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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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NeLS Resource Report Resource Website 1+ mentions |
NeLS (RRID:SCR_016301) | NeLS | data or information resource, portal, organization portal | Web portal for the administration of Norwegian e-Infrastructure for Life Sciences. Enables Norwegian life scientists and their international collaborators to store, share, archive, and analyse their genomics scale data. NeLS is one of the packages of the ELIXIR.NO project. | genomic, data, analyze, store, share, archive, electronic, infrastructure, administration, Norway, bio.tools |
is listed by: bio.tools is listed by: Debian |
Research Council of Norway | Free, Freely available | biotools:nels | https://bio.tools/nels, https://github.com/elixir-no-nels/nels-core, https://bio.tools/nels | SCR_016301 | Norwegian e-Infrastructure for Life Sciences | 2026-08-11 09:43:16 | 3 | |||||
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National Plant Germplasm System (NPGS) Resource Report Resource Website 10+ mentions |
National Plant Germplasm System (NPGS) (RRID:SCR_016785) | NPGS | data or information resource, portal, organization portal | Cooperative effort by U.S. state and federal government and private organizations to preserve the genetic diversity of plants. The NPGS aids scientists and the need for genetic diversity by acquiring, preserving, evaluating, documenting and distributing crop germplasm. The NPGS is managed by the Agricultural Research Service (ARS), the in-house research agency of the United States Department of Agriculture (USDA). Funding for the NPGS comes primarily through appropriations from the U.S. Congress. | preserve, genetic, diversity, plant, germplasm, agriculture | U.S. Congress | SCR_016785 | National Plant Germplasm System, NPGS | 2026-08-11 09:43:22 | 23 | |||||||||
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CoMSES Net Resource Report Resource Website 1+ mentions |
CoMSES Net (RRID:SCR_017598) | data or information resource, portal, organization portal | Open community of researchers, educators, and professionals with goal of improving way we develop, share, use, and re-use agent based and computational models for study of social and ecological systems. Develops and maintains CoMSES Model Library, digital repository that supports discovery and good practices for software citation, digital preservation, reproducibility, and reuse. | Develop, share, reuse, computational, model, social, ecological, system, network, repository, citation, digital, preservation, reproducibility, archive | is listed by: DataCite | Restricted | DOI:10.25937 | https://doi.org/10.25937/, https://dx.doi.org/10.25937/ | SCR_017598 | Network for Computational Modeling in Social and Ecological Sciences | 2026-08-11 09:43:39 | 6 | |||||||
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Chinese National Compound Library Resource Report Resource Website 1+ mentions |
Chinese National Compound Library (RRID:SCR_018723) | CNCL | data or information resource, portal, organization portal | Library with storage capacity of over million compounds possessing diversified structures. Coupled with this library will be advanced sample handling, information management and quality control systems. As important material and information resource, CNCL will work with both domestic and international stakeholders to promote sustained development of Chinese pharmaceutical industry. | Library, compound library, compound, diversified structure, sample handling, information management, quality control, pharmaceutical industry | SCR_018723 | 2026-08-11 09:44:01 | 1 | |||||||||||
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SouthernBiotech Resource Report Resource Website 100+ mentions |
SouthernBiotech (RRID:SCR_019250) | reagent supplier, material resource | Commercial antibody company that focuses on the development, production, purification, conjugation, and commercialization of antibodies. | commercial, antibody, reagent, biomedical, research | SCR_019250 | 2026-08-11 09:43:56 | 134 | ||||||||||||
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Leinco Technologies Resource Report Resource Website 1+ mentions |
Leinco Technologies (RRID:SCR_019252) | reagent supplier, material resource | A manufacturer of early discovery research products including antibodies, recombinant proteins, ELISA kits, second step reagents and other life sciences products. | commercial, antibody, reagent, biomedical, research, biotechnology, ELISA, recombinant, proteins, life science | SCR_019252 | 2026-08-11 09:44:07 | 2 | ||||||||||||
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OCICB Resource Report Resource Website |
OCICB (RRID:SCR_016597) | OCICB | data or information resource, portal, organization portal | Office of Cyber Infrastructure and Computational Biology of NIAID. | office, cyber, infrastructure, computational, biology, NIAID |
has parent organization: NIAID is parent organization of: Nephele |
NIH | SCR_016597 | Office of Cyber Infrastructure and Computational Biology | 2026-08-11 09:43:20 | 0 | ||||||||
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NEST Initiative Resource Report Resource Website 1+ mentions |
NEST Initiative (RRID:SCR_020978) | data or information resource, portal, organization portal | Incorporated as non-profit member based organization promoting scientfic collaboration in computational neuroscience.Advances computational neuroscience by pushing limits of large scale simulations of biologically realistic neuronal networks. | Computational neuroscience collaboration, member based organization, large scale simulations, biologically realistic neuronal networks | is parent organization of: NEST Simulator | SCR_020978 | Neural Simulation Technology Initiative | 2026-08-11 09:43:59 | 1 | ||||||||||
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Natural Stress Relief Resource Report Resource Website |
Natural Stress Relief (RRID:SCR_015898) | NSR | data or information resource, portal, organization portal | Organization that provides instructions for and research on the Natural Stress Relief (NSR) meditation method. | stress, relief, natural, organization, non-profit, research, mediation | SCR_015898 | 2026-08-11 09:43:13 | 0 | |||||||||||
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Concierge Resource Report Resource Website 10+ mentions |
Concierge (RRID:SCR_002386) | Concierge | data management software, software resource, software application | A data management tool which stores, classifies and manages digital resources such as publications, experimental data, presentation files, etc, together with its metadata. A key feature of the software is a high level of extensibility. By installing optional plug-ins, users can customize and extend the usability of the software based on their needs. It has a function of sharing data with open digital archives based on the XooNIps system, such as neuroinformatics platforms in operation and publicly available at J-Node (http://www.neuroinf.jp). The Concierge Project is a part of neuroinformatics research by Laboratory for Neuroinformatics in RIKEN Brain Science Institute. Concierge's primary goal is to encourage research resource sharing in neuroscience communities. A key feature of the software is its pluggable configuration. Based on the basic functions, various applications can be developed as plug-ins. It has already developed several application plug-ins specific to neuroscience research, e.g. literature manager, electronic laboratory notebook, etc. | literature manager, labnote, electronic laboratory notebook, plug-in, resource management, resource sharing |
is related to: XooNIps - Neuroinformatics Base Platform System has parent organization: RIKEN Brain Science Institute |
PMID:18974800 | Open unspecified license; Mac OS X and Windows XP versions | nif-0000-00379 | SCR_002386 | Concierge: Personal Database Software for Managing Digital Research Resources, Concierge Project, Concierge: Personal Database Software for Digital Research Resources, The Concierge Project: Personal Database Software for Digital Research Resources | 2026-08-11 09:40:35 | 12 | ||||||
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NCI Mouse Repository Resource Report Resource Website 10+ mentions |
NCI Mouse Repository (RRID:SCR_002264) | NCIMR | biomaterial supply resource, organism supplier, material resource | The NCI Mouse Repository cryoarchives and distributes strains of genetically engineered mice that are of immediate interest to the cancer research community. These are either gene-targeted or transgenic mice that display a cancer-related phenotype, or tool strains (e.g., cre transgenics) that can be used to develop new cancer models. You do not have to be a member of the NCI Mouse Repository or a recipient of NCI funding to have your mouse model distributed through the NCI Mouse Repository. NCI Mouse Repository strains are maintained as live colonies or cryoarchived as frozen embryos, depending on demand. Up to three breeder pairs may be ordered from live colonies. Cryoarchived strains are supplied as frozen embryos or recovery of live mice by the NCI Mouse Repository may be requested. | embryo, engineered, frozen, gene, genetically, breed, breeder, cancer, colony, cryoarchive, human, live, model, mouse model, phenotype, strain, transgenic, mutant, female, male |
is listed by: One Mind Biospecimen Bank Listing has parent organization: NCI-Frederick |
NCI | Free, Freely available | nif-0000-20985 | http://mouse.ncifcrf.gov/ | SCR_002264 | MMHCC, MMHCC Repository, Mouse Models of Human Cancers Consortium (MMHCC) Repository, Mouse Models of Human Cancers Consortium Repository | 2026-08-11 09:40:30 | 19 | |||||
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Human Brain Project EU Resource Report Resource Website 50+ mentions |
Human Brain Project EU (RRID:SCR_002241) | HBP EU, HBP, European HBP, | data or information resource, portal, funding resource, organization portal | Global, collaborative effort for neuroscience, medicine and computing to understand brain, its diseases and its computational capabilities. Goal is to obtain access to research, data sources, platforms and infrastructures offered by other organisations, and enabling organizations outside HBP to use HBP platforms to pursue their own research. Coordinating these activities is the responsibility of the European Research Programme. | brain, ethics, neuroscience, medicine, computing, treatment, brain disease, neuroinformatics, software development, computational modeling, software, connectomics |
is related to: BigBrain is related to: Julich-Brain Cytoarchitectonic Atlas is parent organization of: subcellular application is parent organization of: Subcellular App |
Restricted | nlx_155553 | SCR_002241 | European Human Brain Project | 2026-08-11 09:40:34 | 69 | |||||||
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National Gnotobiotic Rodent Resource Center Resource Report Resource Website 10+ mentions |
National Gnotobiotic Rodent Resource Center (RRID:SCR_002768) | biomaterial supply resource, organism supplier, material resource | Material resource that provides germ-free and selectively colonized rodents to requesting investigators. Germ-free rodents are axenic, with no detectible bacteria, yeast, molds, parasites or viruses (except retroviruses). | embryo, axenic, bacteria, germ, mold, mouse, parasite, rat, retrovirus, rodent, specie, strain, virus, yeast | has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA | NIH Office of the Director P40 OD010995 | Free | nif-0000-24375 | SCR_002768 | NGRRC | 2026-08-11 09:40:43 | 12 | |||||||
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CRE Driver Network Resource Report Resource Website 1+ mentions |
CRE Driver Network (RRID:SCR_002720) | CRE Driver Network | biomaterial supply resource, organism supplier, material resource | Project to provide Neuroscience Community with mouse strains that are suitable for tissue and cell-type-specific perturbation of gene function in nervous system. NIH Neuroscience Blueprint has established three centers in the USA for generation of genetically modified mice expressing CRE recombinases in nervous system on the C57BJ/6 genetic background. Mouse lines are generated at Cold Spring Harbor Lab, at Scripps Research Institute, and at Baylor College of Medicine. | cre-recombinase, expression, neuroscience, mutant mouse strain, knock out mouse, phenotype, expression profile, image collection, microarray, electrophysiology, atlas, morphology, cell, annotation |
is related to: JAX Cre Repository is related to: Recombinase (cre) Activity has parent organization: NIH Blueprint for Neuroscience Research is parent organization of: Mouse Neuronal Expression Database |
NIH Blueprint for Neuroscience Research ; NIH |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-23753 | SCR_002720 | Mouse Models for Neuroscience Research, CRE-driver Network, CRE-Driver Network, NIH Neuroscience Blueprint CRE Driver Network | 2026-08-11 09:40:36 | 9 | ||||||
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CKAN Resource Report Resource Website 10+ mentions |
CKAN (RRID:SCR_002622) | CKAN | data management software, software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. A complete out-of-the-box data management software solution that makes data accessible by providing tools to streamline publishing, sharing, finding and using data. CKAN is aimed at data publishers (national and regional governments, companies and organizations) wanting to make their data open and available. It uses its internal model to store metadata about the different records, and presents it on a web interface that allows users to browse and search this metadata. It also offers a powerful API that allows third-party applications and services to be built around it. CKAN is built with Python on the backend and Javascript on the frontend, and uses the Pylons web framework and SQLAlchemy as its ORM. Its database engine is PostgreSQL and its search is powered by SOLR. It has a modular architecture that allows extensions to be developed to provide additional features such as harvesting or data upload. CKAN is currently used by governments and user groups worldwide to power both official and community data portals. | data management, python, javascript |
is used by: Datahub is listed by: FORCE11 |
Free, Freely available | nlx_156038 | http://www.force11.org/node/4698 | SCR_002622 | ckan - The open source data portal software | 2026-08-11 09:40:37 | 19 | ||||||
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bioDBcore Resource Report Resource Website 1+ mentions |
bioDBcore (RRID:SCR_002781) | BioDBCore | data or information resource, database, standard specification, narrative resource | A community-defined, uniform, generic description of the core attributes of biological databases. The BioDBCore checklist is overseen by the International Society for Biocuration (ISB), in collaboration with the BioSharing forum. A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them have been partly compiled with the support of Oxford University Press and Re3Data.org. Database providers are encouraged to either create or claim their BioDBCore entry and update it as appropriate., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 15,2026. | resource representation, resource ontology, database, interoperability, semantic standard, syntactic standard, biological database, model |
is used by: NIF Data Federation is listed by: 3DVC is listed by: Biositemaps is related to: FAIRsharing is related to: Biocatalogue - The Life Science Web Services Registry is related to: BioGPS: The Gene Portal Hub is related to: Bioinformatics Links Directory is related to: Biomedical Resource Ontology is related to: EDAM Ontology is related to: MIRIAM: Minimal Information Required In the Annotation of Models is related to: SciCrunch Registry is related to: PathGuide: the pathway resource list is related to: Integrated Manually Extracted Annotation has parent organization: University of Oxford; Oxford; United Kingdom |
PMID:21205783 PMID:21097465 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-24395 | SCR_002781 | 2026-08-11 09:40:37 | 2 | |||||||
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Short Course on the Genetics and Epigenetics of Addiction National Institute on Drug Abuse: Archived Video Resource Report Resource Website |
Short Course on the Genetics and Epigenetics of Addiction National Institute on Drug Abuse: Archived Video (RRID:SCR_002783) | video resource, data or information resource, short course material, narrative resource, training material | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. An archived video on the web providing comprehensive and hands-on training in genetics and epigenetic methodology. The purpose of the course is to provide an introduction to approaches and tools for identifying genes that confer vulnerability to addiction and individual differences in responses to treatments. The course is targeted to those who are new to the field of addiction genetics. The course was held over 5 days with lectures and hands-on demonstrations given each day. Viewers of the course will gain familiarity with conceptual and practical approaches to complex disorders using relevant genetic and epigenetic databases, and appropriate statistical and empirical approaches. Topics covered Behavioral genetics, genetic epidemiology, twin and adoption studies, statistical genetic concepts and approaches for mapping complex traits, haplotype based approaches for association mapping, genome-wide scans for addictive disorders, application of linkage for mapping genes and genetic loci for addictive disorders, pharmacogenomics of treatment of addictive disorders, Baysian Methods for identifying gene-gene interactions, analysis of copy number variation, practical use of genetic databases, mapping of complex traits in mice, methods for analyzing gene expression, and methods for doing epigenetic analysis are covered. The course was held April 4, 2008, at the Bethesda North Marriott Hotel and Conference Center, 5701 Marinelli Road, Bethesda, MD 20852. | epigenetic, gene-gene interactions, genes, genetic, genetic epidemiology, genetic loci, addiction, addiction genetics, addictive disorders, adoption studies, association mapping, baysian methods, behavioral genetics, complex traits, copy number variation, genome-wide scans, haplotype, mapping, mapping genes, methodology, mice, pharmacogenomics, twin studies | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00438 | http://drugabuse.gov/about/organization/Genetics/geneticsepigenetics/index.html | SCR_002783 | Genetics and Epigenetics of Addiction | 2026-08-11 09:40:38 | 0 | ||||||||
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GeneDB Resource Report Resource Website 100+ mentions |
GeneDB (RRID:SCR_002774) | GDB, GeneDB | data or information resource, database, training resource, data set, workshop | Database of genomes at various stages of completion, from early access to partial genomes with automatic annotation through to complete genomes with extensive manual curation. Its primary goals are: 1) to provide reliable access to the latest sequence data and annotation/curation for the whole range of organisms sequenced by the Pathogen group, and 2) to develop the website and other tools to aid the community in accessing and obtaining the maximum value from these data. | schizosaccharomyces, pombe, leishmania, major, trypanosoma, brucei, functional, genomics, proteomics, apicomplexan, protozoa, kinetoplastid, parasitic, helminths, bacteria, parasite vector, virus, FASEB list |
is related to: TriTrypDB is related to: Integrated Manually Extracted Annotation has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: GeneDB Gmorsitans is parent organization of: GeneDB Lmajor is parent organization of: GeneDB Tbrucei is parent organization of: GeneDB Pfalciparum is parent organization of: GeneDB Spombe |
Wellcome Trust | PMID:14681429 | Free | nif-0000-02880, r3d100010626 | https://doi.org/10.17616/R31C8X | http://old.genedb.org/, http://www.gdb.org/ | SCR_002774 | GDB, Gene DB | 2026-08-11 09:40:38 | 430 | |||
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brainmap.org Resource Report Resource Website 100+ mentions |
brainmap.org (RRID:SCR_003069) | BrainMap | data or information resource, database, software resource, software application | A community database of published functional and structural neuroimaging experiments with both metadata descriptions of experimental design and activation locations in the form of stereotactic coordinates (x,y,z) in Talairach or MNI space. BrainMap provides not only data for meta-analyses and data mining, but also distributes software and concepts for quantitative integration of neuroimaging data. The goal of BrainMap is to develop software and tools to share neuroimaging results and enable meta-analysis of studies of human brain function and structure in healthy and diseased subjects. It is a tool to rapidly retrieve and understand studies in specific research domains, such as language, memory, attention, reasoning, emotion, and perception, and to perform meta-analyses of like studies. Brainmap contains the following software: # Sleuth: database searches and Talairach coordinate plotting (this application requires a username and password) # GingerALE: performs meta-analyses via the activation likelihood estimation (ALE) method; also converts coordinates between MNI and Talairach spaces using icbm2tal # Scribe: database entry of published functional neuroimaging papers with coordinate results | 3d model, atlas, data management, imaging, map, neuroinformatics, warping, neuroimaging, brain, talairach, mni, java, modeling, magnetic resonance, nifti-1, ontology, os independent, pet, spect, visualization, functional neuroimaging, fmri |
uses: Scribe is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Brede Database has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA is parent organization of: Sleuth is parent organization of: GingerALE |
Healthy, Diseased | NIMH 2R01-MH074457 | PMID:15897617 PMID:11967563 PMID:15846810 |
Free, Freely available | nif-0000-00049 | http://www.nitrc.org/projects/brainmap | SCR_003069 | BrainMap Database | 2026-08-11 09:40:40 | 484 | |||
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University of Southern California LONI Software Resource Report Resource Website 10+ mentions |
University of Southern California LONI Software (RRID:SCR_002802) | data or information resource, topical portal, portal | Portal provides list of software resources. LONI is leader in development of advanced computational algorithms and software for comprehensive and quantitative mapping of brain structure and function. Aims to encourage communication between users and LONI software engineers in order to improve effectiveness. | visualization, image processing, shape analysis, pre-processing, registration, segmentation, statistical analysis, surface modeling, data management | NIH Roadmap for Medical Research ; NCRR U54 RR021813 |
Free, Freely available, Available for download | nif-0000-00445, nif-0000-00063, SCR_003323 | http://www.loni.ucla.edu/Software/ | SCR_002802 | 2026-08-11 09:40:37 | 11 |
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