Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Dementia Brain Bank Research Program Resource Report Resource Website |
Dementia Brain Bank Research Program (RRID:SCR_005129) | biomaterial supply resource, material resource, tissue bank | A brain bank which has obtained brains from individuals who suffered from some form of dementia. Clinical records and a family history are obtained for each donor in order to better understand each dementing illness and to work towards the improvement of diagnosing, treating, and preventing these diseases. | dementia, clinical data, family history, alzheimer's disease, brain, tissue |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Regions Hospital Alzheimer's Research Center |
Dementia, Alzheimer's disease | nlx_144137 | SCR_005129 | Brain Bank Research Program | 2026-09-19 12:56:49 | 0 | ||||||||
|
Stanley Medical Research Institute Online Genomics Database Resource Report Resource Website 10+ mentions |
Stanley Medical Research Institute Online Genomics Database (RRID:SCR_004859) | Stanley Online Genomics Database | data or information resource, database | The Stanley Online Genomics Database uses samples from the Stanley Medical Research Institute (SMRI) Brain Bank. These samples were processed and run on gene expression arrays by a variety of researchers in collaboration with the SMRI. These researchers have performed analyses on their respective studies using a range of analytic approaches. All of the genomic data have been aggregated in this online database, and a consistent set of analyses have been applied to each study. Additionally, a comprehensive set of cross-study analyses have been performed. A thorough collection of gene expression summaries are provided, inclusive of patient demographics, disease subclasses, regulated biological pathways, and functional classifications. Raw data is also available to download. The database is derived from two sets of brain samples, the Stanley Array collection and the Stanley Consortium collection. The Stanley Array collection contains 105 patients, and the Stanley Consortium collection contains 60 patients. Multiple genomic studies have been conducted using these brain samples. From these studies, twelve were selected for inclusion in the database on the basis of number of patients studied, genomic platform used, and data quality. The Consortium collection studies have fewer patients but more diversity in brain regions and array platforms, while the Array collection studies are more homogenous. There are tradeoffs, the Consortium results will be more variable, but findings may be more broadly representative. The collections contain brain samples from subjects in four main groups: Bipolar Schizophrenia, Depression, and Controls Brain regions used in the studies include: Broadman Area 6, Broadman Area 8/9, Broadman Area 10, Broadman Area 46, Cerebellum The 12 studies encompass a range of microarray platforms: Affymetrix HG-U95Av2, Affymetrix HG-U133A, Affymetrix HG-U133 2.0+, Codelink Human 20K, Agilent Human I, Custom cDNA Publications based on any of the clinical or genomic data should credit the Stanley Medical Research Institute, as well as any individual SMRI collaborators whose data is being used. Publications which make use of analytic results/methods in the database should additionally cite Dr. Michael Elashoff. Registration is required to access the data. | clinical, genomic, gene expression, microarray, bipolar disorder, schizophrenia, depressive disorder, control, brain, brodmann area 6, brodmann area 8, brodmann area 9, brodmann (1909) area 10, brodmann area 46, cerebellum, FASEB list | has parent organization: Stanley Medical Research Institute | PMID:16594998 | nlx_143935 | SCR_004859 | SMRI Online Genomics Database | 2026-09-19 12:56:47 | 33 | |||||||
|
Deric Bownds Mindblog Resource Report Resource Website |
Deric Bownds Mindblog (RRID:SCR_005492) | Mindblog, Mind Blog | blog, data or information resource, narrative resource | Deric Bownds'' Mindblog reports new ideas and work on mind, brain, and behavior - as well as random curious stuff. Deric Bownds, retired Univ. Wisc. Professor, studies brain and mind. My laboratory research of ~35 years contributed to our understanding of how vision works. This work was gradually phased out in the 1990''s as I devoted increasing time to studying the evolution, development, and function of humans brains. | mind, brain, behavior | nlx_144602 | SCR_005492 | Deric''s Mind Blog, Derics Mind Blog, Deric Bownds'' Mindblog | 2026-09-19 12:56:51 | 0 | |||||||||
|
Wiring the Brain Resource Report Resource Website |
Wiring the Brain (RRID:SCR_005528) | Wiring the Brain | blog, data or information resource, narrative resource | This blog highlights and comments on current research and hypotheses relating to how the brain wires itself up during development, how the end result can vary in different people and what happens when it goes wrong. It includes discussions of the genetic and neurodevelopmental bases of traits such as intelligence and personality characteristics, as well as of conditions such as schizophrenia, autism, dyslexia, epilepsy, synaesthesia and others. | research, brain, development, genetic, wiring, neurodevelopment, trait, intelligence, personality, schizophrenia, autism, dyslexia, epilepsy, synaesthesia | Schizophrenia, Autism, Dyslexia, Epilepsy, Synaesthesia, Etc. | nlx_144622 | SCR_005528 | 2026-09-19 12:56:51 | 0 | |||||||||
|
practiCal fMRI: the nuts and bolts Resource Report Resource Website |
practiCal fMRI: the nuts and bolts (RRID:SCR_005429) | blog, data or information resource, narrative resource | A blog about functional MRI from a lab at UC Berkeley. | fmri, neuroimaging, brain, blog | nlx_144524 | SCR_005429 | practiCal fMRI: the nuts & bolts | 2026-09-19 12:56:51 | 0 | ||||||||||
|
BrainImmune Resource Report Resource Website |
BrainImmune (RRID:SCR_005418) | BrainImmune | blog, data or information resource, narrative resource | BrainImmune is a free web-based reference that provides comprehensive and up-to-date information on the broad spectrum of medical research related to brain-immune interactions and their impact on health and disease. BrainImmune is written collaboratively by experts in the field from all around the world. Here, concise summaries of basic and clinical research describe how the brain and the immune system ''talk'' to each other in order to maintain homeostasis. BrainImmune is continually updated, with articles and opinions on history, the present state of the art, and new ideas and conceptual frameworks for the neurohormonal- and stress-immune interactions and their implications for common human diseases. Our goal in developing BrainImmune is to facilitate and advance neuroendocrine-immunology research, and the communication and collaborations in this vast interdisciplinary area. | brain, immune system, history, regulatory pathway, stress, basic research, clinical research, history, article, opinion, human, disease, neuroendocrine, immunology, research, cytokine, image | nlx_144514 | SCR_005418 | BrainImmune - Reference Source for Bridging Neurosciences and Immunology, Brain Immune | 2026-09-19 12:56:51 | 0 | |||||||||
|
BCIZaragoza - YouTube Resource Report Resource Website |
BCIZaragoza - YouTube (RRID:SCR_005445) | BCIZaragoza - YouTube | data or information resource, video resource | Videos uploaded to YouTube by the Brain-Computer Interfaces (BCI) research team, University of Zaragoza. | brain, robot, teleoperation | has parent organization: University of Zaragoza; Zaragoza; Spain | nlx_144536 | SCR_005445 | Interfaz Cerebro Maquina Zaragoza, Brain-Computer Interfaces University of Zaragoza - YouTube, Canal de BCIZaragoza, Interfaz Cerebro M��quina Zaragoza, BCI Zaragoza - YouTube | 2026-09-19 12:56:51 | 0 | ||||||||
|
Stroke Patient Recovery Research Database (SPReD) Resource Report Resource Website |
Stroke Patient Recovery Research Database (SPReD) (RRID:SCR_005508) | SPReD | data or information resource, database, image | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 28,2025. The Stroke Patient Recovery Research Database (SPReD) initiative creates the infrastructure needed for the collection of a wide range of data related to stroke risk factors and to stroke recovery. It also promotes the analysis and management of large brain and vessel images. A major goal is to create a comprehensive electronic database Stroke Patient Recovery Research Database or SPReD and populate it with patient data, including demographic, biomarker, genetic and proteomic data and imaging data. SPReD will enable us to combine descriptions of our stroke patients from multiple projects that are geographically distributed. We will do this in a uniform fashion in order to enhance our ability to document rates of recovery; to study the effects of vascular risk factors and inflammatory biomarkers; and to use these data to improve their physical and cognitive recovery through innovative intervention programs. This comprehensive database will provide an integrated repository of data with which our researchers will investigate and test original ideas, ultimately leading to knowledge that can be applied clinically to benefit stroke survivors. | stroke, demographic, biomarker, genetic, proteomic, imaging, clinical, brain, vessel, risk factor, recovery | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144609 | SCR_005508 | Stroke Patient Recovery Research Database | 2026-09-19 12:56:51 | 0 | ||||||||
|
BrainBlogger - YouTube Resource Report Resource Website |
BrainBlogger - YouTube (RRID:SCR_005469) | BrainBlogger - YouTube | data or information resource, video resource | BrainBlogger - YouTube are videos uploaded to YouTube by Brain Blogger. Brain Blogger covers topics from multidimensional biopsychosocial perspectives. It reviews the latest news and stories related to neuroscience, psychiatry, and neurology. It serves as a focal point for attracting new minds beyond the science of the mind-and-brain and into the biopsychosocial model. | brain, human, neuroscience, psychiatry, neurology, biopsychosocial | has parent organization: Brain Blogger | Global Neuroscience Initiative Foundation | nlx_144586 | SCR_005469 | Brain Blogger - YouTube | 2026-09-19 12:56:51 | 0 | |||||||
|
BrainBlog Resource Report Resource Website 1+ mentions |
BrainBlog (RRID:SCR_005581) | BrainBlog | blog, data or information resource, narrative resource | BrainBlog is news about our knowledge of the brain and behavior from Anthony Risser, Ph.D. Anthony Risser, Ph.D. is a consulting neuropsychologist. My interests include online and distributed applications in medicine, clinical trials, professional training, and undergraduate/graduate education. | brain, behavior, neuropsychology, neuroscience, neurology, neuropsychologist | nlx_146204 | SCR_005581 | 2026-09-19 12:56:52 | 1 | ||||||||||
|
MethylomeDB Resource Report Resource Website 1+ mentions |
MethylomeDB (RRID:SCR_005583) | MethylomeDB | data or information resource, database | A database containing genome-wide brain DNA methylation profiles for human and mouse brains. The DNA methylation profiles were generated by Methylation Mapping Analysis by Paired-end Sequencing (Methyl-MAPS) method and analyzed by Methyl-Analyzer software package. The methylation profiles cover over 80% CpG dinucleotides in human and mouse brains in single-CpG resolution. The integrated genome browser (modified from UCSC Genome Browser allows users to browse DNA methylation profiles in specific genomic loci, to search specific methylation patterns, and to compare methylation patterns between individual samples. Two species were included in the Brain Methylome Database: human and mouse. Human postmortem brain samples were obtained from three distinct cortical regions, i.e., dorsal lateral prefrontal cortex (dlPFC), ventral prefrontal cortex (vPFC), and auditory cortex (AC). Human samples were selected from our postmortem brain collection with extensive neuropathological and psychopathological data, as well as brain toxicology reports. The Department of Psychiatry of Columbia University and the New York State Psychiatric Institute have assembled this brain collection, where a validated psychological autopsy method is used to generate Axis I and II DSM IV diagnoses and data are obtained on developmental history, history of psychiatric illness and treatment, and family history for each subject. The mouse sample (strain 129S6/SvEv) DNA was collected from the entire left cerebral hemisphere. The three human brain regions were selected because they have been implicated in the neuropathology of depression and schizophrenia. Within each cortical region, both disease and non-psychiatric samples have been profiled (matching subjects by age and sex in each group). Such careful matching of subjects allows one to perform a wide range of queries with the ability to characterize methylation features in non-psychiatric controls, as well as detect differentially methylated domains or features between disease and non-psychiatric samples. A total of 14 non-psychiatric, 9 schizophrenic, and 6 depression methylation profiles are included in the database. | brain, dna methylation, dorsal lateral prefrontal cortex, ventral prefrontal cortex, auditory cortex, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Columbia University; New York; USA |
NIH ; NHGRI HG002915; NIMH MH074118 |
PMID:22140101 | OMICS_01843, biotools:methylomedb, nlx_146210 | https://bio.tools/methylomedb | SCR_005583 | MethylomeDB - the Brain Methylome Database, Brain Methylome Database | 2026-09-19 12:56:52 | 1 | |||||
|
Major depressive disorder neuroimaging database Resource Report Resource Website 1+ mentions |
Major depressive disorder neuroimaging database (RRID:SCR_005835) | MaND | data or information resource, database | The Major Depressive Disorder Neuroimaging Database (MaND) contains information of 225 studies which have investigated brain structure (using MRI and CT scans) in patients with major depressive disorder compared to a control group. 143 studies and 63 brain structures are included in the meta-analysis. The database and meta-analysis are contained in an Excel spreadsheet file which may be freely downloaded from this website. | mri, brain, ct, neuroimaging, image, normal control | has parent organization: King's College London; London; United Kingdom | Major depressive disorder | Wellcome Trust ; National Institute for Health Research ; EPSRC |
PMID:21727252 | nlx_149353 | SCR_005835 | Major Depressive Disorder Neuroimaging Database (MaND) | 2026-09-19 12:56:54 | 2 | |||||
|
Neurophilosophy Resource Report Resource Website |
Neurophilosophy (RRID:SCR_006514) | Neurophilosophy | blog, data or information resource, narrative resource | Blog about molecules, minds and everything in between, written by Mo, a molecular and developmental neurobiologist turned science writer. He aims to produce well-written and easily accessible articles about all aspects of neuroscience, so that he might help to improve public understanding of it. This blog has been featured for two consecutive years in the Open Lab annual anthologies of the best science blogging. AFTER four years at ScienceBlogs.com, Neurophilosophy has moved to a new home. It is now hosted by The Guardian. | neuroscience, philosophy, molecule, mind, neuroscience, brain |
is used by: NIF Data Federation is used by: Integrated Blogs has parent organization: ScienceBlogs |
Protected by copyright laws and other intellectual property laws, For your own, Personal use, And, Non-commercial, Use only, Provided you abide by additional requirements, E.g., Attribution, Etc. | nlx_61948 | http://scienceblogs.com/neurophilosophy/ | SCR_006514 | 2026-09-19 12:56:58 | 0 | |||||||
|
Rambo3D Resource Report Resource Website |
Rambo3D (RRID:SCR_006357) | Rambo3D | d visualization software, software resource, source code | A web and GPU enabled stand-alone app for viewing volumes at arbitrary cutting planes and zoom levels. | annotation, volume, brain | has parent organization: Open Connectome Project | nlx_152092 | http://openconnectome.github.com/Rambo3D/ | SCR_006357 | Volume Viewer, VolumeViewer, Remote Annotation and Multichannel Boundary Observer in 3D | 2026-09-19 12:56:57 | 0 | |||||||
|
Public Expression Profiling Resource Resource Report Resource Website 10+ mentions |
Public Expression Profiling Resource (RRID:SCR_007274) | PEPR | data or information resource, database | An experiment in web-database access to large multi-dimensional data sets using a standardized experimental platform to determine if the larger scientific community can be given simple, intuitive, and user-friendly web-based access to large microarray data sets. All data in PEPR is also available via NCBI GEO. The structure and goals of PEPR differ from other mRNA expression profiling databases in a number of important ways. * The experimental platform in PEPR is standardized, and is an Affymetrix - only database. All microarrays available in the PEPR web database should ascribe to quality control and standard operating procedures. A recent publication has described the QC/SOP criteria utilized in PEPR profiles ( The Tumor Analysis Best Practices Working Group 2004 ). * PEPR permits gene-based queries of large Affymetrix array data sets without any specialized software. For example, a number of large time series projects are available within PEPR, containing 40-60 microarrays, yet these can be simply queried via a dynamic web interface with no prior knowledge of microarray data analysis. * Projects in PEPR originate from scientists world-wide, but all data has been generated by the Research Center for Genetic Medicine, Children''''s National Medical Center, Washington DC. Future developments of PEPR will allow remote entry of Affymetrix data ascribing to the same QC/SOP protocols. They have previously described an initial implementation of PEPR, and a dynamic web-queried time series graphical interface ( Chen et al. 2004 ). A publication showing the utility of PEPR for pharmacodynamic data has recently been published ( Almon et al. 2003 ). | microarray, expression profiling, affymetrix, metadata standard, gene, time series, data sharing, visualization, data mining, platform, blood, cell, cancer, bone, brain, eye, gut, heart, kidney, liver, lung, muscle, spinal cord, spleen, analysis |
is listed by: OMICtools is related to: Gene Expression Omnibus |
NINDS ; United States Department of Defense ; NHGRI ; NHLBI |
PMID:14681485 PMID:14596642 |
Public, Account required, (to download, For the analysis and visualization tools), The community can contribute to this resource | nif-0000-00014, OMICS_00776 | SCR_007274 | 2026-09-19 12:57:03 | 16 | ||||||
|
BAMS Nested Regions Resource Report Resource Website 1+ mentions |
BAMS Nested Regions (RRID:SCR_000238) | BAMS Nested Regions | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 7th, 2019. BAMS is an online resource for information about neural circuitry. The BAMS Nested Regions view focuses on the major brain regions and their relationships. | neural circuitry, brain region, brain |
is used by: NIF Data Federation has parent organization: Brain Architecture Management System |
NIMH MH61223; NINDS NS16686; NINDS/NIMH/NIBIB NS50792-01 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10175 | SCR_000238 | Brain Architecture Management System Nested Regions | 2026-09-19 12:56:25 | 3 | ||||||
|
Sullivan Lab Evidence Project Resource Report Resource Website 1+ mentions |
Sullivan Lab Evidence Project (RRID:SCR_000753) | SLEP | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Database of genetic and gene expression data from the published literature on psychiatric disorders. Users can search the accumulated data to find the evidence in support of the involvement of a particular genomic region with a set of important psychiatric disorders, ADHD, autism, bipolar disorder, eating disorder, major depressive disorder, schizophrenia, and smoking behavior. It contains findings from manual reviews of 144 papers in psychiatric genetics, 136 primary reports and 8 meta-analyses. Disorders covered include schizophrenia (44 papers), autism (24 papers), bipolar disorder (24 papers), smoking behavior (24 papers), major depressive disorder and neuroticism (14 papers), ADHD (8 papers), eating disorders (3 papers), and a combined schizophrenia-bipolar phenotype (3 papers). The unbiased searches integrated into SLEP include genomewide linkage (117 papers), genomewide association (15 papers), copy number variation (9 papers), and gene expression studies of post-mortem brain tissue (3 meta-analyses courtesy of the Stanley Foundation). In total, SLEP captures 3,741 findings from these 144 papers. SLEP also contains over 70,000 SignPosts. These annotations derive from many different sources and are designed to try to capture current state of knowledge about disease associations in the human genome. SignPosts can be searched simultaneously with the psychiatric genetics literature in order to integrate these two bodies of knowledge. The SignPosts include: accumulated GWAS findings from the human genetics literature, the OMIM database, candidate gene association study literature, CNV location and frequency data, SNPs that influence gene expression in brain, genes expressed in brain, genes with evidence of imprinting and random monoalleleic expression, genes mutated in breast or colorectal cancer, and pathway data from BioCyc. | eating disorder, gene, gene expression, adhd, autism, bipolar disorder, brain, breast, cancer, colorectal, combined schizophrenia-bipolar, disease, genomic region, imprinting, major depressive disorder, meta-analysis, monoalleleic, mutation, neuroticism, post-mortem, psychiatric disorder, schizophrenia, smoking behavior, tissue, molecular neuroanatomy resource | Eating disorder, Bipolar disorder, Brain, Breast cancer, Colorectal cancer, Combined schizophrenia-bipolar disease, Genomic region, Imprinting, Major depressive disorder, schizophrenia, Smoking behavior, Autism, Attention deficit-hyperactivity disorder | NIMH MH097281 | PMID:18548508 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10439 | SCR_000753 | 2026-09-19 12:56:28 | 3 | ||||||
|
Brain Evolution in the News Resource Report Resource Website |
Brain Evolution in the News (RRID:SCR_000592) | Brain Evolution in the News | blog, data or information resource, narrative resource | Brain Evolution in the News pulls in blogs from a variety of resources on topic. | brain, development, evolution | nlx_144625 | SCR_000592 | 2026-09-19 12:56:27 | 0 | ||||||||||
|
Eide Neurolearning Blog Resource Report Resource Website |
Eide Neurolearning Blog (RRID:SCR_000680) | Eide Neurolearning Blog | blog, data or information resource, narrative resource | Weekly articles related to brain-based learning and learning styles, problem-solving and creativity, kids, families, and parenting, gifted and visual learners, dyslexia, attention deficit disorders, autism, and more. | learning, brain, learning style, problem-solving, creativity, child, family, parenting, gifted learner, visual learner, dyslexia, attention deficit disorder, autism, human, working memory | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144589 | SCR_000680 | 2026-09-19 12:56:27 | 0 | |||||||||
|
Kymata Atlas Resource Report Resource Website 1+ mentions |
Kymata Atlas (RRID:SCR_000269) | atlas, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An online atlas of neural function, maintained by Cambridge University and the MRC Cognition and Brain Sciences Unit (CBSU). | data visualization software, database, adult human, brain, function, computational model, sensory information, post-synaptic dendritic current |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Cambridge; Cambridge; United Kingdom has parent organization: MRC Cognition and Brain Sciences Unit |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_158115 | http://www.nitrc.org/projects/kymata_atlas | SCR_000269 | 2026-09-19 12:56:25 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
