Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Funding Agency:nibib (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

172 Results - per page

Show More Columns | Download 172 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Non-Rigid Image Registration Evaluation Project
 
Resource Report
Resource Website
1+ mentions
Non-Rigid Image Registration Evaluation Project (RRID:SCR_002505) NIREP standard specification, database, narrative resource, data or information resource, software resource Project to develop software tools and provide shared image validation databases for rigorous testing of non-rigid image registration algorithms. NIREP will extend the scope of prior validation projects by developing evaluation criteria and metrics using large image populations, using richly annotated image databases, using computer simulated data, and increasing the number and types of evaluation criteria. The goal of this project is to establish, maintain, and endorse a standardized set of relevant benchmarks and metrics for performance evaluation of nonrigid image registration algorithms. Furthermore, these standards will be incorporated into an exportable computer program to automatically evaluate the registration accuracy of nonrigid image registration algorithms. magnetic resonance, registration software is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of Iowa; Iowa; USA
NIBIB R33 EB004126 THIS RESOURCE IS NO LONGER IN SERVICE nlx_155904 http://www.nitrc.org/projects/nirep SCR_002505 Non-Rigid Image Registration Evaluation Project, Non-Rigid Image Registration Evaluation Project (NIREP) 2026-08-03 09:31:52 7
FFT Library
 
Resource Report
Resource Website
FFT Library (RRID:SCR_002698) FFT Library image processing software, software toolkit, software application, data processing software, software library, software resource Java library used for the execution of discrete Fourier transforms in 1-D, 2-D and 3-D through the implementation of Fast Fourier Transform (FFT) algorithms. * The FFT library has been written in Java for portability across different platforms, integrated into a single jar file for easy implementation. * The FFT library provides forward and backward fast Fourier transforms in 1-D, 2-D and 3-D with an easy-to-use manner. * The FFT requires the length equal to a number with an integer power of two. This library automatically examines the input data and detects the length to prevent improper execution. fourier transform, fast fourier transform, magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Biositemaps
has parent organization: Laboratory of Neuro Imaging
NIBIB 9P41EB015922-15;
NCRR 2-P41-RR-013642-15;
NCRR U54 RR021813
PMID:24822428 Free, Freely available nif-0000-23324 http://www.nitrc.org/projects/fft http://www.loni.ucla.edu/Software/FFT SCR_002698 Fast Fourier Transform JavaLibrary, FFT Java library, Fast Fourier Transform Library, Fast Fourier Transform (FFT) JavaLibrary 2026-08-03 09:31:58 0
Automated Fiber Quantification in Python
 
Resource Report
Resource Website
10+ mentions
Automated Fiber Quantification in Python (RRID:SCR_023366) pyAFQ software toolkit, software resource Software package focused on automated delineation of major fiber tracts in individual human brains, and quantification of tissue properties within the tracts.Software for automated processing and analysis of diffusion MRI data. Automates tractometry. Automates tractometry, automated delineation of major fiber tracts, individual human brains, quantification of tissue properties, tissue properties within fiber tracts, diffusion MRI data, NIMH 1RF1MH121868;
The BRAIN Initiative ;
Gordon and Betty Moore Foundation ;
Alfred P. Sloan Foundation ;
NIBIB R01EB027585;
NSF 1551330
PMID:35079748 Free, Available for download, Freely available SCR_023366 2026-08-02 09:08:45 12
Advanced Neuroscience Imaging Research Laboratory Software Packages
 
Resource Report
Resource Website
10+ mentions
Advanced Neuroscience Imaging Research Laboratory Software Packages (RRID:SCR_002926) ANSIR Software software toolkit, software resource Research group based in the Department of Radiology of Wake Forest University School of Medicine devoted to the application of novel image analysis methods to research studies. The ANSIR lab also maintains a fully-automated functional and structural image processing pipeline supporting the image storage and analysis needs of a variety of scientists and imaging studies at Wake Forest. Software packages and toolkits are currently available for download from the ANSIR Laboratory, including: WFU Biological Parametric Mapping Toolbox, WFU_PickAtlas, and Adaptive Staircase Procedure for E-Prime. multimodal, image, analysis, biological, parametric, mapping, voxel, linear, model, regressor, software, matlab, visualization, statistical, inference, in vivo, brain imaging, brain has parent organization: Wake Forest School of Medicine; North Carolina; USA NIBIB R01EB004673;
NIBIB 1R03EB008670
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-30033 SCR_002926 Advanced Neuroscience Imaging Research Software, ANSIR Laboratory Software Packages 2026-08-02 09:03:48 37
DeepNeuro
 
Resource Report
Resource Website
1+ mentions
DeepNeuro (RRID:SCR_016911) software toolkit, software resource Software Python package for neuroimaging data. Framework to design and train neural network architectures. Used in medical imaging community to ensure consistent performance of networks across variable users, institutions, and scanners. Design and train neural network architectures, medical imaging, neuroimaging data, neuroimaging uses: Python Programming Language
is related to: Massachusetts General Hospital
has parent organization: Harvard University; Cambridge; United States
NIDA T90 DA022759;
NIDA R90 DA023427;
NIH Blueprint for Neuroscience Research ;
NIBI ;
NIBIB T32 EB1680;
NCI U01 CA154601;
NCI U24 CA180927;
NCI U24 CA180918;
NIBIB P41 EB015896
PMID:32578020 Free, Available for download, Freely available SCR_016911 2026-08-02 09:07:34 2
ANTS - Advanced Normalization ToolS
 
Resource Report
Resource Website
100+ mentions
ANTS - Advanced Normalization ToolS (RRID:SCR_004757) ANTS, ANTsX software application, data processing software, segmentation software, image analysis software, software resource, registration software Software package designed to enable researchers with advanced tools for brain and image mapping. Many of the ANTS registration tools are diffeomorphic*, but deformation (elastic and BSpline) transformations are available. Unique components of ANTS include multivariate similarity metrics, landmark guidance, the ability to use label images to guide the mapping and both greedy and space-time optimal implementations of diffeomorphisms. The symmetric normalization (SyN) strategy is a part of the ANTS toolkit as is directly manipulated free form deformation (DMFFD). *Diffeomorphism: a differentiable map with differentiable inverse. In general, these maps are generated by integrating a time-dependent velocity field. ANTS Applications: * Gray matter morphometry based on the jacobian and/or cortical thickness. * Group and single-subject optimal templates. * Multivariate DT + T1 brain templates and group studies. * Longitudinal brain mapping -- special similarity metric options. * Neonatal and pediatric brain segmentation. * Pediatric brain mapping. * T1 brain mapping guided by tractography and connectivity. * Diffusion tensor registration based on scalar or connectivity data. * Brain mapping in the presence of lesions. * Lung and pulmonary tree registration. * User-guided hippocampus labeling, also of sub-fields. * Group studies and statistical analysis of cortical thickness, white matter volume, diffusion tensor-derived metrics such as fractional anisotropy and mean diffusion. algorithm, atlas application, morphology, segmentation, image registration, temporal transformation, child, pediatric, normalization is used by: CMIND PY
is used by: BICCN
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Debian
is related to: Segmentation of Hippocampus Subfields
is related to: ANTsR
has parent organization: University of Pennsylvania; Philadelphia; USA
NIBIB R01 EB006266 PMID:20851191
PMID:33907199
nlx_75959 http://www.nitrc.org/projects/ants, https://sources.debian.org/src/ants/, https://gist.github.com/ntustison/12a656a5fc2f6f9c4494c88dc09c5621 SCR_004757 Advanced Normalization Tools 2026-08-03 09:32:43 472
Protein Data Bank Markup Language
 
Resource Report
Resource Website
1+ mentions
Protein Data Bank Markup Language (RRID:SCR_005085) PDBML standard specification, interchange format, narrative resource, data or information resource, markup language Markup Language that provides a representation of PDB data in XML format. The description of this format is provided in XML schema of the PDB Exchange Data Dictionary. This schema is produced by direct translation of the mmCIF format PDB Exchange Data Dictionary Other data dictionaries used by the PDB have been electronically translated into XML/XSD schemas and these are also presented in the list below. * PDBML data files are provided in three forms: ** fully marked-up files, ** files without atom records ** files with a more space efficient encoding of atom records * Data files in PDBML format can be downloaded from the RCSB PDB website or by ftp. * Software tools for manipulating PDB data in XML format are available. xml is related to: RCSB PDB Software Tools
has parent organization: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
NSF ;
NIGMS ;
DOE ;
NLM ;
NCI ;
NCRR ;
NIBIB ;
NINDS
PMID:15509603 nlx_144096 SCR_005085 PDBML: Protein Data Bank Markup Language 2026-08-03 09:32:50 2
3D Slicer
 
Resource Report
Resource Website
1000+ mentions
3D Slicer (RRID:SCR_005619) Slicer software application, data processing software, image analysis software, software resource, data visualization software A free, open source software package for visualization and image analysis including registration, segmentation, and quantification of medical image data. Slicer provides a graphical user interface to a powerful set of tools so they can be used by end-user clinicians and researchers alike. 3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and Mac Os X. Slicer is based on VTK (http://public.kitware.com/vtk) and has a modular architecture for easy addition of new functionality. It uses an XML-based file format called MRML - Medical Reality Markup Language which can be used as an interchange format among medical imaging applications. Slicer is primarily written in C++ and Tcl. birn, diffusion, functional, na-mic (ncbc), nifti-1 support, registration, segmentation, visualization, volume, warping uses: 3DSlicerLupusLesionModule
uses: ShapePopulationViewer
uses: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
uses: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Biositemaps
is related to: Slicer3 Example Modules
is related to: Stereoscopic Atlas of Intrinsic Brain Networks
is related to: VMTK in 3D Slicer
is related to: Diffusion Tractography with Kalman Filter
is related to: Fast Nonlocal Means for MRI denoising
is related to: SpineSegmentation module for 3DSlicer
is related to: BioImage Suite
is related to: NA-MIC Kit
is related to: Hammer And WML Modules for 3D Slicer
is related to: ABC (Atlas Based Classification)
is related to: ARCTIC
is related to: Finsler tractography module for Slicer
is related to: GAMBIT
is related to: GPU based affine registration
is related to: GTRACT
is related to: LEAD-DBS
has parent organization: Harvard University; Cambridge; United States
is parent organization of: Level-set Segmentation for Slicer3
is parent organization of: Slicer3 Module Rician noise filter
has plug in: MultiXplore
works with: UManitoba - JHU Functionally Defined Human White Matter Atlas
works with: SlicerMorph
NIH ;
NCRR ;
NIBIB ;
NCI ;
US Army ;
Telemedicine and Advanced Technology Research Center
3D Slicer License nif-0000-00256 http://www.nitrc.org/projects/slicer SCR_005619 Slicer, 3D Slicer: A multi-platform free and open source software package for visualization and medical image computing, 3D Slicer, 3DSlicer 2026-08-03 09:32:54 2238
Fusion ICA Toolbox
 
Resource Report
Resource Website
10+ mentions
Fusion ICA Toolbox (RRID:SCR_003494) FIT software toolkit, software resource, software application, data processing software A MATLAB toolbox which implements the joint Independent Component Analysis (ICA), parallel ICA and CCA with joint ICA methods. It is used to to extract the shared information across modalities like fMRI, EEG, sMRI and SNP data. * Environment: Win32 (MS Windows), Gnome, KDE * Operating System: MacOS, Windows, Linux * Programming Language: MATLAB * Supported Data Format: ANALYZE, NIfTI-1 analysis, functional magnetic resonance imaging, cca, image, eeg, neuroimaging, matlab, smri, snp, mri, algorithm, reusable library, independent component analysis, principal component analysis is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Biositemaps
has parent organization: University of New Mexico; New Mexico; USA
NIBIB 1RO1EB005846;
NSF 0612076
GNU General Public License nif-0000-36743 http://www.nitrc.org/projects/fit SCR_003494 Fusion ICA Toolbox (FIT) 2026-08-03 09:32:16 13
Synapse Web Reconstruct
 
Resource Report
Resource Website
50+ mentions
Synapse Web Reconstruct (RRID:SCR_002716) Reconstruct image analysis software, software resource, software application, data processing software A Windows (Win32) software application for montaging, aligning, tracing, measuring, and reconstructing objects from serial microscopic section images. The software is designed for microscopy in which section resolution is much less than section thickness, such as transmitted electron microscopy (EM) where the resolution is a few nanometers while the section thickness is many tens of nanometers. Reconstruct can easily handle series with hundreds of very large, high-resolution section images. It facilitates image cropping, scaling and alignment. Multiple images can be placed side-by-side to make a montage of a section from a mosaic of images. The alignment of adjacent sections can be rapidly compared by either blending the two sections or by flickering between them. Sections can be moved while blended. Reconstruct aids in the calibration of image size. Images taken at different magnifications can be combined, calibrated and aligned. Tools for tracing and editing of objects on sections are provided. Objects can be surfaced from the traces and previewed in an OpenGL-based 3D scene window. The 3D scene can be saved as a bitmap or as a VRML file. electron microscopy, align, alignment, calibrate, image cropping, measure, microscopy, montage, reconstruct, scale, serial section image, trace, image, crop has parent organization: University of Texas at Austin; Texas; USA NICHD P30 HD18655;
NIBIB R01 EB 002170
Free, Available for download, Freely available nif-0000-23420 SCR_002716 2026-08-03 09:31:58 73
LONI Inspector
 
Resource Report
Resource Website
1+ mentions
LONI Inspector (RRID:SCR_004923) LONI Inspector software resource, software application, data processing software A Java application for reading, displaying, searching, comparing, and exporting metadata from medical image files: AFNI, ANALYZE, DICOM, ECAT, GE, Interfile, MINC, and NIFTI. analyze, dicom, java, minc, magnetic resonance, nifti, os independent, win32 (ms windows), workflow is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Laboratory of Neuro Imaging
NIBIB 9P41EB015922-15;
NCRR 2-P41-RR-013642-15
LONI Software License nlx_155785 http://www.nitrc.org/projects/inspector http://www.loni.ucla.edu/Software/LONI-Inspector SCR_004923 2026-08-03 09:32:48 3
Brain Computer Interface 2000 Software Package
 
Resource Report
Resource Website
100+ mentions
Brain Computer Interface 2000 Software Package (RRID:SCR_007346) software resource, software application, data processing software BCI2000 is a general-purpose system for brain-computer interface (BCI) and adaptive neurotechnology research. It can also be used for data acquisition, stimulus presentation, and brain monitoring applications. The mission of the BCI2000 project is to facilitate research and applications in the areas described. Their vision is that BCI2000 will become a widely used software tool for diverse areas of real-time biosignal processing. In order to achieve this vision, BCI2000 system is available for free for non-profit research and educational purposes. BCI2000 supports a variety of data acquisition systems, brain signals, and study/feedback paradigms. During operation, BCI2000 stores data in a common format (BCI2000 native or GDF), along with all relevant event markers and information about system configuration. BCI2000 also includes several tools for data import/conversion (e.g., a routine to load BCI2000 data files directly into Matlab) and export facilities into ASCII. BCI2000 also facilitates interactions with other software. For example, Matlab scripts can be executed in real-time from within BCI2000, or BCI2000 filters can be compiled to execute as stand-alone programs. Furthermore, a simple network-based interface allows for interactions with external programs written in any programming language. For example, a robotic arm application that is external to BCI2000 may be controlled in real time based on brain signals processed by BCI2000, or BCI2000 may use and store along with brain signals behavioral-based inputs such as eye-tracker coordinates. Because it is based on a framework whose services can support any BCI implementation, the use of BCI2000 provides maximum benefit to comprehensive research programs that operate multiple BCI2000 installations to collect data for a variety of studies. The most important benefits of the system in such situations are: - A Proven Solution - Facilitates Operation of Research Programs - Facilitates Deployment in Multiple Sites - Cross-Platform and Cross-Compiler Compatibility - Open Resource Sponsors: BCI2000 development is sponsored by NIH/NIBIB R01 and NIH/NINDS U24 grants. Keywords: General, Purpose, Systems, Brain, Computer, Interface, Research, Application, Brain, Diverse, Educational, Laboratory, Software, Network, Signals, Behavioral, Eye, Tracker, is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: National Institutes of Health
NIBIB R01 EB026439;
NINDS U24 NS109103;
NIBIB P41 EB018783
nif-0000-00251 http://www.nitrc.org/projects/bci2000, http://www.bci2000.org, https://www.neurotechcenter.org/software SCR_007346 BCI2000 2026-08-03 09:33:26 166
LONI Java Image I/O Plugins
 
Resource Report
Resource Website
LONI Java Image I/O Plugins (RRID:SCR_008277) software resource, software application, data processing software Decoders and encoders written in Java for the AFNI, ANALYZE, DICOM, ECAT, GE, MINC, NIFTI and other neuroimaging file formats.The plugins use Java Image I/O interfaces to read and write metadata and image data and can read and write AFNI, ANALYZE 7.5, DICOM, ECAT 7.2, GE 5.0, INTERFILE (including hrrt), MINC, NIFTI, and UCLA PACS file formats. All source code is provided and usage examples are included. plugin, MRI, software, visualization, data processing is related to: Laboratory of Neuro Imaging
has parent organization: University of Southern California; Los Angeles; USA
NIBIB 9P41EB015922-15;
NCRR 2-P41-RR-013642-15
Available for educational and research purposes only nif-0000-23320 SCR_008277 2026-08-03 09:33:45 0
Neuroscience Gateway
 
Resource Report
Resource Website
10+ mentions
Neuroscience Gateway (RRID:SCR_008915) NSG data or information resource, software resource, portal, project portal Web portal that allows free access to supercomputing resources for large scale modeling and data processing. Portal facilitates access and use of National Science Foundation (NSF) High Performance Computing (HPC) resources by neuroscientists. Large, scale, modeling, data, computing, neuroscience, neuron, BRAIN Initiative is recommended by: BRAIN Initiative
lists: ModelRun
is related to: XSEDE - Extreme Science and Engineering Discovery Environment
is related to: NEURON
is related to: GENESIS Neural Database and Modelers Workspace
has parent organization: San Diego Supercomputer Center
has parent organization: Neuroscience Information Framework
has parent organization: Yale School of Medicine; Connecticut; USA
NSF 1458840;
NSF 1458495;
BBSRC N005236;
NIBIB R01 EB023297;
NSF 1339856;
NSF 1146949
Free, Freely available nlx_151553, SCR_015767 http://www.nitrc.org/projects/nsg/ SCR_008915 Neuroscience Gateway - A Portal for Computational Neuroscience, Neuroscience Gateway, Neuroscience Gateway (NSG) Portal 2026-08-03 09:34:10 23
Homer2
 
Resource Report
Resource Website
100+ mentions
Homer2 (RRID:SCR_009586) image analysis software, software resource, software application, data processing software Software matlab scripts used for analyzing fNIRS data to obtain estimates and maps of brain activation. Graphical user interface (GUI) for visualization and analysis of functional near-infrared spectroscopy (fNIRS) data. Analysis, optical, imaging, fnirs, map, brain, activation, BRAIN Initiative is recommended by: BRAIN Initiative
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: NIRx2nirs: A NIRx to .nirs data converter
NIBIB EB025145;
NIBIB R01 EB006385;
NCRR P41 RR14075
Free, Available for download, Freely available nlx_155773 http://www.nitrc.org/projects/homer2, https://homer-fnirs.org/ SCR_009586 HOMER1, Photon Migration Imaging toolbox 2026-08-03 09:34:07 223
TRACULA
 
Resource Report
Resource Website
10+ mentions
TRACULA (RRID:SCR_013152) TRACULA software resource, software application, data processing software Software tool developed for automatically reconstructing a set of major white matter pathways in the brain from diffusion weighted images using probabilistic tractography. This method utilizes prior information on the anatomy of the pathways from a set of training subjects. By incorporating this prior knowledge in the reconstruction procedure, our method obviates the need for manual intervention with the tract solutions at a later stage and thus facilitates the application of tractography to large studies. The trac-all script is used to preprocess raw diffusion data (correcting for eddy current distortion and B0 field inhomogenities), register them to common spaces, model and reconstruct major white matter pathways (included in the atlas) without any manual intervention. trac-all may be used to execute all the above steps or parts of it depending on the dataset and user''''s preference for analyzing diffusion data. Alternatively, scripts exist to execute chunks of each processing pipeline, and individual commands may be run to execute a single processing step. To explore all the options in running trac-all please refer to the trac-all wiki. In order to use this script to reconstruct tracts in Diffusion images, all the subjects in the dataset must have Freesurfer Recons. tractography, white matter tract, white matter pathway, diffusion weighted image, diffusion magnetic resonance imaging, white matter, brain, reconstruct, diffusion tensor imaging is related to: FreeSurfer
has parent organization: Harvard Medical School; Massachusetts; USA
Aging NIH Blueprint for Neuroscience Research ;
Ellison Medical Foundation ;
NIBIB EB008129;
NIMH U01-MH093765;
NCRR P41-RR14075;
NCRR U24-RR021382;
NIBIB R01-EB006758;
NIA R01-AG022381;
National Center for Complementary and Alternative Medicine RC1-AT005728;
NINDS R01-NS052585;
NINDS R21-NS072652;
NINDS R01-NS070963
PMID:22016733 nlx_143919 SCR_013152 TRACULA - TRActs Constrained by UnderLying Anatomy, TRACULA: TRActs Constrained by UnderLying Anatomy, TRActs Constrained by UnderLying Anatomy 2026-08-03 09:35:19 17
CAWorks
 
Resource Report
Resource Website
1+ mentions
CAWorks (RRID:SCR_014185) image analysis software, software resource, software application, data processing software A software application developed to support computational anatomy and shape analysis. The capabilities of CAWorks include: interactive landmark placement to create segmentation (mask) of desired region of interest; specialized landmark placement plugins for subcortical structures such as hippocampus and amygdala; support for multiple Medical Imaging data formats, such as Nifti, Analyze, Freesurfer, DICOM and landmark data; Quadra Planar view visualization; and shape analysis plugin modules, such as Large Deformation Diffeomorphic Metric Mapping (LDDMM). Specific plugins are available for landmark placement of the hippocampus, amygdala and entorhinal cortex regions, as well as a browser plugin module for the Extensible Neuroimaging Archive Toolkit. image analysis software, computational anatomy, shape analysis, plugin, subcortex, landmark placement is used by: Northwestern University Schizophrenia Data and Software Tool (NUSDAST)
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Johns Hopkins University; Maryland; USA
NIMH 1R01 MH084803;
NIBIB R01 EB008171;
NIA 5U01AG033655;
NCRR P41 RR015241;
NIBIB R01 EB000975
Available to the research community http://www.cis.jhu.edu/software/caworks/ SCR_014185 Computational Anatomy Works 2026-08-03 09:35:24 1
DRIFTER
 
Resource Report
Resource Website
10+ mentions
DRIFTER (RRID:SCR_014937) image analysis software, software resource, software application, data processing software Model based Bayesian method for eliminating physiological noise from fMRI data. This algorithm uses image voxel analysis to isolate the cardiac and respiratory noise from the relevant data. bayesian, physiological noise, fMRI, algorithm, cardiac, respiratory, image anaylsis, bold signal has parent organization: Aalto University; Espoo; Finland NICHD R01HD040712;
NINDS R01NS037462;
NINDS R01NS048279;
NCR P41RR014075;
NIMH R01MH083744;
NIDCD R21DC010060;
NIBIB R21EB007298;
National Science Council Taiwan NSC 98-2320-B-002-004-MY3;
National Science Council Taiwan NSC 100-2325-B-002-046;
National Health Research Institute Taiwan NHRI-EX100-9715EC;
Academy of Finland 124698;
Academy of Finland 125349;
Academy of Finland 127624;
Academy of Finland 129670;
Academy of Finland 218054;
Academy of Finland 218248
PMID:22281675 Free, Available for download, Acknowledgement requested SCR_014937 DRIFTER Toolbox 2026-08-03 09:35:40 28
BECA
 
Resource Report
Resource Website
1+ mentions
BECA (RRID:SCR_015846) BECA software application, data processing software, image analysis software, software resource, data visualization software Visualization and analysis software for interactive visual exploration and mining of fiber-tracts and brain networks with their genetic determinants and functional outcomes. BECA includes an fMRI and Diseases Analysis version as well as a Genome Explorer version. visual exploration, brain, neuroscience, network, genetic determinant, fmri, neuroimaging, genome has parent organization: Indiana University School of Medicine; Indiana; USA NLM R01 LM011360;
NIA U01 AG024904;
NIA RC2 AG036535;
NIA R01 AG19771;
NIA P30 AG10133;
NSF IIS-1117335;
NIBIB R01 EB022574
PMID:27171688 Free, Available for download SCR_015846 Brain Explorer for Connectome Analysis (BECA), BECA - Brain Explorer for Connectome Analysis 2026-08-03 09:36:14 5
Archive of Data on Disability to Enable Policy (ADDEP)
 
Resource Report
Resource Website
Archive of Data on Disability to Enable Policy (ADDEP) (RRID:SCR_016315) ADDEP service resource, data or information resource, data repository, storage service resource Provides access to data including wide range of topics related to disability. ADDEP data can be used to better understand and inform the implementation of Americans with Disabilities Act and other disability policies. Data, access, disability is recommended by: National Library of Medicine NICHD ;
NINDS ;
NIBIB
SCR_016315 Archive of Data on Disability to Enable Policy 2026-08-03 09:36:22 0

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. RRID Portal Resources

    Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.