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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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openMINDS stimulation metadata model Resource Report Resource Website |
openMINDS stimulation metadata model (RRID:SCR_026253) | openMINDS_stimulation, openMINDS stimulation | data or information resource, narrative resource, standard specification | Software repository is part of the open Metadata Initiative for Neuroscience Data Structures (openMINDS). It extends openMINDS, by providing metadata schemas for in-depth descriptions of stimuli and stimulation protocols in neuroscience. | metadata schema, graph metadata model, descriptions of stimuli and stimulation, protocols, neuroscience |
is related to: openMINDS metadata framework is related to: EBRAINS |
European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA1 720270; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA2 785907; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA3 945539; European Union’s Research and Innovation Program Horizon Europe - EBRAINS 2.0 101147319; Helmholtz International BigBrain Analytics and Learning Laboratory (HIBALL) |
Free, Available for download, Freely available | https://openminds-documentation.readthedocs.io/en/latest/schema_specifications/stimulation.html | SCR_026253 | SciCrunch Registry | 2026-11-07 12:06:28 | 0 | |||||||
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4TU.Datacentrum Resource Report Resource Website 1+ mentions |
4TU.Datacentrum (RRID:SCR_006295) | 4TU.DC, 4TU | data or information resource, data repository, database, service resource, storage service resource | Multidisciplinary data repository for a consortium of universities in the Netherlands housing over datasets with a focus on scientific and technical data. Most data were produced by Dutch researchers including datasets from doctoral research. Users can deposit up to 1G by completing an upload form. Collection development foci include applied sciences, biomedical technology, earth sciences, and technology and construction. 4TU.Datacentrum is a collaboration of the libraries of the three leading technical universities - Delft University of Technology, Eindhoven University of Technology and the University of Twente. | data sharing, digital archive, data management, digital sustainability, data set, radar meteorology, data archive, cryoelectronics, watershed hydrology, hydrology, climatology, physics, traffic flow, land use, climate |
is listed by: re3data.org is listed by: DataCite has parent organization: Delft University of Technology; Delft; Netherlands has parent organization: Eindhoven University of Technology; North Brabant; Netherlands has parent organization: University of Twente; Overijssel; Netherlands |
nlx_151952, r3d100010216 | https://doi.org/10.17616/R3VG6N | SCR_006295 | SciCrunch Registry | 3TU.Datacentrum, 3TU, 3TU.DC | 2026-11-07 11:55:49 | 1 | |||||||
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Arvados Resource Report Resource Website 1+ mentions |
Arvados (RRID:SCR_002223) | arvados | data repository, service resource, storage service resource | Bioinformatics platform for storing, organizing, processing, and sharing genomic and other biomedical big data. Designed to make it easier for bioinformaticians to develop analyses, developers to create genomic web applications and IT administers to manage large-scale compute and storage genomic resources. Designed to run on top of cloud operating systems such as Amazon Web Services and OpenStack. Currently, there are implementations that work on AWS and Xen+Debian/Ubuntu. Functionally, Arvados has two major sets of capabilities: (a) data management and (b) compute management. | mapreduce/hadoop, genomic, biomedical, data sharing, compute, data management, cloud | is listed by: Debian | Free, Freely available | OMICS_01835 | https://sources.debian.org/src/arvados/ | SCR_002223 | SciCrunch Registry | 2026-11-07 11:54:54 | 3 | |||||||
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Kidney Tissue Atlas Resource Report Resource Website 10+ mentions |
Kidney Tissue Atlas (RRID:SCR_021626) | atlas, data or information resource | Atlas is set of interactive tools built to promote retrieval, exploration, discovery, and analysis of Kidney Precision Medicine Project data by greater research community. Datasets available in repository are combination of raw and processed data from KPMP participant biopsies and reference tissue samples. | Interactive tools, retrieval, exploration, discovery, analysis, Kidney Precision Medicine Project data | is related to: Kidney Precision Medicine Project | Free, Freely available | SCR_021626 | SciCrunch Registry | 2026-11-07 12:03:19 | 38 | ||||||||||
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Arch Resource Report Resource Website 1+ mentions |
Arch (RRID:SCR_023130) | data repository, service resource, storage service resource | Arch is an open access repository for the research and scholarly output of Northwestern University. Log in with your NetID to deposit, describe, and organize your research for public access and long-term preservation. We'll use our expertise to help you curate, share, and preserve your work. | Northwestern University research and scholarly output, Northwestern University data |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Free, Freely available | DOI:10.17616/R31NJMGT, DOI:10.25504/FAIRsharing.52b22c, r3d100012925, DOI:10.21985 | https://doi.org/10.21985, https://dx.doi.org/10.21985, http://doi.org/10.17616/R31NJMGT, https://fairsharing.org/10.25504/FAIRsharing.52b22c, https://doi.org/10.17616/R31NJMGT | SCR_023130 | SciCrunch Registry | Arch | 2026-11-07 12:00:41 | 2 | |||||||
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datasets.datalad.org Resource Report Resource Website 1+ mentions |
datasets.datalad.org (RRID:SCR_019089) | data or information resource, data repository, data set, service resource, storage service resource | DataLad data distribution. Super dataset collating DataLad datasets from various sources including OpenNeuro, CRCNS, etc., to provide unified access to over 200TB of neural data. | Version control system, data distribution, super dataset, DataLad dataset, neural data | is related to: DataLad | NIBIB P41 EB019936; NSF 1429999; NSF 1912266 |
Free, Freely available | https://www.datalad.org/datasets.html | SCR_019089 | SciCrunch Registry | 2026-11-07 11:59:19 | 8 | ||||||||
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TRACK TBI Network Resource Report Resource Website |
TRACK TBI Network (RRID:SCR_004723) | TRACK TBI Network | data or information resource, knowledge environment, narrative resource, standard specification | Network evaluating consensus-based common data elements (CDE) for traumatic brain injury (TBI) and psychological health (TBI-CDE, www.commondataelements.ninds.nih.gov/TBI.aspx) while extensively phenotyping a cohort of TBI patients across the injury spectrum from concussion to coma. Institutions that participate in the TBI Network will be able to track the outcomes of patients through a 3, 6 and 12-month followup program and compare outcomes with other participating institutions. For the three acute care centers, patients were enrolled that presented to the emergency department within 24 hours of head injury and required computed tomography (CT). For the rehabilitation center, referrals from acute hospitals were enrolled. Patients were consented to participate in components: clinical profile; blood draws for measurement of proteomic and genomic markers; 3T MRI within 2 weeks; three-month Glasgow Outcome Scale-Extended (GOS-E); and six-month TBI-CDE Core outcome assessments. A web-enabled database, imaging repository, and biospecimen bank was developed using the TBI-CDE recommendations. A total of 605 patients were enrolled. Of these subjects, 88% had a GCS 13-15, 5% had a GCS 9-12, and 7% had a GCS of 8 or less. Three-month GOS-E''s were obtained for 78% of the patients. Comprehensive 6-month outcome measures, including PTSD assessment, are ongoing until September 2011. Blood specimens were collected from 450 patients. Initial CTs for 605 patients and 235 patients with 3T MRI studies were transferred to an imaging repository. The TRACK TBI Network will provide qualified institutions access to a web-based version of key forms in tracking TBI outcomes for Quality Improvement and institutional benchmarking. | traumatic brain injury, concussion, coma, psychological health, common data element, head injury, mri, computed tomography, post-traumatic stress disorder, clinical, neuroimage, genomic, proteomic, outcome data, clinical data, marker, blood, glasgow outcome scale-extended, one mind tbi, one mind ptsd, image, image collection, benchmark, biomaterial supply resource, database, outcome | is listed by: One Mind Biospecimen Bank Listing | Traumatic brain injury | NINDS ; NIDRR ; Defense and Veterans Brain Injury Center ; Defense Centers of Excellence for Psychological Health and Traumatic Brain Injury |
Access to a web-based version of key forms is available to qualified institutions. | nlx_143882 | http://www.tracktbi.net/tracktbi/ | SCR_004723 | SciCrunch Registry | Traumatic Brain Injury Network, Transforming Research and Clinical Knowledge in Traumatic Brain Injury Network, TBI Network, Transforming Research and Clinical Knowledge in Traumatic Brain Injury: Multicenter Implementation of the TBI Common Data Elements | 2026-11-07 11:55:49 | 0 | ||||
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Field of Genes Resource Report Resource Website 1+ mentions |
Field of Genes (RRID:SCR_016155) | data processing software, software application, software resource | Software repository holding a cloud-ready demonstration of the use of Kafka as a genomic database. | kafka, akka, scalability | DOI:10.5524/100430 | SCR_016155 | SciCrunch Registry | Field of Genes Proof of Concept | 2026-11-07 12:01:31 | 1 | ||||||||||
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F1000 Posters Resource Report Resource Website 1+ mentions |
F1000 Posters (RRID:SCR_006503) | F1000 Posters, F1000Posters | data or information resource, narrative resource, service resource, storage service resource | An open access repository of conference posters from across the life sciences and medicine. It provides a permanent, structured environment for the deposition of posters as well as a trustworthy venue for ongoing discussion and development of the information being presented. You can browse posters by Topic or Section or by conference. Please note that most posters on this site present work that is preliminary in nature and has not been peer reviewed. The most interesting posters are selected for evaluation by our expert Faculty and you will receive ideas and feedback. Widen your audience ����?? top performing posters receive 800+ views in a month! | poster, slide |
is used by: NIF Data Federation has parent organization: F1000: Faculty of 1000 Post-Publication Peer Review |
Creative Commons Attribution-NonCommercial License | nlx_20701 | http://posters.f1000.com/, http://posters.f1000.com/posters | SCR_006503 | SciCrunch Registry | Faculty of 1000 Posters, F1000 Posters: The Open Poster Repository for Biology and Medicine | 2026-11-07 12:00:33 | 1 | ||||||
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ProGlycProt Resource Report Resource Website 1+ mentions |
ProGlycProt (RRID:SCR_000622) | ProGlycProt | data or information resource, database | Manually curated, comprehensive repository of experimentally characterized bacterial glycoproteins and archaeal glycoproteins, generated from an exhaustive literature search. This is the focused effort to provide concise relevant information derived from rapidly expanding literature on prokaryotic glycoproteins, their glycosylating enzyme(s), glycosylation linked genes, and genomic context thereof, in a cross-referenced manner. The database is arranged into two sections namely, ProCGP and ProUGP. ProCGP is the main section containing characterized prokaryotic glycoproteins, defined as entries with at least one experimentally known glycosylated residue (glycosite). Whereas, ProUGP is the supplementary section, presenting uncharacterized prokaryotic glycoproteins, defined as entries with experimentally identified glycosylation but unidentified glycosites. The ProGlycProt has been developed with to aid and advance the emerging scientific interests in understanding the mechanisms, implications, and novelties of protein glycosylation in prokaryotes that include many pathogenic as well as economically important bacterial species. The website supports a dedicated structure gallery of homology models and crystal structures of characterized glycoproteins in addition to two new tools developed in view of emerging information about prokaryotic sequons (conserved sequences of amino acids around glycosites) that are never or rarely seen in eukaryotic glycoproteins. ProGlycProt provides an extensive compilation of experimentally identified glycosites (334) and glycoproteins (340) of prokaryotes that could serve as an information resource for research and technology applications in glycobiology. A general data update policy is once in three months. Existing entries are updated in real-time. | glycoprotein, glycosite, glycosylation, coding gene, protein, glycosylation type, attached glycan, oligosaccharyl transferase, glycosyl transferase, glycobiology, glycosylating enzyme, glycosylation linked gene, crystal structure, homology, homology model, blast, predict, bacteria, archaea, image collection, structure, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Institute of Microbial Technology; Chandigarh; India |
Institute of Microbial Technology; Chandigarh; India OLP0063; Council of Scientific and Industrial Research; New Delhi; India SIP10AA |
PMID:22039152 | nlx_151583, biotools:proglycprot | https://bio.tools/proglycprot | SCR_000622 | SciCrunch Registry | Prokaryotic Glycoproteins, ProGlycProt - A Repository of Experimentally Characterized GlycoProteins of Prokaryotes | 2026-11-07 12:02:03 | 1 | |||||
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openMINDS specimenPrep metadata model Resource Report Resource Website |
openMINDS specimenPrep metadata model (RRID:SCR_026252) | openMINDS_specimenPrep, openMINDS specimenPrep | data or information resource, narrative resource, software resource, source code, standard specification | Software repository is part of the open Metadata Initiative for Neuroscience Data Structures (openMINDS). It extends openMINDS, by providing metadata schemas for in-depth descriptions of specimen preparations (surgery, tissue slicing, etc.). | metadata schema, graph metadata model, descriptions of specimen preparations, surgery, tissue slicing, |
is related to: openMINDS metadata framework is related to: EBRAINS |
European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA1 720270; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA2 785907; European Union’s Horizon 2020 Framework Programme for Research and Innovation - Human Brain Project SGA3 945539; European Union’s Research and Innovation Program Horizon Europe - EBRAINS 2.0 101147319; Helmholtz International BigBrain Analytics and Learning Laboratory (HIBALL) |
Free, Available for download, Freely available | https://openminds-documentation.readthedocs.io/en/latest/schema_specifications/specimenPrep.html | SCR_026252 | SciCrunch Registry | 2026-11-07 12:06:30 | 0 | |||||||
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PEtab Resource Report Resource Website |
PEtab (RRID:SCR_026915) | software resource, source code | Repository contains PEtab specifications and additional documentation. Data format for specifying parameter estimation problems in systems biology. SBML and TSV based data format for parameter estimation problems in systems biology. Human- and computer- readable format for representing parameter estimation problems in systems biology. | SBML, TSV, data format, parameter estimation problems, systems biology, specifying parameter estimation problems, | European Unions Horizon 2020 ; NCI U54 CA225088 |
PMID:33497393 | Free, Available for download, Freely available | https://github.com/PEtab-dev/PEtab, https://zenodo.org/records/3732958 | SCR_026915 | SciCrunch Registry | 2026-11-07 12:06:57 | 0 | ||||||||
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iReceptor Resource Report Resource Website 1+ mentions |
iReceptor (RRID:SCR_022294) | data or information resource, portal, topical portal | Data discovery platform that facilitates curation, analysis and sharing of antibody/B-cell and T-cell receptor repertoires from multiple labs and institutions. Used to increase value of data through sharing with community. Platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories. | Adaptive Immune Receptor Repertoire, AIRR-seq data, querying and analyzing, antibody, B-cell, T-cell, receptor, federated repositories, data discovery | is related to: AIRR Data Commons | PMID:29944754 | Free, Freely available | SCR_022294 | SciCrunch Registry | 2026-11-07 12:00:55 | 6 | |||||||||
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Brain Observatory Resource Report Resource Website |
Brain Observatory (RRID:SCR_010641) | Brain Observatory | biospecimen repository, data or information resource, material storage repository, portal, service resource, storage service resource, topical portal, video resource | Formerly a topical portal studying the brain which collected and imaged 1000 human brains, the Brain Observatory has partnered with the Institute for Brain and Society to build virtual laboratories that will feed directly into the database of images and knowledge created in the context of the Human Brain Library. The Brain Observatory will also host exhibits, conferences, and events aimed at promoting a heightened awareness of brain research and how its results can benefit personal brain fitness and mental health. | human, brain, visual cortex, neuroimaging | has parent organization: University of California San Diego School of Medicine; California; USA | Human immunodeficiency virus, NeuroAIDS, AIDS, Amnesia | NIMH ; NSF ; The Dana Foundation ; NEI |
Public | nlx_69083 | http://thebrainobservatory.ucsd.edu/ | SCR_010641 | SciCrunch Registry | The Brain Observatory | 2026-11-07 11:57:09 | 0 | ||||
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Culture Collection of Algae at the University of Texas Resource Report Resource Website 10+ mentions |
Culture Collection of Algae at the University of Texas (RRID:SCR_016782) | UTEX | biospecimen repository, data or information resource, database, material storage repository, organization portal, portal, service resource, storage service resource | The UTEX Culture Collection of Algae includes different strains of living algae, representing most major taxa. Cultures in the Collection are used for research, teaching, biotechnology development, and various other projects throughout the world. | culture, collection, algae | has parent organization: University of Texas at Austin; Texas; USA | College of Natural Sciences of The University of Texas at Austin ; U.S. National Science Foundation |
Commercially available | SCR_016782 | SciCrunch Registry | The UTEX Culture Collection of Algae, Culture Collection of Algae at the University of Texas, UTEX | 2026-11-07 11:58:41 | 33 | |||||||
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M-CHiPS Resource Report Resource Website 1+ mentions |
M-CHiPS (RRID:SCR_010944) | M-CHiPS | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | A microarray data warehouse integrated with a software platform for microarray data analysis. It can be used as a LIMS for DNA chip experiments, also. Unlike other microarray data repositories, it entirely dispenses with free-text format, instead holding all the information in a format ready for statistical analysis. | hybridization | is listed by: OMICtools | Account required | OMICS_00771 | SCR_010944 | SciCrunch Registry | Multi-Conditional Hybridization Intensity Processing System | 2026-11-07 11:57:08 | 3 | |||||||
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Kitware Resource Report Resource Website 10+ mentions |
Kitware (RRID:SCR_013989) | service resource, software repository, software resource | A software repository which provides open source software and technology for visualization, computer vision, medical imaging, data publishing, and quality software process solutions. Kitware also provides services such as creating customized applications for clients, porting their open-source tools to specialized computing platforms, and supporting their open-source software tools with documentation, professional consulting services, and software training. | software repository, open source, visualization, computer vision, medical imaging, data publishing, quality software process solutions |
is listed by: Connected Researchers is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: VTK CISG Registration Toolkit is related to: Connected Researchers is parent organization of: Midas Platform is parent organization of: ParaView is parent organization of: VolView is parent organization of: VTK |
PASCAL network of excellence ; Max-Planck Society ; Fraunhofer Society |
Open source | SCR_013989 | SciCrunch Registry | 2026-11-07 12:03:52 | 12 | |||||||||
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University of Delaware Center for Human Research Coordination Core Facility Resource Report Resource Website |
University of Delaware Center for Human Research Coordination Core Facility (RRID:SCR_029059) | access service resource, core facility, service resource | Core is focused on supporting researchers with participant recruitment, both on a small and large scale ensuring participant recruitment reflects the population and community across Delaware and neighboring Maryland and Pennsylvania communities. CHRC coordinates research subject logistics such as screening, scheduling, transportation, and reimbursement. CHRC also provides the university community with data management education, database set-up, repository maintenance, hardening and security. CHRC supports REDCap across UD and assists researchers in building and maintaining participant registries. | ABRF, participant recruitment, coordinate research subject logistics, data management education, database set-up, repository maintenance, |
is listed by: ABRF CoreMarketplace has parent organization: University of Delaware; Delaware; USA |
ABRF_6213 | https://coremarketplace.org/?FacilityID=6213&citation=1 | SCR_029059 | SciCrunch Registry | UD - Center for Human Research Coordination | 2026-11-07 12:07:32 | 0 | ||||||||
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Dat Project Resource Report Resource Website 1+ mentions |
Dat Project (RRID:SCR_015779) | community building portal, data or information resource, data repository, database, portal, protocol, service resource, storage service resource | Community portal for a distributed data sharing platform and open protocol for building apps. The Dat Project imagines a web of commons created by global communities on open and secure protocols. | data sharing, collaborative work | Knight Foundation ; Alfred P. Sloan Foundation |
Open Source, Freely available | SCR_015779 | SciCrunch Registry | The Dat Project, datproject.org, Dat Protocol, Dat | 2026-11-07 11:58:05 | 2 | |||||||||
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MassBank of North America Resource Report Resource Website 100+ mentions |
MassBank of North America (RRID:SCR_015536) | MoNA | data or information resource, database | Metadata-centric, auto-curating repository designed for storage and querying of mass spectral records. It contains metabolite mass spectra, metadata and associated compounds. | mass spectrometry, ms database, mass spectrometry database, mass spectral records, FASEB list | has parent organization: University of California at Davis; California; USA | Available for download, The scientific community can contribute to this resource | r3d100012318 | https://doi.org/10.17616/R3ND3Z | SCR_015536 | SciCrunch Registry | MassBank of North America (MoNA) | 2026-11-07 12:03:20 | 332 |
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