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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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EQTL EXPLORER Resource Report Resource Website 1+ mentions |
EQTL EXPLORER (RRID:SCR_001123) | EQTL EXPLORER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. An eQTL visualization tool that allows users to mine and understand data from a repository of genetical genomics experiments (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | PMID:16357031 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154018 | SCR_001123 | SciCrunch Registry | 2026-11-07 12:03:01 | 2 | |||||||
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FAIRassist.org Resource Report Resource Website |
FAIRassist.org (RRID:SCR_024469) | data or information resource, organization portal, portal | Portal that aggregates tools that assist users ascertain FAIR-ness. Offers guidance to discover standards and repositories in FAIRsharing, which should be used to make data FAIR, as well as signpost other resources that enable FAIRness. | FAIR, FAIR tools, standards and repositories in FAIRsharing, FAIRsharing, resources to enable FAIRness, | has parent organization: University of Oxford; Oxford; United Kingdom | Free, Freely available | SCR_024469 | SciCrunch Registry | FAIR Assist, FAIRassist | 2026-11-07 12:03:21 | 0 | |||||||||
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Mycobrowser Resource Report Resource Website 100+ mentions |
Mycobrowser (RRID:SCR_018242) | data access protocol, data or information resource, database, portal, software resource, web service | Comprehensive and manually annotated resource for mycobacterial genomes. Genomic and proteomic data repository for pathogenic mycobacteria. Provides manually curated annotations and tools to facilitate genomic and proteomic study of these organisms. Integrates genome details, protein information, drug and transcriptome data, mutant and operon annotation. | has parent organization: Swiss Federal Institute of Technology Lausanne | tuberculosis, leprosy, mycobacterial infections | Bill & Melinda Gates Foundation | PMID:20980200 | Free, Freely available | SCR_018242 | SciCrunch Registry | Mycobacterial browser | 2026-11-07 11:58:58 | 129 | |||||||
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PKD Genome Browser Resource Report Resource Website |
PKD Genome Browser (RRID:SCR_023925) | data or information resource, database | Browser serves as repository of variants across exomes and targeted panel sequencing of individuals with polycystic kidney disease. Used to aggregate and harmonize exome and genome sequencing data from sequencing projects of PKD and to make summary data available to the wider scientific community. | Polycystic kidney disease, exomes and targeted panel sequencing, sequenced population, individuals with polycystic kidney disease, exome, genome sequencing data | Free, Freely available | https://github.com/leklab/pkd_browser | SCR_023925 | SciCrunch Registry | Polycystic Kidney Disease Genome Browser | 2026-11-07 12:04:12 | 0 | |||||||||
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MARS Developer Resource Report Resource Website |
MARS Developer (RRID:SCR_022346) | data analysis software, data processing software, software application, software resource | Software MARS based Python pipeline used for detection, pose estimation and behavior classification in experiments of any format. Repository contains all the code you'll need to train your own version of MARS. | OpenBehavior, behavior measurement, freely-moving, video analysis, realtime recording and analysis, offline analysis software |
is listed by: OpenBehavior is related to: Mouse Action Recognition System has parent organization: Northwestern University; Illinois; USA |
DOI:10.7554/eLife.63720 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/neuroethology-tools/ | SCR_022346 | SciCrunch Registry | 2026-11-07 12:00:56 | 0 | ||||||||
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Boston University Alzheimer's Disease Center Neuropathology Core Facility Resource Report Resource Website |
Boston University Alzheimer's Disease Center Neuropathology Core Facility (RRID:SCR_000513) | biomaterial supply resource, brain bank, material resource, tissue bank | The Neuropathology Core leads neuropathological analyses of brains donated by research registry participants of the Boston University Alzheimer's Disease Center. The Core works with the Clinical Core to carry out the Brain Tissue Donation Program, which provides brain tissue for analyses that will help to understand the underlying pathology of AD. The Core also works closely with the Data Management and Statistics Core to maintain a comprehensive computerized database of information resulting from neuropathological analyses. The Boston University Brain Bank of the Neuropathology Core documents neuropathological findings of Center research registry participants, but also of brain donors from important related BUSM studies such as the Framingham Heart Study and the Centenarian Study. | alzheimers disease, brain tissue, clinical data, brain bank, database, material storage repository, core facility |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Boston University Alzheimer's Disease Center |
Alzheimer's disease | National Institute on Aging | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_33878 | SCR_000513 | SciCrunch Registry | Boston University Alzheimer's Disease Center - Neuropathology, BU ADC Neuropathology, BU ADC Neuropathology Core, BU Alzheimer's Disease Center - Neuropathology, Boston University Alzheimer's Disease Center - Neuropathology Core | 2026-11-07 11:54:05 | 0 | ||||||
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Kitware Resource Report Resource Website 10+ mentions |
Kitware (RRID:SCR_013989) | service resource, software repository, software resource | A software repository which provides open source software and technology for visualization, computer vision, medical imaging, data publishing, and quality software process solutions. Kitware also provides services such as creating customized applications for clients, porting their open-source tools to specialized computing platforms, and supporting their open-source software tools with documentation, professional consulting services, and software training. | software repository, open source, visualization, computer vision, medical imaging, data publishing, quality software process solutions |
is listed by: Connected Researchers is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: VTK CISG Registration Toolkit is related to: Connected Researchers is parent organization of: Midas Platform is parent organization of: ParaView is parent organization of: VolView is parent organization of: VTK |
PASCAL network of excellence ; Max-Planck Society ; Fraunhofer Society |
Open source | SCR_013989 | SciCrunch Registry | 2026-11-07 12:03:52 | 12 | |||||||||
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University of Delaware Center for Human Research Coordination Core Facility Resource Report Resource Website |
University of Delaware Center for Human Research Coordination Core Facility (RRID:SCR_029059) | access service resource, core facility, service resource | Core is focused on supporting researchers with participant recruitment, both on a small and large scale ensuring participant recruitment reflects the population and community across Delaware and neighboring Maryland and Pennsylvania communities. CHRC coordinates research subject logistics such as screening, scheduling, transportation, and reimbursement. CHRC also provides the university community with data management education, database set-up, repository maintenance, hardening and security. CHRC supports REDCap across UD and assists researchers in building and maintaining participant registries. | ABRF, participant recruitment, coordinate research subject logistics, data management education, database set-up, repository maintenance, |
is listed by: ABRF CoreMarketplace has parent organization: University of Delaware; Delaware; USA |
ABRF_6213 | https://coremarketplace.org/?FacilityID=6213&citation=1 | SCR_029059 | SciCrunch Registry | UD - Center for Human Research Coordination | 2026-11-07 12:07:32 | 0 | ||||||||
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NeuroDevTime Resource Report Resource Website 1+ mentions |
NeuroDevTime (RRID:SCR_026651) | software resource, source code | Software code for age prediction in fetal brain and organoid single cell data. This repository contains cell type agnostic models to predict the developmental age of brain cell types from single cell RNAseq data. Code contains 4 jupyter notebooks, which apply pretrained models to predict neurodevelopmental age of cell types in new human fetal brain and organoid datasets. | age prediction, fetal brain, organoid single cell data, developmental age of brain cell types, single cell RNAseq data, | DOI:10.1101/2025.02.24.639936v1.full | Free, Available for download, Freely available | SCR_026651 | SciCrunch Registry | 2026-11-07 12:06:39 | 2 | ||||||||||
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ProGlycProt Resource Report Resource Website 1+ mentions |
ProGlycProt (RRID:SCR_000622) | ProGlycProt | data or information resource, database | Manually curated, comprehensive repository of experimentally characterized bacterial glycoproteins and archaeal glycoproteins, generated from an exhaustive literature search. This is the focused effort to provide concise relevant information derived from rapidly expanding literature on prokaryotic glycoproteins, their glycosylating enzyme(s), glycosylation linked genes, and genomic context thereof, in a cross-referenced manner. The database is arranged into two sections namely, ProCGP and ProUGP. ProCGP is the main section containing characterized prokaryotic glycoproteins, defined as entries with at least one experimentally known glycosylated residue (glycosite). Whereas, ProUGP is the supplementary section, presenting uncharacterized prokaryotic glycoproteins, defined as entries with experimentally identified glycosylation but unidentified glycosites. The ProGlycProt has been developed with to aid and advance the emerging scientific interests in understanding the mechanisms, implications, and novelties of protein glycosylation in prokaryotes that include many pathogenic as well as economically important bacterial species. The website supports a dedicated structure gallery of homology models and crystal structures of characterized glycoproteins in addition to two new tools developed in view of emerging information about prokaryotic sequons (conserved sequences of amino acids around glycosites) that are never or rarely seen in eukaryotic glycoproteins. ProGlycProt provides an extensive compilation of experimentally identified glycosites (334) and glycoproteins (340) of prokaryotes that could serve as an information resource for research and technology applications in glycobiology. A general data update policy is once in three months. Existing entries are updated in real-time. | glycoprotein, glycosite, glycosylation, coding gene, protein, glycosylation type, attached glycan, oligosaccharyl transferase, glycosyl transferase, glycobiology, glycosylating enzyme, glycosylation linked gene, crystal structure, homology, homology model, blast, predict, bacteria, archaea, image collection, structure, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Institute of Microbial Technology; Chandigarh; India |
Institute of Microbial Technology; Chandigarh; India OLP0063; Council of Scientific and Industrial Research; New Delhi; India SIP10AA |
PMID:22039152 | nlx_151583, biotools:proglycprot | https://bio.tools/proglycprot | SCR_000622 | SciCrunch Registry | Prokaryotic Glycoproteins, ProGlycProt - A Repository of Experimentally Characterized GlycoProteins of Prokaryotes | 2026-11-07 12:02:03 | 1 | |||||
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F1000 Posters Resource Report Resource Website 1+ mentions |
F1000 Posters (RRID:SCR_006503) | F1000 Posters, F1000Posters | data or information resource, narrative resource, service resource, storage service resource | An open access repository of conference posters from across the life sciences and medicine. It provides a permanent, structured environment for the deposition of posters as well as a trustworthy venue for ongoing discussion and development of the information being presented. You can browse posters by Topic or Section or by conference. Please note that most posters on this site present work that is preliminary in nature and has not been peer reviewed. The most interesting posters are selected for evaluation by our expert Faculty and you will receive ideas and feedback. Widen your audience ����?? top performing posters receive 800+ views in a month! | poster, slide |
is used by: NIF Data Federation has parent organization: F1000: Faculty of 1000 Post-Publication Peer Review |
Creative Commons Attribution-NonCommercial License | nlx_20701 | http://posters.f1000.com/, http://posters.f1000.com/posters | SCR_006503 | SciCrunch Registry | Faculty of 1000 Posters, F1000 Posters: The Open Poster Repository for Biology and Medicine | 2026-11-07 12:00:33 | 1 | ||||||
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Accelerated Cure Project for Multiple Sclerosis Resource Report Resource Website |
Accelerated Cure Project for Multiple Sclerosis (RRID:SCR_004743) | ACP | data or information resource, portal, project portal | A national nonprofit organization dedicated to accelerating the cure of MS by facilitating research that determines the causes and mechanisms of MS. Our main effort is the creation of a large-scale, multidisciplinary MS Repository of blood samples and data from people with MS and matched controls. We make these samples available to researchers investigating the causes of MS and other demyelinating diseases. In exchange for access to the repository, researchers agree to return the data they generate from the samples so that results from disparate experiments can be combined. We are also developing a Cure Map to establish and document what is known and what is not known about the causes of MS. From the Cure Map, Accelerated Cure Project will facilitate the research most likely to reveal the causes of MS in the shortest time through use of our MS Repository. | multiple sclerosis |
is parent organization of: Multiple Sclerosis Discovery Forum is parent organization of: Accelerated Cure Project MS Repository is parent organization of: Guthy-Jackson Repository for Neuromyelitis Optica |
Multiple Sclerosis, Demyelinating disease | grid.468148.7, nlx_75004 | https://ror.org/04k4dpz50 | SCR_004743 | SciCrunch Registry | Accelerated Cure Project | 2026-11-07 12:01:29 | 0 | ||||||
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NCBI Assembly Archive Viewer Resource Report Resource Website 100+ mentions |
NCBI Assembly Archive Viewer (RRID:SCR_012917) | NCBI Assembly Archive Viewer | data or information resource, data repository, data set, service resource, storage service resource | Database providing information on structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data. The Archive links the raw sequence information found in the Trace Archive with assembly information found in publicly available sequence repositories (GenBank/EMBL/DDBJ). | sequence alignment, sequence chromatogram, assembly, virus |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is related to: GenBank is related to: Trace Archive is related to: DNA DataBank of Japan (DDBJ) is related to: European Nucleotide Archive (ENA) |
OMICS_00890, r3d100012688 | http://www.ncbi.nlm.nih.gov/assembly, https://doi.org/10.17616/R31NJMA8 | http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi | SCR_012917 | SciCrunch Registry | Assembly Archive Viewer, NCBI Assembly, Assembly | 2026-11-07 11:57:39 | 313 | ||||||
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Polar Geospatial Center Resource Report Resource Website |
Polar Geospatial Center (RRID:SCR_000402) | PGC | data or information resource, organization portal, portal | Portal as data resource, map repository, and GIS service provider for federally-funded scientists conducting research in the Arctic and Antarctic. The PGC holds an extensive collection of satellite imagery and aerial photography at varying resolutions. | arctic, antarctic, geospatial, polar, mapping, gis, remote sensing, cartography, map, image collection, satellite imagery, aerial photography |
is listed by: CINERGI has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
NSF | Free, Freely available | nlx_154743 | SCR_000402 | SciCrunch Registry | 2026-11-07 12:01:05 | 0 | |||||||
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Dat Project Resource Report Resource Website 1+ mentions |
Dat Project (RRID:SCR_015779) | community building portal, data or information resource, data repository, database, portal, protocol, service resource, storage service resource | Community portal for a distributed data sharing platform and open protocol for building apps. The Dat Project imagines a web of commons created by global communities on open and secure protocols. | data sharing, collaborative work | Knight Foundation ; Alfred P. Sloan Foundation |
Open Source, Freely available | SCR_015779 | SciCrunch Registry | The Dat Project, datproject.org, Dat Protocol, Dat | 2026-11-07 11:58:05 | 2 | |||||||||
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MassBank of North America Resource Report Resource Website 100+ mentions |
MassBank of North America (RRID:SCR_015536) | MoNA | data or information resource, database | Metadata-centric, auto-curating repository designed for storage and querying of mass spectral records. It contains metabolite mass spectra, metadata and associated compounds. | mass spectrometry, ms database, mass spectrometry database, mass spectral records, FASEB list | has parent organization: University of California at Davis; California; USA | Available for download, The scientific community can contribute to this resource | r3d100012318 | https://doi.org/10.17616/R3ND3Z | SCR_015536 | SciCrunch Registry | MassBank of North America (MoNA) | 2026-11-07 12:03:20 | 332 | ||||||
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Michigan Genomics Initiative Resource Report Resource Website 1+ mentions |
Michigan Genomics Initiative (RRID:SCR_023556) | MGI | biobank, data or information resource, material storage repository, portal, project portal, service resource, storage service resource | Collaborative research effort among physicians, researchers, and patients at the University of Michigan with goal of combining patient electronic health record data with corresponding genetic data to gain novel biomedical insights. Biobank linking genotypes and electronic clinical records in Michigan Medicine patients. MGI participants agree to provide study team with access to EHR data for clinical information and biospecimen including blood or saliva. | combining patient electronic health record data, genetic data, genotypes, electronic clinical records | has parent organization: Michigan State University; Michigan; USA | PMID:36819667 | Restricted | SCR_023556 | SciCrunch Registry | 2026-11-07 12:01:08 | 6 | ||||||||
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CEPALSTAT Resource Report Resource Website |
CEPALSTAT (RRID:SCR_014999) | CEPALSTAT | data or information resource, data set, knowledge environment resource, portal | Data repository for statistical information of Latin America and the Caribbean countries collected, systematized and published by CEPAL. CEPALSTAT provides access to statistics and indicators produced by separate ECLAC Divisions which can be used for socio-economic and environmental analysis, as well as various decision-making processes related to Central and South America. Users can export data and cross-tabulate indicators to produce tables combining data from different series, countries and/or periods. | latin america, caribbean, south america, central america, socio-economic, data repository, statistical information, indicator, demographic analysis |
has parent organization: Economic Commission for Latin America and the Caribbean is hosted by: Economic Commission for Latin America and the Caribbean |
United Nations | Public, Free | SCR_014999 | SciCrunch Registry | CEPALSTAT - Bases de Datos y Publicaciones Estadisticas | 2026-11-07 12:00:20 | 0 | |||||||
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OneLab Resource Report Resource Website 1+ mentions |
OneLab (RRID:SCR_005545) | OneLab | community building portal, data or information resource, data repository, portal, service resource, storage service resource |
THIS RESOURCE IS NO LONGER IN SERVICE, documented August 24, 2017. Platform to enable dissemination of scientific findings, foster open peer commentary and promote collaboration among the research community. Widespread participation in OneLab will increase the quality, transparency and reproducibility of data thus accelerating the pace of scientific discoveries. The result will be a streamlined process from the bench to the clinic with tremendous benefits for the well-being of the general public. OneLab is a private professional network that mirrors the hierarchy of real world research laboratories. Users are designated as either principal investigators (PI) or lab members. PIs can invite lab members to join and data posted by lab members cannot be shared without PI approval. In this way the PI retains FULL CONTROL over the dissemination of scientific content thus safeguarding the primacy of authorship. This professional network will serve as a backdrop for sharing scientific findings, promote collaborations, and provide a basis for open peer commentary. Semantic Search of Structured Content OneLab implements a powerful search functionality that is based on structured content. Users describe their Single Figure Posts (SFPs) using defined fields such as model organism, genes, proteins and assay. This additional layer of structure provides the basis for a smarter and more accurate search engine that understands searcher intent and therefore generates more relevant results. Structured content allows OneLab to go one step further by offering recommendations based on similarities that might not be intuitive, thus increasing potential collaborations among scientists., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. |
data sharing, semantics, collaboration, down syndrome | has parent organization: University of California at San Diego; California; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144637 | SCR_005545 | SciCrunch Registry | OneLab - accelerating discoveries, One Lab | 2026-11-07 11:55:58 | 4 | |||||||
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UCSD Digital Collections Resource Report Resource Website |
UCSD Digital Collections (RRID:SCR_010221) | data repository, service resource, storage service resource | A discovery interface of digital objects, including documents, photographs, audio, video, and data sets, which reflect a range of materials collected, managed, and preserved by the UCSD Library to support teaching, learning and research. Content has been drawn from across the Library collections with strengths in the areas of Baja California, Melanesia, Oceanography, and UC San Diego history. Access to more content will increase over time. Items have been digitized from the original primary sources in our collections, and recently the Library began to partner with UC San Diego researchers on campus to make research data more readily available. The Digital Collections website gathers data into two broad categories of content: Library Digital Collections contains digitized versions of selected collections covering topics such as art, film, music, history and anthropology. | documents, photographs, audio, video, data sets | has parent organization: University of California at San Diego; California; USA | nlx_156730, r3d100011577 | https://doi.org/10.17616/R3V05F, https://doi.org/10.17616/R3V05F | http://ucsd.edu/dc/ | SCR_010221 | SciCrunch Registry | 2026-11-07 11:56:57 | 0 |
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