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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Genesis Resource Report Resource Website 1000+ mentions |
Genesis (RRID:SCR_015775) | data visualization software, software application, data processing software, software resource, data analysis software | Software for cluster analysis of microarray data. Genesis is a platform independent Java package of tools to simultaneously visualize and analyze a whole set of gene expression experiments. | cluster analysis, microarray data, java, gene expression, visualization, analysis, bio.tools |
is listed by: Debian is listed by: bio.tools is listed by: SoftCite |
PMID:11836235 | Free for academic use, Free for non-profits, Available for download, Runs on Windows, Runs on Mac OS, Runs on Linux | biotools:genesis_microarray | https://bio.tools/genesis_microarray | SCR_015775 | Genesis: Cluster analysis of microarray data | 2026-08-12 10:51:15 | 1029 | ||||||
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SeaGIS Resource Report Resource Website 10+ mentions |
SeaGIS (RRID:SCR_001101) | material resource, instrument supplier | Commercial company that specializes in measurement science software, hardware and services. Their software products include a range of photogrammetric camera calibration, measurement and event logging software. Their hardware products include calibration cubes and underwater camera housings. Services include design, construction and calibration of vision measurement systems, software development and GIS consulting. | software, hardware, measurement science, photogrammetric camera calibration, event logging, GIS consulting | nif-0000-31888 | SCR_001101 | 2026-08-12 10:48:20 | 14 | |||||||||||
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WuXi AppTec Laboratory Services Resource Report Resource Website 1+ mentions |
WuXi AppTec Laboratory Services (RRID:SCR_001217) | material resource, instrument supplier | A commercial organization for pharmaceutical, biopharmaceutical, and medical device open-access capability and technology platform with global operations. | commercial, pharmaceutical, biopharmaceutical, medical device, open access, open access capability, open access technology platform | Commercial | nlx_30524 | SCR_001217 | 2026-08-12 10:48:21 | 3 | ||||||||||
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BD FACSDiva Software Resource Report Resource Website 5000+ mentions |
BD FACSDiva Software (RRID:SCR_001456) | BD FACSDiva Software | commercial organization, software resource | A collection of tools for flow cytometer and application setup, data acquisition, and data analysis that help streamline flow cytometry workflows. It provides features to help users integrate flow systems into new application areas, including index sorting for stem cell and single-cell applications, as well as automation protocols for high-throughput and robotic laboratories. | flow cytometry, windows |
is used by: BD Biosciences: LSRFortessa X-20 Cell Analyzer has parent organization: BD Biosciences |
Free, Freely Available | SciRes_000115 | http://www.bdbiosciences.com/instruments/software/facsdiva/index.jsp | SCR_001456 | 2026-08-12 10:48:24 | 8327 | |||||||
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CodonCodes TraceViewer Resource Report Resource Website 1+ mentions |
CodonCodes TraceViewer (RRID:SCR_002304) | TraceViewer | commercial organization, software resource | A Java program that allows you to see, print, and edit DNA sequencing traces. | windows, dna sequencing trace, dna, sequencing, trace | is listed by: OMICtools | Free for academic use | OMICS_01822 | SCR_002304 | CodonCode''s TraceViewer | 2026-08-12 10:48:34 | 1 | |||||||
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Immundiagnostik Resource Report Resource Website 10+ mentions |
Immundiagnostik (RRID:SCR_001977) | material resource, instrument supplier | Commercial company that develops and provides laboratory diagnostics and other medical research products. | antibody, diagnostic, medical, research | nlx_152383 | SCR_001977 | Immundiagnostik AG | 2026-08-12 10:48:30 | 31 | ||||||||||
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Amorphium Resource Report Resource Website 1+ mentions |
Amorphium (RRID:SCR_002062) | Amorphium | commercial organization, software resource | Graphics software for a real-time approach to creating 3D graphics that offers a variety of intuitive, powerful design tools to create your 3D masterpiece. The graphics engine allows for a completely interactive environment, where all operations occur on solid objects in real time. A rendering engine allows you to produce stunning 3D imagery at virtually any resolution for Web, print, digital video, and film. Advanced capabilities include Radiosity rendering for photo-realistic scenes, Raytracing for true-to-life surface reflections and refractions, as well as variable smoke and lighting effects. | 3d software, graphics software, graphics, modeling, painting, animation, rendering, design, vector-based 3d | THIS RESOURCE IS NO LONGER IN SERVICE | SciRes_000164 | http://download.cnet.com/Amorphium-3-0/3000-6677_4-33263.html | SCR_002062 | Amorphium 3, Amorphium 3.0 | 2026-08-12 10:48:31 | 1 | |||||||
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Laser Microbeam and Medical Program Resource Report Resource Website 1+ mentions |
Laser Microbeam and Medical Program (RRID:SCR_001409) | LAMMP | training resource, biomedical technology research center | Biomedical technology research center dedicated to the use of lasers and optics in biology and medicine with activities in technological research and development, collaborative research, service, training, and dissemination. One of the primary goals of LAMMP is to facilitate translational research by rapidly moving basic science and technology discoveries from blackboard to benchtop to bedside. This is accomplished by combining state of the art optical technologies with specialized resource facilities for cell and tissue engineering, histopathology, pre-clinical animal models, and clinical care. The resource center has been organized into 3 cores: * Microscopy and Microbeam Technologies (MMT) for high-resolution functional imaging and manipulation of living cells and tissues * Medical Translational Technologies (MTT) for non- and minimally-invasive monitoring, treating, and imaging pre-clinical animal models and human subjects, and * Virtual Photonics Technologies (VPT) for developing computational models and methods that advance the performance of biophotonic technologies, and enhance the information content derived from optical measurements. LAMMP cores contain complementary technologies that are capable of quantitatively characterizing, imaging, and perturbing structure and biochemical function in cells and tissues with scalable resolution and depth sensitivity ranging from micrometers to centimeters. | laser, optics, biology, medicine, imaging, microscopy, microbeam, photonics, computational model, cell, tissue | has parent organization: University of California at Irvine; California; USA | NIBIB P41EB015890 | Free, Freely Available | nlx_152631 | http://lammp.bli.uci.edu/ | SCR_001409 | 2026-08-12 10:48:23 | 4 | ||||||
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HALT PKD Resource Report Resource Website 1+ mentions |
HALT PKD (RRID:SCR_001529) | HALT PKD, HALT-PKD | resource, clinical trial | Consortium established to design and implement clinical trials of treatments that might slow the progressive loss of renal function in Polycystic Kidney Disease (PKD). Two multicenter randomized, double-blind, placebo controlled clinical trials are running concurrently to study the efficacy of renin-angiotensin-aldosterone system blockade on the progression of cystic disease (kidney volume) and on the decline in renal function in autosomal dominant polycystic kidney disease (ADPKD). Study A is to study whether intensive ACE-I/ARB blockade decrease the progression of cystic disease compared to ACE-I monotherapy patients with early disease, relatively preserved renal function, and high-normal BP or hypertension. Study B is to study whether intensive ACE-I/ARB blockade as compared to ACE-I monotherapy slow the decline in kidney function, end-stage of renal disease, or death in the setting of standard blood pressure control in hypertensive patients with moderately advanced disease. | treatment, renal function, lisinopril, placebo, telmisartan, male, female, adolescent, adult human |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
Polycystic kidney disease, Autosomal dominant polycystic kidney disease | NIDDK 5U01DK062408 | Free, Freely available | nlx_152832 | https://www.niddkrepository.org/studies/halt-pkd/ | http://www.pkd.wustl.edu/pkdtn/ | SCR_001529 | Polycystic Kidney Disease-Treatment Network | 2026-08-12 10:48:25 | 1 | |||
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NITRC Computational Environment Resource Report Resource Website 1+ mentions |
NITRC Computational Environment (RRID:SCR_002171) | NITRC-CE | computational hosting, service resource | An on-demand, cloud based computational virtual machine pre-installed with popular NITRC neuroimaging tools built using NeuroDebian. For a listing of current NITRC-CE packages visit: http://www.nitrc.org/ce-packages. You can also use the "public Amazon Machine Interface (AMI)" to conduct your analyses on the Amazon EC2 platform. | image analysis software, neuroimaging, neuroimaging tool |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: neurodebian is related to: NITRC Enhanced Services has parent organization: Amazon Web Services |
Free, Freely available | nlx_155889 | http://www.nitrc.org/ce-marketplace | SCR_002171 | NITRC Computational Environment in Amazon Marketplace | 2026-08-12 10:48:32 | 1 | ||||||
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Clinical Islet Transplantation Study Resource Report Resource Website 1+ mentions |
Clinical Islet Transplantation Study (RRID:SCR_001515) | CIT Study | resource, clinical trial | Network of centers to conduct studies of islet transplantation in patients with type 1 diabetes to improve the safety and long-term success of methods for transplanting islets. It is the aim of this trial to improve methods of isolating islets, to improve techniques for the administering those transplanted islets; and to develop approaches to minimize the toxic effects of immunosuppressive drugs required for transplantation. | islet transplantation, islet, insulin, beta cell, pancreas, autoimmune, clinical | is listed by: NIDDK Information Network (dkNET) | Type 1 diabetes, Diabetes | NIDDK U01DK070431 | Free, Freely available | nlx_152840 | SCR_001515 | Clinical Islet Transplantation Trial, Islet Transplantation Trials for Type 1 Diabetes | 2026-08-12 10:48:24 | 5 | |||||
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CASY Cell Counter and Analyser System Model TT Resource Report Resource Website 1+ mentions |
CASY Cell Counter and Analyser System Model TT (RRID:SCR_002080) | CASY Model TT | material resource, instrument supplier | Tool for the qualitative and quantitative assessment of cell cultures including standardized cell counting methods, viability checks, aggregation correction, volumetric measurement with high measuring range dynamics. It enables to create optimal settings for measuring certain cell population numbers (based on size and gating strategies). | cell culture, cell counter, measurement, cell | Free, Freely Available | SciRes_000160 | SCR_002080 | CASY Cell Counter + Analyser System Model TT, CasyTon Cell Counter and Analyser System | 2026-08-12 10:48:31 | 4 | ||||||||
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Radiological Research Accelerator Facility Resource Report Resource Website 1+ mentions |
Radiological Research Accelerator Facility (RRID:SCR_001425) | RARAF | service resource, training resource, access service resource, biomedical technology research center | Biomedical technology research center dedicated for radiobiological research with available ionizing radiations such as protons, alpha particles, and neutrons. RARAF is well-established and highly user-friendly. The focus of RARAF is the development of high-throughput single-cell/single-particle microbeams, which can deliver defined amounts of ionizing radiation into individual cells with a spatial resolution of a few microns or better. The ability of a microbeam to put double strand break damage at any specific known location in a given cell has allowed new approaches to the study of damage signaling. | radiobiological, ionizing radiation, proton, alpha particle, neutron, radiation, microbeam, irradiator, accelerator, ion, x-ray, cell | has parent organization: Columbia University; New York; USA | NIBIB P41 EB002033 | Free, Freely Available | nlx_152647 | SCR_001425 | Columbia University Radiological Research Accelerator Facility | 2026-08-12 10:48:23 | 1 | ||||||
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Time-resolved and time-scale adaptive measures of spike train synchrony Resource Report Resource Website 1+ mentions |
Time-resolved and time-scale adaptive measures of spike train synchrony (RRID:SCR_001667) | Time-resolved and time-scale adaptive measures of spike train synchrony | software resource, source code | Source code that allows you to calculate the different measures used in Kreuz T, Chicharro D, Greschner M, Andrzejak RG (2011): Time-resolved and time-scale adaptive measures of spike train synchrony, http://www.sciencedirect.com/science/article/pii/S0165027010006564. Journal of Neuroscience Methods,195, 92-106 & Kreuz T, Chicharro D, Andrzejak RG, Haas JS, and Abarbanel HDI (2009) Measuring multiple spike train synchrony. Journal of Neuroscience Methods 183:287-299 http://www.sciencedirect.com/science/article/pii/S0165027009003616 | synchrony, spike train, time series analysis, synchronization, clustering, neuronal coding | has parent organization: Pompeu Fabra University; Barcelona; Spain | Marie Curie Individual Outgoing Fellowship ; Spanish Ministry of Education and Science BFU2007-61710; European Social Fund 2008FI-B 00460 |
PMID:21129402 PMID:19591867 |
Free, Freely Available | nlx_153991 | SCR_001667 | 2026-08-12 10:48:27 | 1 | ||||||
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Center for In Vivo Microscopy Resource Report Resource Website 10+ mentions |
Center for In Vivo Microscopy (RRID:SCR_001426) | CIVM | training resource, biomedical technology research center | Biomedical technology research center dedicated to the development of novel imaging methods for the basic scientist and the application of the methods to important biomedical questions. The CIVM has played a major role in the development of magnetic resonance microscopy with specialized MR imaging systems capable of imaging at more than 500,000x higher resolution than is common in the clinical domain. The CIVM was the first to demonstrate MR images using hyperpolarized 3He which has been moved from mouse to man with recent clinical trials performed at Duke in collaboration with GE. More recently the CIVM has developed the molecular imaging workbench---a system dedicated to multimodality cardiopulmonary imaging in the rodent. Their collaborators are employing these unique imaging systems in an extraordinary range of mouse and rat models of neurologic disease, cardiopulmonary disease and cancer to illuminate the underlying biology and explore new therapies. | imaging, magnetic resonance microscopy, magnetic resonance imaging, clinical, mri, ct, x-ray, ultrasound, confocal, optical, spect | has parent organization: Duke University; North Carolina; USA | Cardiopulmonary disease, Cancer, Neurological disease | NIBIB 4P41EB015897-27 | Free, Freely Available | nlx_152650 | SCR_001426 | Duke Center for In Vivo Microscopy | 2026-08-12 10:48:23 | 10 | |||||
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RESBIO Resource Report Resource Website 1+ mentions |
RESBIO (RRID:SCR_001424) | RESBIO | training resource, biomedical technology research center | Biomedical technology research center that works to develop integrated tools and technologies that advance the discovery of polymeric biomaterials for regenerative medicine, the delivery of biological agents, and the next generation of medical implants. To achieve its mission, RESBIO's research is focused on the development of combinatorial and computational approaches to biomaterials design and optimization. Within this framework, RESBIO employs and uses: * Advanced multi-photon confocal laser microscopy to explore, understand, and control the response of cells in contact with artificial surfaces * Electron microscopy techniques to study the effect of nano-scale surface morphological features on cell behavior RESBIO research emphasizes the integration of a strong synthetic effort to create new biomaterial candidates with the development of rapid screening techniques for key material and biological properties relevant to the performance of a biomaterial in a given medical application. | polymeric biomaterial, regenerative medicine, biological agent, medical implant, biomaterial, design, optimization, delivery, confocal laser microscopy, electron microscopy, cell | has parent organization: Rutgers University; New Jersey; USA | NIBIB 4P41EB001046-14 | Free, Freely Available | nlx_152646 | http://www.njbiomaterials.org/web/index.php?p=resbio | SCR_001424 | Polymeric Biomaterials Resource, Integrated Technologies for Polymeric Biomaterials | 2026-08-12 10:48:23 | 1 | |||||
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Visual Molecular Dynamics Resource Report Resource Website 100+ mentions |
Visual Molecular Dynamics (RRID:SCR_001820) | VMD | software resource, source code | A molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS X, Unix, or Windows, is distributed free of charge, and includes source code. | standalone software, mac os x, unix, virtual machine, windows, c++ |
is listed by: OMICtools has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA |
NIGMS | PMID:8744570 | Free, Freely available | OMICS_03804 | SCR_001820 | 2026-08-12 10:48:28 | 383 | ||||||
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Center for Magnetic Resonance and Optical Imaging Resource Report Resource Website 1+ mentions |
Center for Magnetic Resonance and Optical Imaging (RRID:SCR_001428) | CMROI | training resource, biomedical technology research center | Biomedical technology research center dedicated to the development and application of innovative, novel magnetic resonance and optical imaging techniques. The facility's core sections provide research and computing resources for numerous user, collaborative, and training projects. The focus of this resource is on developing instrumentation, methodologies, and data analysis techniques for the quantitative assessment of functional, structural, and metabolic parameters in humans with the use of multinuclear magnetic resonance, novel spectral, perfusion, functional, and optical imaging techniques. These technological developments are driven by collaboration with scientists from within and outside University of Pennsylvania, the primary institution. Specifically, the Resource is focused on the development of quantitative, noninvasive MR and optical imaging based biomarkers for studying tissue metabolism and function, with an eye towards clinical translation through early diagnosis. The Center also provides support in the development and evaluation of new therapies in a variety of diseases. | magnetic resonance imaging, optical imaging, multinuclear magnetic resonance | has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA | NIBIB P41 EB015893 | Free, Freely Available | nlx_152652 | http://cmroi.med.upenn.edu/ | SCR_001428 | 2026-08-12 10:48:23 | 1 | ||||||
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Reliable detection of directional couplings using rank statistics Resource Report Resource Website 1+ mentions |
Reliable detection of directional couplings using rank statistics (RRID:SCR_001662) | Reliable detection of directional couplings using rank statistics | software resource, source code | Source code that allows you to calculate the different measures used in Chicharro D, Andrzejak RG (2009): Reliable detection of directional couplings using rank statistics. Physical Review E, 80, 026217. | directional coupling, time series, rank statistics, normalization, experimental signal | has parent organization: Pompeu Fabra University; Barcelona; Spain | PMID:19792241 | Free, Freely Available | nlx_153987 | SCR_001662 | 2026-08-12 10:48:27 | 1 | |||||||
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RiVuR Resource Report Resource Website 1+ mentions |
RiVuR (RRID:SCR_001539) | RIVUR | resource, clinical trial | Multicenter, randomized, double-blind, placebo-controlled trial is designed to determine whether daily antimicrobial prophylaxis is superior to placebo in preventing recurrence of urinary tract infection (UTI) in children with vesicoureteral reflux (VUR). The basic eligibility criteria are: (1) age at randomization of at least 2 months, but less than 6 years, (2) a diagnosed first febrile or symptomatic UTI within 42 days prior to randomization that was appropriately treated, and (3) presence of Grade I-IV VUR based on voiding cystourethrogram (VCUG). Patients will be randomly assigned to treatment for 2 years with daily antimicrobial prophylaxis (trimethoprim-sulfamethoxazole) or placebo. The study is designed to recruit 600 children (approximately 300 in each treatment group) over an 18-24 month period. The primary endpoint is recurrence of UTI. In addition, patients will be evaluated for secondary endpoints related to renal scarring and antimicrobial resistance. Scarring will be determined based on renal scintigraphy by 99mTc dimercaptosuccinic (DMSA) scan. Quality of life, compliance, safety parameters, utilization of health resources, and change in VUR will be assessed periodically throughout the study. | child, antimicrobial prophylaxis, placebo, antibiotic, renal scarring, pediatric, trimethoprim-sulfamethoxazole, intervention, kidney, antibiotic resistance, young human, infant, bibliography, clinical, trimethoprim, sulfamethoxazole |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
Vesico-ureteral reflux, Urinary tract infection | NIDDK | PMID:19570724 PMID:19018048 PMID:18076937 PMID:19018047 PMID:19086141 |
Free, Freely available | nlx_152848 | http://www.cscc.unc.edu/rivur/ | SCR_001539 | Randomized Intervention for Children With Vesicoureteral Reflux (RIVUR), Randomized Intervention for Children with Vesicoureteral Reflux, Randomized Intervention for Vesicoureteral Reflux | 2026-08-12 10:48:25 | 1 |
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