectly touched by diseases, disorders, and injuries of the brain, spinal cord and nervous system. | brain, neuroscience, research, brain disorder | is related to: Canadian Open Neuroscience Platform | nlx_144038 | SCR_005053 | Brain Canada Foundation | 2026-08-10 09:32:27 | 11 | ||||||||
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iBioSeminars Resource Report Resource Website |
iBioSeminars (RRID:SCR_005848) | iBioSeminars | data or information resource, training material, video resource, narrative resource | iBioSeminars offers: * Free, on-demand lectures: Many universities/colleges have limited access to high profile leaders in biological research. Our goal is to add 15-20 seminars per year, of similar quality to outstanding lectures that are currently in this library. Access, through web streaming or download, is completely free-of-charge. * Targeting a broad audience: iBioSeminars start with an extended introduction, making them accessible to non-specialists and students, and then progress to cover current research. Senior scientists and students can view and enjoy these lectures. * Education: iBioSeminars are being used by undergraduate and graduate teachers to augment their classroom material. We have now added an education component to this web site (including lecture notes, questions/answers and short video clips for teaching). * International communication: iBioSeminars have viewers in 115 countries and they are being internally promoted in several countries as an educational tool and scientific resource. * Goodwill: Lecturers generously donate their time to prepare these lectures. The project, largely funded by HHMI, is a grass roots efforts with time invested by several individuals at UCSF, HHMI and ASCB. | biological research, biology, lecture, seminar, education, undergraduate, graduate |
has parent organization: University of California at San Francisco; California; USA has parent organization: American Society for Cell Biology has parent organization: Howard Hughes Medical Institute |
NSF ; NIGMS ; Howard Hughes Medical Institute |
Licensed under a Creative Commons Attribution-NonCommercial-NoDerivs v3 Unported License. | nlx_149380 | SCR_005848 | iBioSeminars - Bringing the World''s Best Biology to You, iBioSeminars - Bringing the Worlds Best Biology to You, iBioSeminars.org | 2026-08-10 09:32:40 | 0 | ||||||
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KZNF Catalog Resource Report Resource Website |
KZNF Catalog (RRID:SCR_015495) | data or information resource, database, catalog | Searchable, manually curated collection of Kruppel-type zinc finger genes (KZNFs) in primates with finished or high quality draft genomes. | kruppel type zinc finger gene, kznf, kruppel type zinc finger model, primate finger, primate finger gene | has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA | Open source | SCR_015495 | 2026-08-10 09:35:31 | 0 | ||||||||||
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Functional Network Connectivity (FNC) Resource Report Resource Website 10+ mentions |
Functional Network Connectivity (FNC) (RRID:SCR_015731) | FNC | data analysis software, software application, software toolkit, software resource, data processing software | Software toolbox which finds and displays temporal relations amongst components. This can help determine causal relations in the brain. | fmri, temporal relation, causal relation, neural connectivity, | is used by: MATLAB | PMID:18082428 | Free, Available for download, Tutorial available | http://mialab.mrn.org/software/fnc/index.html | SCR_015731 | FNC Toolbox, GIFT toolbox, Functional Network Connectivity Toolbox | 2026-08-10 09:35:26 | 26 | ||||||
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LabeledIn Resource Report Resource Website 1+ mentions |
LabeledIn (RRID:SCR_015667) | data or information resource, database, software resource | Database of annotations of drug indications in FDA drug labels. LabeledIn contains an expert curated set of indications and a crowdsourced set of indications. | drug, annotation, fda, fda drug label | Intramural Research Program of the NIH – National Library of Medicine ; National Key Technology R&D Program of China 2013BAI06B01; Fundamental Research Funds for the Central Universities 13R0101; MITRE Internal Research and Development Program |
PMID:25220766 PMID:25797061 |
Public, Freely available, Free, Available for download | SCR_015667 | 2026-08-10 09:35:32 | 2 | |||||||||
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DISEASES Resource Report Resource Website 500+ mentions |
DISEASES (RRID:SCR_015664) | data or information resource, database | Database that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies. It also assigns confidence scores that facilitate comparison of the different types and sources of evidence. | disease, gene, disease-gene association, text-mining, , bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools |
Novo Nordisk Foundation Center for Protein Research NNF14CC0001; European Union Seventh Framework Programme n259348 |
PMID:25484339 | biotools:diseases | https://bio.tools/diseases | SCR_015664 | 2026-08-10 09:35:32 | 655 | |||||||
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TISSUES Resource Report Resource Website 10+ mentions |
TISSUES (RRID:SCR_015665) | data or information resource, web application, database, software resource | Database that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. It maps all evidence to common protein identifiers and Brenda Tissue Ontology terms, and further unifies it by assigning confidence scores that facilitate comparison of the different types and sources of evidence. | tissue expression, proteomic, transcriptomic, text-mining, brenda tissue ontology, protein identifier, bio.tools |
uses: BRENDA Tissue and Enzyme Source Ontology is listed by: Debian is listed by: bio.tools |
Novo Nordisk Foundation NNF14CC0001; NCI U54 CA189205-01; CSIRO’s OCE Science Leader program |
PMID:26157623 | Freely available, Free, Available for download | biotools:tissues | https://bio.tools/tissues | SCR_015665 | TISSUES: Tissue Expression Database, Tissue Expression Database | 2026-08-10 09:35:25 | 45 | |||||
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Evolutionary Rate Covariation Resource Report Resource Website 1+ mentions |
Evolutionary Rate Covariation (RRID:SCR_015669) | ERC | data analysis software, software application, web application, software resource, data processing software | Web-based statistical application that measures correlated rates across a phylogeny, allowing for extraction of genes with similar evolutionary histories. It can identify new functional connections between genes. | statistical software, correlation, phylogeny, gene extraction, genetic evolutionary history, covariation, group analysis | PMID:25679399 PMID:24453993 PMID:22287101 |
Freely available, Free, Available for download | SCR_015669 | ERC: Evolutionary Rate Covariation, Evolutionary Rate Covariation (ERC) Analysis, Evolutionary Rate Covariation (ERC) | 2026-08-10 09:35:25 | 2 | ||||||||
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Connectivity Map 02 Resource Report Resource Website 100+ mentions |
Connectivity Map 02 (RRID:SCR_015674) | cmap | data or information resource, web application, database, software resource | Collection of genome-wide transcriptional expression data from cultured human cells treated with bioactive small molecules and simple pattern-matching algorithms. camp aims to enable the discovery of functional connections between drugs, genes and diseases through the transitory feature of common gene-expression changes., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription, expression, gene, drug, disease pattern-matching algorithm, FASEB list |
has parent organization: Broad Institute has parent organization: Broad Institute of MIT and Harvard |
PMID:17008526 | THIS RESOURCE IS NO LONGER IN SERVICE | https://www.broadinstitute.org/cmap_build01 | SCR_015674 | Broad Institute Connectivity Map 02 Build, cmap | 2026-08-10 09:35:25 | 243 | ||||||
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NAPR: Neuroanatomical Age Prediction using R Resource Report Resource Website 1+ mentions |
NAPR: Neuroanatomical Age Prediction using R (RRID:SCR_015759) | NAPR | service resource, storage service resource, data repository | Cloud-based framework that allows users to estimate the age of individual subjects using cortical thickness maps derived from their own locally processed T1-weighted whole brain MRI scans. The provided age prediction models were trained using (i) relevance vector machines and (ii) Gaussian processes machine learning methods applied to cortical thickness surfaces obtained using Freesurfer v5.3. | neuroanatomy, prediction, r, neuroimaging, mri scan, cortical thickness, relevance vector | DOI:10.1101/099309 | Free, Available for download | http://www.cloudneuro.org/ | SCR_015759 | Neuroanatomical Age Prediction using R | 2026-08-10 09:35:27 | 1 | |||||||
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Decision Decoding Toolbox Resource Report Resource Website 1+ mentions |
Decision Decoding Toolbox (RRID:SCR_015978) | DDTBOX | data analysis software, software application, software toolkit, software resource, data processing software | Software toolkit for multivariate pattern analysis (MVPA) of event-related potentials. This software is written in MATLAB. | erp, event, related, potential, multivariate, analysis, pattern, matlab, mvpa | Free, Available for download | SCR_015978 | The Decision Decoding Toolbox (DDTBOX), DDTBOX: Decision Decoding Toolbox | 2026-08-10 09:35:35 | 3 | |||||||||
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Brain-CODE Resource Report Resource Website 10+ mentions |
Brain-CODE (RRID:SCR_015877) | service resource, storage service resource, data repository | Brain-CODE is a large-scale informatics platform that manages the acquisition and storage of multidimensional data collected from participants with a variety of brain disorders. | informatics, data storage, brain disorder | brain disorder, neurological disorder, informatics platform, data repository, data storage service, neuroscience | Public, Freely available, The research community can contribute to this resource | r3d100012181 | https://doi.org/10.17616/R3CK9G | SCR_015877 | 2026-08-10 09:35:28 | 49 | ||||||||
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PDB-Dev Resource Report Resource Website 10+ mentions |
PDB-Dev (RRID:SCR_016185) | service resource, storage service resource, data repository | Data repository for integrative/hybrid structural models of macromolecules and their assemblies. This includes atomistic models as well as multi-scale models consisting of different coarse-grained representations. | protein, prototype, deposition, integration, hybrid, model, macromolecule, assembly, crystallography, spectroscopy, microscopy, |
is related to: IHM-dictionary has parent organization: Worldwide Protein Data Bank (wwPDB) has parent organization: Rutgers University; New Jersey; USA |
NSF DBI-1519158 | Account required, Freely available, The research community can contribute to this resource | SCR_016185 | 2026-08-10 09:35:33 | 36 | |||||||||
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RELION Resource Report Resource Website 100+ mentions |
RELION (RRID:SCR_016274) | data analysis software, software application, standalone software, software resource, data processing software | Software for determination of cryo-EM structures. It employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy. | cryo, cryogenic, cryo em, determination, analysis, bayesian, statistic, map, maximum a posteriori, electron, cryomicroscopy |
is listed by: Debian is listed by: OMICtools |
UK Medical Research Council | PMID:23000701 | Free, Available for download, Tutorial available | OMICS_15597 | https://sources.debian.org/src/relion-bin+mpi+gui/ | SCR_016274 | RELION, REgularised LIkelihood OptimisatioN, RELION-3 | 2026-08-10 09:35:37 | 440 | |||||
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ANNOgesic Resource Report Resource Website 10+ mentions |
ANNOgesic (RRID:SCR_016326) | data analysis software, software application, software toolkit, standalone software, software resource, data processing software | Software tool for bacterial/archaeal RNA-Seq based genome annotations. Used for integrating, detecting, predicting, and grouping RNA-Seq data. | bacterial, archaeal, RNA, sequencing, data, analysis, genome, annotation, statistic, visualization, protein, interaction, prediction, grouping, go, ontology, gene, differential, circular |
is related to: Infernal is related to: Vienna RNA is related to: Biopython is related to: MEME Suite - Motif-based sequence analysis tools is related to: Segemehl |
Free, Freely available, Available for download | SCR_016326 | 2026-08-10 09:35:36 | 10 |
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