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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Topographica Resource Report Resource Website 1+ mentions |
Topographica (RRID:SCR_014174) | simulation software, software application, software resource | A software package for computational modeling of neural maps developed as part of the NIMH Human Brain Project. Topographica focuses on the large-scale structure and function that is visible only when many thousands of such neurons are connected into topographic maps containing millions of connections. The software package provides a general-purpose framework for building models at this level, at an appropriate level of detail and complexity, as determined by the available computing power, phenomena of interest, and amount of biological data available for validation. It is intended to complement low-level neuron simulators that are available, such as General Neural Simulation System and NEURON. | computational modeling, neural map, simulation software, neuron |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: General Neural Simulation System is related to: NEURON |
NIMH Human Brain Project 1R01-MH66991 | SCR_014174 | 2026-08-04 09:43:22 | 5 | ||||||||||
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Displacement Field Viewer Resource Report Resource Website |
Displacement Field Viewer (RRID:SCR_014101) | data processing software, data visualization software, software application, software resource | A tool for visualizing displacement fields estimated in association with image registration. Based on the displacement vector field, a mesh is generated for visualization. The mesh can be color mapped with the jacobian determinant at each point for better localization of regions that undergo compression or expansion. Other key features include: view synchronization, adjustable mesh resolution, and conversion from deformation and HAMMER displacement fields. | data visualization software, displacement field, mesh, vector, field visualization |
uses: Insight Segmentation and Registration Toolkit is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
Available for download, Free for non-commercial use | http://www.nitrc.org/plugins/mwiki/index.php/dfviewer:MainPage | SCR_014101 | DFViewer | 2026-08-04 09:43:20 | 0 | ||||||||
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Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND) Resource Report Resource Website 10+ mentions |
Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND) (RRID:SCR_014186) | FRIEND | data processing software, standalone software, software resource, software application, image processing software | A GUI-based software for real-time fMRI processing, multivoxel pattern decoding and neurofeedback. The package integrates routines for image preprocessing in real-time, ROI-based feedback and brain decoding-based feedback using the FSL and libSVM libraries. Users can create or employ pre-specified visual stimuli for neurofeedback experiments. FRIEND can be used as Windows standalone software or as a multiplatform toolbox (called FRIEND Engine). | real time, fmri, processing, neuro feedback, standalone software, toolbox, |
uses: FSL uses: LIBSVM is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Public, Available to the research community, The community can contribute to this resource | SCR_014186 | 2026-08-04 09:43:21 | 12 | |||||||||
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Functional Mixed Processes Models Resource Report Resource Website |
Functional Mixed Processes Models (RRID:SCR_014187) | FMPM | data processing software, data analysis software, software resource, software application, workflow software | A tool which implements a functional analysis pipeline for the joint analysis of longitudinally measured functional data and clinical data (for example age, gender and disease status). FMPM consists of a functional mixed effects model for characterizing the association of functional response with covariates of interest by incorporating complex spatial–temporal correlation structure, an efficient method for spatially smoothing varying coefficient functions, an estimation method for estimating the spatial– temporal correlation structure, a test procedure with local and global test statistics for testing hypotheses of interest associated with functional response, and a simultaneous confidence band for quantifying the uncertainty in the estimated coefficient functions. | workflow software, data analysis software, analysis pipeline, longitudinal, functional data, clinical data | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Public, Available to the research community | SCR_014187 | 2026-08-04 09:43:21 | 0 | |||||||||
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XNBC Resource Report Resource Website |
XNBC (RRID:SCR_014182) | simulation software, software application, software resource | A full featured and extensible application which simulates biological neural networks using graphic tools which edit neurons and networks, run the simulation and analyze results. It is written in C and runs on Unix and Windows. It is specifically targeted for neuroscientists who are less experienced with computer programming. | simulation software, biological neuron network, neuron, graphic tool, unexperienced programmer, unexperienced with computers |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Sorbonne University; Paris; France |
Available to the research community | http://ticemed-sa.upmc.fr/xnbc/ | SCR_014182 | 2026-08-04 09:43:22 | 0 | |||||||||
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Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations Resource Report Resource Website 1+ mentions |
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations (RRID:SCR_014168) | data or information resource, image collection | This resource provides simulated DW-MRI brain images and quantitative tools for evaluating the performance of diffusion analysis methods in terms of fiber orientation estimation and false-positive/-negative fiber rates, which are of fundamental importance to tractography based studies. DW data was generated using a multi-tensor model at SNRs of 9, 18 and 36, for sets of 20, 30, 40, 60, 90 and 120 gradient directions. For each combination of SNR and gradient direction set, 10 realizations of data are provided. All data is simulated with a diffusion-weighting of b=1000, as is common for clinical acquisitions. | brain image, dw mri, diffusion analysis | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | SCR_014168 | 2026-08-04 09:43:21 | 1 | |||||||||||
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Prediction and Diagnosis for Depression and Schizophrenia Resource Report Resource Website |
Prediction and Diagnosis for Depression and Schizophrenia (RRID:SCR_014161) | topical portal, portal, data or information resource | A topical portal for the UAIS Lab of Lanzhou University which researches predicting depression and schizophrenia based on demographics and physiological information (EEG, ERPs, Genetics, MRI, fMRI, etc.). It also researches wearable bio-signal sensors and antennas, bio-signal processing, speech analysis, pervasive mental health, psycho-physiological computing, bioinformatics and multimodal data fusion and modeling. | topical portal, lab, depression, schizophrenia, demographic, physiological | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Depression, Schizophrenia | Public | http://www.nitrc.org/projects/zhangxw | SCR_014161 | UAIS Lab of Lanzhou University | 2026-08-04 09:43:21 | 0 | |||||||
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BrainVoyager Brain Viewer Resource Report Resource Website |
BrainVoyager Brain Viewer (RRID:SCR_006755) | data processing software, data visualization software, software application, software resource | Software that supports browsing and inspecting essential BrainVoyager data files as well as the header and content of DICOM files. The Viewer supports standard image files (JPEG, GIF, PNG, TIFF, BMP) allowing to inspect snapshots, figures or photos. Users can prepare a folder with selected data of a subject (VMRs, SRFs, Maps, snapshot images), which allows participants of fMRI measurements to browse their brain data and to show it to others. The Viewer can be handed over to colleagues not having a BrainVoyager license together with relevant data. This will allow them to view and explore your analyzed data files. | dicom, brainvoyager, jpeg, gif, png, tiff, bmp, image, c++, ct, dicom, microsoft, magnetic resonance, pet, spect, visualization, win32 (ms windows), windows, windows xp |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Brain Innovation: Home of the BrainVoyager Product Family |
Free, Available for download | nlx_144321 | http://www.nitrc.org/projects/bvviewer | SCR_006755 | BranVoyager, BV Brain Viewer | 2026-08-04 09:41:41 | 0 | |||||||
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DW-MRI Random Walk Simulator Resource Report Resource Website |
DW-MRI Random Walk Simulator (RRID:SCR_006652) | DW-MRI Random Walk Simulator | simulation software, software application, software resource | A simple interface to simulate Brownian motion in arbitrary, complex environments. The analysis routines enable visualization of these models with DTI, q-space, and higher order diffusion weighted MRI. | java, macos, matlab, microsoft, modeling, monte carlo, magnetic resonance, posix/unix-like, random walk, simulation, dti, q-space, diffusion weighted mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: INCF Software Center |
GNU Lesser General Public License | nlx_155873 | http://www.nitrc.org/projects/randomwalks | SCR_006652 | 2026-08-04 09:41:38 | 0 | |||||||
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MABMIS: Multi-Atlas Based Multi-Image Segmentation Resource Report Resource Website |
MABMIS: Multi-Atlas Based Multi-Image Segmentation (RRID:SCR_006975) | MABMIS | segmentation software, data processing software, software resource, software application, image analysis software | This software package implements an algorithm for accurate and consistent segmentation / labeling on a group of images. The images should be in Analyze format with paired header and image files. All images should be preprocessed so that they have been affinely aligned together. | magnetic resonance, analyze, groupwise registration, label, atlas |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill School of Medicine; North Carolina; USA |
PMID:21807102 | Free, For academic research purposes, Http://bric.unc.edu/ideagroup/free-softwares/ | nlx_155790 | http://www.nitrc.org/projects/mabmis | SCR_006975 | Multi-Atlas Based Multi-Image Segmentation, MABMIS: Multi-Atlas Based Segmentation | 2026-08-04 09:41:43 | 0 | |||||
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MRtrix Resource Report Resource Website 100+ mentions |
MRtrix (RRID:SCR_006971) | MRtrix | data processing software, source code, software resource, software application, software toolkit | A set of tools to perform diffusion-weighted MRI white matter tractography in the presence of crossing fibres, using Constrained Spherical Deconvolution (Tournier et al.. 2004; Tournier et al. 2007), and a probabilisitic streamlines algorithm (e.g. Behrens et al., 2003; Parker et al., 2003). These applications have been written from scratch in C++, using the functionality provided by the GNU Scientific Library, and gtkmm. The software is currently capable of handling DICOM, NIfTI and AnalyseAVW image formats, amongst others. Installation * Unix/Linux * Microsoft Windows * Mac Os X, THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | white matter tractography, diffusion mri, tractography, fiber tracking, crossing fiber, constrained spherical deconvolution, diffusion mr fiber tracking, image display, dti, linux, c++, analyze, bshort, bfloat, dicom, nifti-1, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is related to: Diffusion MRI of Traumatic Brain Injury is related to: neurodebian has parent organization: Florey Institute of Neuroscience and Mental Health; Victoria; Australia |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153918 | http://www.nitrc.org/projects/mrtrix/, https://sources.debian.org/src/mrtrix/ | SCR_006971 | 2026-08-04 09:41:43 | 205 | |||||||
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VAMCA Resource Report Resource Website |
VAMCA (RRID:SCR_007028) | VAMCA | data processing software, data visualization, software resource, software application, image analysis software, software toolkit | A stand-alone, open source human cortical meta-analysis and visualization toolbox for MatLab. It projects stereotaxic coordinates to a mean cortical surface by using an anatomical database of 60 young adults to provide multiple mappings of normalized cortical surfaces into MNI space. VAMCA performs the following analyses: # Multi-Fiducial Projection Mapping: Map stereotaxic 3D coordinates to the normalized cortical location for each of 60 database subjects. # Computing Centroid Locations for groups of foci both on a mean cortical surface and in MNI space. # Comparing Two Groups of Foci for differences in location (surface or 3D) of their group centroids and computing the groups' overlap extent using permutation tests. # Detecting Significant Densities of Foci or Density Differences of Two Groups within anatomical ROIs on a mean cortical surface by using Monte Carlo analyses. Coordinate weights allow fixed or random effects type analyses. | database application, linux, matlab, microsoft, magnetic resonance, posix/unix-like, visualization, windows, windows 95/98/2000, windows nt/2000, windows xp, mni, adult human |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Davis; California; USA |
Creative Commons Attribution License | nlx_156010 | http://www.nitrc.org/projects/vamca | SCR_007028 | VAMCA: Visualization And Meta-analysis on Cortical Anatomy, VAMCA Cortical Meta-analysis Toolbox, Visualization And Meta-analysis on Cortical Anatomy | 2026-08-04 09:41:45 | 0 | ||||||
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BrainMaps.org Resource Report Resource Website 50+ mentions |
BrainMaps.org (RRID:SCR_006878) | BrainMaps | image repository, storage service resource, data repository, service resource, atlas, data or information resource | An interactive multiresolution brain atlas that is based on over 20 million megapixels of sub-micron resolution, annotated, scanned images of serial sections of both primate and non-primate brains and integrated with a high-speed database for querying and retrieving data about brain structure and function. Currently featured are complete brain atlas datasets for various species, including Macaca mulatta, Chlorocebus aethiops, Felis catus, Mus musculus, Rattus norvegicus, Tyto alba and many other vertebrates. BrainMaps is currently accepting histochemical, immunocytochemical, and tracer connectivity data, preferably whole-brain. In addition, they are interested in EM, MRI, and DTI data. | aves, brain connection, callicebus moloch, c. auratus, connectivity, monodelphis, o. anatinus, tachyglossidae, brain mapping, virtual microscopy, brain atlas, non-primate, nissl stain, nissl, parvalbumin, smi-32, acetylcholinesterase, luxol fast blue, calbindin, myelin, neuroanatomy, image, brain structure, brain function, database, serial section, brain, tract tracing, coronal, horizontal, sagittal, web service, gene, FASEB list |
is used by: NIF Data Federation is used by: Integrated Datasets is used by: Integrated Nervous System Connectivity is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Davis; California; USA |
NIMH 2 P20 MH60975; NIMH R01 MH77556 |
PMID:17229579 | Acknowledgement requested | nif-0000-00093, r3d100012117 | http://www.nitrc.org/projects/brainmaps, https://doi.org/10.17616/R3Q64W | SCR_006878 | BrainMaps: An Interactive Multiresolution Brain Atlas, BrainMaps.org: High Resolution Brain Atlases, BrainMaps | 2026-08-04 09:41:42 | 78 | ||||
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PRoNTo Resource Report Resource Website 100+ mentions |
PRoNTo (RRID:SCR_006908) | PRoNTo | data processing software, software resource, software application, image analysis software, data analytics software, software toolkit | A software toolbox based on pattern recognition techniques for the analysis of neuroimaging data. Statistical pattern recognition is a field within the area of machine learning which is concerned with automatic discovery of regularities in data through the use of computer algorithms, and with the use of these regularities to take actions such as classifying the data into different categories. In PRoNTo, brain scans are treated as spatial patterns and statistical learning models are used to identify statistical properties of the data that can be used to discriminate between experimental conditions or groups of subjects (classification models) or to predict a continuous measure (regression models). | reusable library, clinical neuroinformatics, matlab, magnetic resonance, nifti, os independent, pet, spect, neuroimaging, pattern recognition |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University College London; London; United Kingdom |
GNU General Public License | nlx_155916 | http://www.nitrc.org/projects/pronto | SCR_006908 | PRoNTo (Pattern Recognition for Neuroimaging Toolbox), Pattern Recognition for Neuroimaging Toolbox, PRoNTo - Pattern Recognition for Neuroimaging Tool | 2026-08-04 09:41:42 | 196 | ||||||
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NIH Human Connectome Project Resource Report Resource Website 10+ mentions |
NIH Human Connectome Project (RRID:SCR_006942) | HCP | portal, organization portal, data or information resource, consortium | Project to map the neural pathways that underlie human brain function for several modalities of neuroimaging data including fMRI. The purpose of the Project is to acquire and share data about the structural and functional connectivity of the human brain. It will greatly advance the capabilities for imaging and analyzing brain connections, resulting in improved sensitivity, resolution, and utility, thereby accelerating progress in the emerging field of human connectomics. Altogether, the Human Connectome Project will lead to major advances in the understanding of what makes us uniquely human and will set the stage for future studies of abnormal brain circuits in many neurological and psychiatric disorders. The sixteen institutes and centers of the NIH Blueprint for Neuroscience have funded two major grants that will take complementary approaches to deciphering the brain's amazingly complex wiring diagram. An 11-institution consortium led by Washington University in St. Louis and the University of Minnesota received a 5-year grant to enable development and utilization of advanced Magnetic Resonance Imaging (MRI) methods to chart brain circuitry. A consortium led by Massachusetts General Hospital and the University of California at Los Angeles received a grant to enable building and refining a next-generation 3T MR scanner that improves the quality and spatial resolution with which brain connectivity data can be acquired at this field strength. | brain, function, neural pathway, connectivity, human, community, data resource, eeg, meg, electrocorticography, funding resource, hardware, imaging genomics, knowledge environment, magnetic resonance, software, fmri |
is used by: DataLad is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: NIH Data Sharing Repositories is related to: NIH Data Sharing Repositories is related to: BCBtoolkit has parent organization: National Institutes of Health is parent organization of: MGH-USC Human Connectome Project is parent organization of: Human Connectome Coordination Facility |
NIH Blueprint for Neuroscience Research | nlx_143921 | http://www.nitrc.org/projects/hcp | SCR_006942 | Human Connectome Project, Human Connectome Project (HCP) | 2026-08-04 09:41:44 | 13 | ||||||
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Whole Brain Catalog Resource Report Resource Website 1+ mentions |
Whole Brain Catalog (RRID:SCR_007011) | WBC | simulation software, image repository, storage service resource, software resource, software application, data repository, service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 26, 2016. An open source, downloadable, 3d atlas of the mouse brain and its cellular constituents that allows multi-scale data to be visualized in a seamless way, similar to Google earth. Data within the Catalog is marked up with annotations and can link out to additional data sources via a semantic framework. This next generation open environment has been developed to connect members of the neuroscience community to facilitate solutions for today's intractable challenges in brain research through cooperation and crowd sourcing. The client-server platform provides rich 3-D views for researchers to zoom in, out, and around structures deep in a multi-scale spatial framework of the mouse brain. An open-source, 3-D graphics engine used in graphics-intensive computer gaming generates high-resolution visualizations that bring data to life through biological simulations and animations. Within the Catalog, researchers can view and contribute a wide range of data including: * 3D meshes of subcellular scenes or brain region territories * Large 2D image datasets from both electron and light level microscopy * NeuroML and Neurolucida neuronal reconstructions * Protein Database molecular structures Users of the Whole Brain Catalog can: * Fit data of any scale into the international standard atlas coordinate system for spatial brain mapping, the Waxholm Space. * View brain slices, neurons and their animation, neuropil reconstructions, and molecules in appropriate locations * View data up close and at a high resolution * View their own data in the Whole Brain Catalog environment * View data within a semantic environment supported by vocabularies from the Neuroscience Information Framework (NIF) at http://www.neuinfo.org. * Contribute code and connect personal tools to the environment * Make new connections with related research and researchers 5 Easy Ways to Explore: * Explore the datasets across multiple scales. * View data closely at high resolution. * Observe accurately simulated neurons. * Readily search for content. * Contribute your own research. | crowd sourcing, mouse, brain, cell, neuron, simulation, microscopy, neuroscience, electron microscopy, light microscopy, bioinformatics, neuroinformatics, computational biology, biology, visualization, animation, molecular structure, neuronal reconstruction, subcellular, annotation |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is related to: NeuroLex is related to: Cell Centered Database is related to: Neuroscience Information Framework is related to: INCF Software Center has parent organization: University of California at San Diego; California; USA is parent organization of: Whole Brain Catalog Blog is parent organization of: WholeBrainCatalog's Channel - YouTube |
Waitt Family Foundation | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-23345 | http://www.nitrc.org/projects/incf_whole-brai | SCR_007011 | 2026-08-04 09:41:45 | 5 | ||||||
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Monte Carlo eXtreme Resource Report Resource Website 1+ mentions |
Monte Carlo eXtreme (RRID:SCR_007001) | MCX | simulation software, software application, software resource | A Monte Carlo simulation software for photon migration in 3D turbid media. It uses Graphics Processing Units (GPU) based massively parallel computing techniques and is extremely fast compared to the traditional single-threaded CPU-based simulations. Using an nVidia 8800GT graphics card (14MP/114Cores), the acceleration is about 300x~400x compared to a single core of Xeon 5120 CPU; this ratio can be as high as 700x with a GTX 280 GPU and 1400x with a GTX 470. | c, console (text based), macos, microsoft, modeling, monte carlo, optical imaging, other programming language, posix/unix-like, win32 (ms windows), windows |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: SourceForge |
GNU General Public License | nlx_155817 | http://www.nitrc.org/projects/mcextreme | SCR_007001 | Monte Carlo eXtreme (MCX) | 2026-08-04 09:41:44 | 2 | ||||||
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Function BIRN Resource Report Resource Website 1+ mentions |
Function BIRN (RRID:SCR_007291) | FBIRN | topical portal, portal, data or information resource | The FBIRN Federated Informatics Research Environment (FIRE) includes tools and methods for multi-site functional neuroimaging. This includes resources for data collection, storage, sharing and management, tracking, and analysis of large fMRI datasets. fBIRN is a national initiative to advance biomedical research through data sharing and online collaboration. BIRN provides data-sharing infrastructure, software tools, strategies and advisory services - all from a single source. | fmri, 3d model, data storage, imaging, map, morphology, mri, neuroinformatics, segmentation, software, talairach, volume, warping, analyze, application, c++, csh/tcsh, data, database, database application, data resource, dicom, javascript, linux, magnetic resonance, nifti, ontology, pl/sql, posix/unix-like, python, quality metrics, spatial transformation, statistical operation, tcl/tk, unix shell, visualization, web resource, web service, workflow |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Biomedical Informatics Research Network is parent organization of: BXH/XCEDE Tools is parent organization of: FBIRN Image Processing Scripts |
NIGMS ; NCRR 1U24-RR025736; NCRR U24-RR021992; NCRR U24-RR021760; NCRR 1U24-RR026057-01 |
nif-0000-00070 | http://www.nitrc.org/projects/fbirn | http://nbirn.net/tools/browse_tools.shtm | SCR_007291 | Functional Imaging BIRN | 2026-08-04 09:41:49 | 2 | |||||
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Manual Align RTS2000 Resource Report Resource Website |
Manual Align RTS2000 (RRID:SCR_007107) | data processing software, software application, image processing software, software resource | Software program to adjust the alignment of two adjacent images. Allows to correct for any misalignment that may occur during auto-alignment step. Serves as a bootstrap to get the images in approximately the right place. | alignment, process, image, adjust, correct, misalignment |
is affiliated with: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: National Center for Microscopy and Imaging Research |
NCRR P41 RR04050 | Free, no longer available | nif-0000-10514 | SCR_007107 | 2026-08-04 09:41:45 | 0 | ||||||||
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BrainVISA / Anatomist Resource Report Resource Website 100+ mentions |
BrainVISA / Anatomist (RRID:SCR_007354) | data processing software, software development tool, software resource, software application, image processing software, image analysis software, software development environment | BrainVISA is a modular an customizable software platform built to host heterogeneous tools dedicated to neuroimaging research. Many toolboxes have already been developed for BrainVISA (T1 MRI, sulcal identification and morphometry, cortical surface analysis, diffusion imaging and tractography, fMRI, nuclear imaging, EEG and MEG, TMS, histology and autoradiography, etc.). Anatomist is a software for interactive visualization of multimodal data and for manipulation of structured 3D objects. It allows to build scenes that merge or combine images, meshes, regions of interest, fibers, textures, color palettes, referential changes, etc. A user can interact in 3D and in real time with the objects of an Anatomist scene: change point of view, select objects, add/suppress objects, change colors, draw regions of interests, do manual registration, etc. BrainVISA main features are: * Harmonization of communications between different software. For instance, BrainVISA toolboxes are using home-made software but also third-party software such as FreeSurfer, FSL, SPM, nipy, R-project, Matlab, etc. * Ontology-based data organization allowing database sharing and automation of mass of data analysis. * Fusion and interactive visualization of multimodal data (using Anatomist software). * Automatic generation of graphical user interfaces. * Workflow monitoring and data quality checking. * Full customization possible. * Runs on Linux, Mac and Windows. * Programming Language: C++, Python * Supported Data Format: ANALYZE, DICOM, GIfTI, MINC, NIfTI-1, Other Format | neuroimaging, database, tensor metric, morphology, quantitative shape analysis, segmentation, spatial transformation, surface analysis, diffusion mr fiber tracking, visualization, platform environment, development environment, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: SPM is related to: BrainVisa Morphology extensions |
French Ministry of Higher Education and Research ; ACI telemedecine |
CeCILL license v2 | nif-0000-00264 | http://www.nitrc.org/projects/brainvisa, http://anatomist.info | SCR_007354 | BrainVISA/Anatomist, BrainVISA | 2026-08-04 09:41:49 | 232 |
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