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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Nonhuman Primate Reagent Resource
 
Resource Report
Resource Website
100+ mentions
Nonhuman Primate Reagent Resource (RRID:SCR_012986) NHPRR antibody supplier, material resource, reagent supplier Center that facilitates the optimal use of nonhuman primate models in biomedical research by identifying, developing, characterizing and producing reagents for monitoring or modulating immune responses. They distribute non-human primate-specific antibodies for in vitro diagnostics, as well as develop and produce primate recombinant antibodies for in vivo cell depletion or modulating immune responses. anti-ig, antibody, biomedical, cell, depletion, diagnostic, immune, immunoglobulin, in vitro, in vivo, macaque, monkey, nonhuman, primate, reagent, recombinant, research, response, specie NIH Office of the Director R24 OD010976;
NIH HHSN272200900037C;
NIH HHSN286200400101C;
NIH HHSN2722001300031C;
NIAID AI126683;
NCRR RR016001;
NIAID AI040101;
NIH 272200900037C;
NIH 286200400101C;
NIH AI-126683;
NIH OD-010976;
NIH RR-016001;
NIH 2722001300031C;
NIH 272201300031C;
NIH AI-040101;
NIH NHPRR
nif-0000-24368 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models, http://www.nhpreagents.org/NHP/contact.aspx http://nhpreagents.bidmc.harvard.edu/NHP/default.aspx SCR_012986 nhp reagents, Nonhuman Primate Reagent Resources, Non-human primate repository, Non human Primate Reagent Resources, NHP Reagent Resource, nhpreagents, NIH Nonhuman Primate Reagent Resource, NHP Reagent, nhpreagent, Non-human Primate Reagent Resources 2026-08-03 09:35:07 221
Inxight
 
Resource Report
Resource Website
10+ mentions
Inxight (RRID:SCR_016490) organization portal, data or information resource, database, portal Portal of NCATS (the National Center for Advancing Translational Sciences) for drug development information including:US approved drugs, marketed drugs, investigational drugs. Provides manually curated data supplied by the FDA and private companies. Provides drugs marketing and regulatory status, drug ingredient definitions, biological activity and clinical use. drug, development, information, approved, marketed, investigational, data, supply, FDA, company, regulatory, status, ingredient, definition, biological, activity, clinical, use NIH Free, Freely available SCR_016490 2026-08-03 09:36:48 11
Complex Portal
 
Resource Report
Resource Website
1+ mentions
Complex Portal (RRID:SCR_015038) data or information resource, database, portal Database and encyclopaedic resource of macromolecular complexes found in key model organisms from scientific literature. Data includes protein-only complexes, protein-small molecules, and protein-nucleic acid complexes. The information within the portal is manually curated and available for download. database, molecular complex, model organism European Molecular Biology Laboratories Core Funding ;
NIH 268201000035C;
BBSRC BB/L024179/1
PMID:25313161
DOI:10.1093/nar/gku975
Open source, Available for download r3d100013295 https://doi.org/10.17616/R31NJMR3 SCR_015038 EBI Complex Portal 2026-08-03 09:35:59 1
Musculoskeletal Knowledge Portal
 
Resource Report
Resource Website
10+ mentions
Musculoskeletal Knowledge Portal (RRID:SCR_023171) MSK-KP topical portal, data or information resource, portal, disease-related portal Portal enables browsing, searching, and analysis of human genetic and genomic information linked to musculoskeletal traits and diseases, while protecting the integrity and confidentiality of underlying data. genomic data mining, human genetic data, genomic information, musculoskeletal traits and diseases data, DRKB musculoskeletal disease NIH AR085003 PMID:34686856 Free, Freely available https://msk.hugeamp.org/ SCR_023171 2026-08-03 09:38:08 18
KOMP2
 
Resource Report
Resource Website
1+ mentions
KOMP2 (RRID:SCR_017528) data or information resource, portal, project portal Knockout Mouse Phenotyping Project, JAX information about their contributions to KOMP2 project. Project to generate and phenotype single gene KO mouse strains from KOMP ES cell lines. Strains are phenotyped using protocols in pipeline designed by International Mouse Phenotyping Consortium. There are three NIH-funded phenotyping centers in United States: JAX, BaSH Consortium (Baylor College of Medicine, the Wellcome Trust Sanger Institute and MRC Harwell), and the DTCC Consortium (University of California at Davis, the Toronto Center for Phenogenomics, Children’s Hospital Oakland Research Institute (CHORI) and Charles River ). Generate, phenotype, single, gene, KO mouse, strain, KOMP ES cell line, IMPC, JAX is related to: International Mouse Phenotyping Consortium (IMPC)
is related to: Knockout Mouse Project
is related to: Knockout Mouse Project
NIH Free, Freely available SCR_017528 Knockout Mouse Phenotyping Project 2026-08-03 09:37:04 2
Science of Behavior Change Research Network
 
Resource Report
Resource Website
Science of Behavior Change Research Network (RRID:SCR_017385) SOBC data or information resource, portal, project portal Repository for behavioral science measures that have been validated or are in process of being validated in accordance with SOBC Experimental Medicine Approach. Data, behavioral, science, SOBC, measure, data, medicine NIH SCR_017388 https://scienceofbehaviorchange.org/measures/, https://scienceofbehaviorchange.org/measures/ SCR_017385 SOBC Measures Repository, Science of Behavior Change (SOBC) Research Network 2026-08-03 09:36:37 0
dbSTS
 
Resource Report
Resource Website
1+ mentions
dbSTS (RRID:SCR_000400) dbSTS data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE, as of October 1, 2013; however, the site is still accessible. NCBI resource that contains sequence and mapping data on short genomic landmark sequences or Sequence Tagged Sites. STS sequences are incorporated into the STS Division of GenBank. The dbSTS database offers a route for submission of STS sequences to GenBank. It is designed especially for the submission of large batches of STS sequences. genomic, mapping, sequence, gold standard, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: NCBI
NIH PMID:2781285 THIS RESOURCE IS NO LONGER IN SERVICE biotools:dbsts, nif-0000-20939, r3d100010649 https://bio.tools/dbsts, https://doi.org/10.17616/R39P5C SCR_000400 NCBI dbSTS: database of Sequence Tagged Sites, Sequence Tagged Sites Database, NCBI dbSTS, dbSTS: database of Sequence Tagged Sites, Database of Sequence Tagged Sites 2026-08-03 09:31:02 3
National Disease Research Interchange
 
Resource Report
Resource Website
100+ mentions
Rating or validation data
National Disease Research Interchange (RRID:SCR_000550) NDRI tissue bank, biomaterial supply resource, material resource NDRI is a Not-For-Profit (501c3) Corporation dedicated to providing the highest quality human biomaterials for research. NDRI makes it easy for researchers to get the human tissues and organs they need, prepared, preserved and shipped precisely according to their specific scientific protocols, as quickly as possible, and in the largest available quantities. NDRI provides researchers with protocol specific human neurological tissues such as brain stem, spinal cord, and basal ganglia, among others. In addition to control specimens, NDRI recovers tissues from donors with a variety of diseases, including Down syndrome, Parkinsons disease, Alzheimers disease, schizophrenia, and dementia. Through the NDRI 24/7 referral and procurement system, research consented biospecimens can be provided from low post mortem interval donors preserved at 4ºC, frozen or snap frozen, fixed, paraffin embedded, or as unstained slides. neurological, tissue, organ, cell, neurological tissue, brainstem, spinal cord, basal ganglia, cerebral cortex, hippocampus, frozen, snap frozen, fixed, paraffin embedded, unstained slide, disease, down syndrome, parkinson's disease, alzheimer's disease, schizophrenia, dementia, control, normal, catalog is listed by: One Mind Biospecimen Bank Listing
is listed by: Multiple Sclerosis Discovery Forum
is listed by: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB)
is parent organization of: Human Tissue and Organ for Research Resource (HTORR)
is parent organization of: Human Biological Data Interchange
is parent organization of: NDRI Dorsal Root Ganglia Program
Down syndrome, Parkinson's disease, Alzheimer's disease, Schizophrenia, Dementia NIH OD011158 Public: NDRI is a nonprofit organization that procures and distributes normal and diseased human biomaterials to biomedical researchers in academia, government, and industry. nlx_99804 SCR_000550 2026-08-03 09:31:05 190
WikiPathways
 
Resource Report
Resource Website
1000+ mentions
WikiPathways (RRID:SCR_002134) service resource, data or information resource, database Open and collaborative platform dedicated to curation of biological pathways. Each pathway has dedicated wiki page, displaying current diagram, description, references, download options, version history, and component gene and protein lists. Database of biological pathways maintained by and for scientific community. database, knowledge environment resource, image, web service, biological pathway, diagram description, reference, pathway, FASEB list is used by: NIF Data Federation
is used by: Open PHACTS
is related to: PharmGKB
is related to: Reactome
is related to: NetPath
is related to: ConsensusPathDB
is related to: NCBI BioSystems Database
is related to: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
has parent organization: University of California at San Francisco; California; USA
has parent organization: Maastricht University; Maastricht; Netherlands
NIH ;
Netherlands Bioinformatics Centre ;
Google Summer of Code program ;
NWO - Netherlands Organization for Scientific Research ;
NIGMS GM080223;
NIGMS R01 GM100039
PMID:22096230
PMID:18651794
Free, Freely available nif-0000-20925, r3d100013316 SCR_002134 Wiki Pathways 2026-08-03 09:31:45 1696
Mutation Annotation and Genomic Interpretation
 
Resource Report
Resource Website
Mutation Annotation and Genomic Interpretation (RRID:SCR_002800) MAGI data analysis service, service resource, analysis service resource, production service resource A tool for annotating, exploring, and analyzing gene sets that may be associated with cancer. mutation, interaction, transcript, copy number aberration, network uses: The Cancer Genome Atlas
uses: HINT
uses: HPRD - Human Protein Reference Database
uses: Pfam
uses: SMART
uses: Conserved Domain Database
is listed by: OMICtools
has parent organization: Brown University; Rhode Island; USA
Cancer NSF ;
NIH ;
Brown University; Rhode Island; USA
Free, Freely available, Available for download OMICS_06145 SCR_002800 MAGI - A tool for Mutation Annotation and Genomic Interpretation 2026-08-03 09:31:50 0
UNC Infant 0-1-2 Atlases
 
Resource Report
Resource Website
1+ mentions
UNC Infant 0-1-2 Atlases (RRID:SCR_002569) UNC Infant 0-1-2 Atlases data or information resource, atlas 3 atlases dedicated for neonates, 1-year-olds, and 2-year-olds. Each atlas comprises a set of 3D images made up of the intensity model, tissue probability maps, and anatomical parcellation map. These atlases are constructed with the help of state-of-the-art infant MR segmentation and groupwise registration methods, on a set of longitudinal images acquired from 95 normal infants (56 males and 39 females) at neonate, 1-year-old, and 2-year-old. analyze, atlas application, linux, macos, microsoft, magnetic resonance, posix/unix-like, infant, pediatric, template, longitudinal, neonate, male, female, mri is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of North Carolina at Chapel Hill School of Medicine; North Carolina; USA
Normal NIH ;
NIBIB EB006733;
NIBIB EB008760;
NIBIB EB008374;
NIBIB EB009634;
NIMH MH088520;
NIMH MH070890;
NIMH MH064065;
NINDS NS055754;
NICHD HD053000
PMID:21533194 Free, Available for download, Freely available nlx_155971 http://www.nitrc.org/projects/pediatricatlas SCR_002569 UNC 0-1-2 Infant Atlases 2026-08-03 09:31:44 2
Nucleic Acid Database
 
Resource Report
Resource Website
10+ mentions
Nucleic Acid Database (RRID:SCR_003255) NDB data or information resource, database A database of three-dimensional structural information about nucleic acids and their complexes. In addition to primary data, it contains derived geometric data, classifications of structures and motifs, standards for describing nucleic acid features, as well as tools and software for the analysis of nucleic acids. A variety of search capabilities are available, as are many different types of reports. NDB maintains the macromolecular Crystallographic Information File (mmCIF). nucleic acid, dna, nucleopeptide, nucleoprotein, nucleotide, rna, transfection, sequence, structure, function, bio.tools, FASEB list is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is related to: MINAS - Metal Ions in Nucleic AcidS
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: Jenalib: Jena Library of Biological Macromolecules
has parent organization: Rutgers University; New Jersey; USA
NSF ;
DOE ;
NIH
PMID:24185695
PMID:1384741
Free, Available for download, Freely available nif-0000-03184, biotools:ndb, r3d100010415 https://bio.tools/ndb, https://doi.org/10.17616/R3531R SCR_003255 2026-08-03 09:32:16 36
MITOMAP - A human mitochondrial genome database
 
Resource Report
Resource Website
100+ mentions
MITOMAP - A human mitochondrial genome database (RRID:SCR_002996) MITOMAP data or information resource, database Database of polymorphisms and mutations of the human mitochondrial DNA. It reports published and unpublished data on human mitochondrial DNA variation. All data is curated by hand. If you would like to submit published articles to be included in mitomap, please send them the citation and a pdf. gene, genome, diabetes, disease, disease-association, high resolution screening, human, inversion, metabolism, mitochondrial dna, mutation, phenotype, polymorphism, polypeptide assignment, pseudogene, restriction site, rna, sequence, trna, unpublished, variation, mitochondria, dna, insertion, deletion, FASEB list is used by: HmtVar
is listed by: OMICtools
is related to: Hereditary Hearing Loss Homepage
has parent organization: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA
has parent organization: Emory University School of Medicine; Atlanta; Georgia; USA
NIH ;
Muscular Dystrophy Foundation ;
Ellison Foundation ;
Diputacion General de Aragon Grupos consolidados B33 ;
NIGMS GM46915;
NINDS NS21328;
NHLBI HL30164;
NIA AG10130;
NIA AG13154;
NINDS NS213L8;
NHLBI HL64017;
NIH Biomedical Informatics Training Grant T15 LM007443;
NSF EIA-0321390;
Spanish Fondo de Investigacion Sanitaria PI050647;
Ciber Enfermedades raras CB06/07/0043
PMID:17178747
PMID:15608272
PMID:9399813
PMID:9016535
PMID:8594574
Except where otherwise noted, Creative Commons Attribution License, The community can contribute to this resource nif-0000-00511, OMICS_01641 SCR_002996 2026-08-03 09:32:10 368
MiST - Microbial Signal Transduction database
 
Resource Report
Resource Website
10+ mentions
MiST - Microbial Signal Transduction database (RRID:SCR_003166) MiST data or information resource, database Database which contains the signal transduction proteins for complete and draft bacterial and archaeal genomes. The MiST2 database identifies and catalogs the repertoire of signal transduction proteins in microbial genomes. signal transduction proteins, bacterial genome, archaeal genome, microbial genome, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: University of Tennessee Knoxville; Tennessee; USA
South Carolina Research Association ;
DOE Office of Science ;
NIH ;
NIGMS GM083177
PMID:19900966 Free, Freely available biotools:mist, nif-0000-03140 https://bio.tools/mist SCR_003166 MiST 2.2, Microbial Signal Transduction Database, Microbial Signal Transduction database (MiST), MiST2 2026-08-03 09:32:13 31
IntegromeDB
 
Resource Report
Resource Website
1+ mentions
IntegromeDB (RRID:SCR_004620) data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE, documented May 26, 2016. Search engine that integrates over 100 curated and publicly contributed data sources and provides integrated views on the genomic, proteomic, transcriptomic, genetic and functional information currently available. Information featured in the database includes gene function, orthologies, gene expression, pathways and protein-protein interactions, mutations and SNPs, disease relationships, related drugs and compounds. catalog, search engine, gene, protein, gene regulation, gene expression, protein-protein interaction, pathway, metagenomics, mutation, disease, transcriptional regulation, genomics, transcriptomics, genetics, function, interaction, ortholog is related to: ABS: A Database of Annotated Regulatory Binding Sites From Orthologous Promoters
has parent organization: University of California at San Diego; California; USA
NIH ;
NIGMS R01 GM084881
PMID:22260095
PMID:20427517
THIS RESOURCE IS NO LONGER IN SERVICE nlx_63198 SCR_004620 Integrome DB 2026-08-03 09:32:38 3
Phenologs
 
Resource Report
Resource Website
1+ mentions
Phenologs (RRID:SCR_005529) Phenologs data or information resource, database Database for identifying orthologous phenotypes (phenologs). Mapping between genotype and phenotype is often non-obvious, complicating prediction of genes underlying specific phenotypes. This problem can be addressed through comparative analyses of phenotypes. We define phenologs based upon overlapping sets of orthologous genes associated with each phenotype. Comparisons of >189,000 human, mouse, yeast, and worm gene-phenotype associations reveal many significant phenologs, including novel non-obvious human disease models. For example, phenologs suggest a yeast model for mammalian angiogenesis defects and an invertebrate model for vertebrate neural tube birth defects. Phenologs thus create a rich framework for comparing mutational phenotypes, identify adaptive reuse of gene systems, and suggest new disease genes. To search for phenologs, go to the basic search page and enter a list of genes in the box provided, using Entrez gene identifiers for mouse/human genes, locus ids for yeast (e.g., YHR200W), or sequence names for worm (e.g., B0205.3). It is expected that this list of genes will all be associated with a particular system, trait, mutational phenotype, or disease. The search will return all identified model organism/human mutational phenotypes that show any overlap with the input set of the genes, ranked according to their hypergeometric probability scores. Clicking on a particular phenolog will result in a list of genes associated with the phenotype, from which potential new candidate genes can identified. Currently known phenotypes in the database are available from the link labeled ''Find phenotypes'', where the associated gene can be submitted as queries, or alternately, can be searched directly from the link provided. gene, phenotype, ortholog, genotype, human, mouse, yeast, worm has parent organization: University of Texas at Austin; Texas; USA Texas Advanced Research Program ;
Welch Foundation ;
Packard Fellowship ;
March of Dimes ;
Texas Institute for Drug and Diagnostic Development ;
NSF ;
NIH ;
NIGMS
PMID:20308572 nlx_144624 SCR_005529 phenologs.org, Phenologs - Systematic discovery of non-obvious disease models and candidate genes 2026-08-03 09:32:53 4
BiGG Database
 
Resource Report
Resource Website
100+ mentions
BiGG Database (RRID:SCR_005809) BiGG data or information resource, database A knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. BiGG integrates several published genome-scale metabolic networks into one resource with standard nomenclature which allows components to be compared across different organisms. BiGG can be used to browse model content, visualize metabolic pathway maps, and export SBML files of the models for further analysis by external software packages. Users may follow links from BiGG to several external databases to obtain additional information on genes, proteins, reactions, metabolites and citations of interest. biochemical, genetics, genomics, genome, metabolic network, reconstruction, model, metabolic pathway, gene, protein, reaction, metabolite, metabolic reconstruction, compound, pathway, FASEB list uses: SBML
is used by: BiGGR
is listed by: 3DVC
has parent organization: University of California at San Diego; California; USA
NIH ;
Ruth L. Kirschstein National Research Service Award - NIH Bioinformatics Training ;
University of California at San Diego; California; USA ;
Calit2 summer research scholarship ;
NIGMS GM00806-06
PMID:20426874 nlx_149299, r3d100011567 https://doi.org/10.17616/R3MG9M SCR_005809 BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions, BiGG - a Biochemical Genetic and Genomic knowledgebase 2026-08-03 09:32:56 124
GO-Module
 
Resource Report
Resource Website
1+ mentions
GO-Module (RRID:SCR_005813) GO-Module data analysis service, service resource, analysis service resource, production service resource GO-Module provides an interface to reduce the dimensionality of GO enrichment results and produce interpretable biomodules of significant GO terms organized by hierarchical knowledge that contain only true positive results. Users can download a text file of GO terms annotated with their significance and identified biomodules, a network visualization of resultant GO IDs or terms in PDF format, and view results in an online table. Platform: Online tool functional similarity, visualization, other analysis, reduce the dimensionality of go enrichment results, produce interpretable biomodules of significant go terms, gene ontology, ontology or annotation visualization, annotation is listed by: Gene Ontology Tools
is related to: Gene Ontology
is related to: AmiGO
has parent organization: University of Illinois at Chicago; Illinois; USA
NIH ;
Cancer Research Foundation ;
NLM K22 LM008308;
NCI 1U54CA121852;
NCRR UL1 RR024999
PMID:21421553 Free for academic use nlx_149322 SCR_005813 Hierarchical optimization of enriched GO terms 2026-08-03 09:32:56 3
Worldwide Protein Data Bank (wwPDB)
 
Resource Report
Resource Website
1000+ mentions
Worldwide Protein Data Bank (wwPDB) (RRID:SCR_006555) wwPDB data or information resource, database Public global Protein Data Bank archive of macromolecular structural data overseen by organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). This site provides information about services provided by individual member organizations and about projects undertaken by wwPDB. Data available via websites of its member organizations. 3-dimentional, bioinformatics, protein, research, structure, macromolecule, structural data, 3d spatial image, gold standard is used by: Ligand Expo
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: Proteopedia - Life in 3D
is related to: NRG-CING
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: PDBe - Protein Data Bank in Europe
is related to: PDBe - Protein Data Bank in Europe
is related to: PDBj - Protein Data Bank Japan
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: PDB Validation Server
is related to: Structural Antibody Database
is parent organization of: PDB-Dev
works with: PDB-REDO
NSF ;
NIGMS ;
DOE ;
NLM ;
NCI ;
NINDS ;
NIDDK ;
European Molecular Biology Laboratory ;
Heidelberg; Germany ;
Wellcome Trust ;
BBSRC ;
NIH ;
European Union ;
NBDC - National Bioscience Database Center ;
Japan Science and Technology Agency
PMID:14634627 Free, Freely available nif-0000-23903, r3d100011104 https://doi.org/10.17616/R3462V SCR_006555 World Wide Protein DataBank, wwPDB, Worldwide Protein Data Bank (wwPDB), World Wide Protein Data Bank, Worldwide Protein DataBank 2026-08-03 09:33:06 1215
SEDFIT
 
Resource Report
Resource Website
10+ mentions
SEDFIT (RRID:SCR_018365) software resource, data processing software, software application, data analysis software Software tool for analytical ultracentrifugation developed by Dynamics of Macromolecular Assembly group of Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, NIH. Used for biophysical analysis of macromolecular assembly. Analytical ultracentrifugation, biophysical analysis, macromolecular assembly, data, analysis, National Institute of Biomedical Imaging and Bioengineering is listed by: SoftCite NIH Free, Available for download, Freely available SCR_018365 SEDFIT version 14.7g 2026-08-03 09:36:57 25

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