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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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NITRC-IR Resource Report Resource Website 1+ mentions |
NITRC-IR (RRID:SCR_004162) | NITRC IR | image database, database, data repository, catalog, service resource, data or information resource, storage service resource, image repository | Data repository for neuroimaging data in DlCOM and NIFTI formats. It allows users to search for and freely download publicly available data sets relating to normal subjects and those with diagnoses such as: schizophrenia, ADHD, autism, and Parkinson's disease.XNAT-based image registry that supports both NIfTI and DICOM images to promote re-use and integration of NIH funded data. | database, neuroimaging, magnetic resonance, mri, image collection, nifti, dicom |
uses: XNAT Central is used by: NIF Data Federation lists: 1000 Functional Connectomes Project lists: studyforrest.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: 1000 Functional Connectomes Project is related to: NITRC Enhanced Services has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Bipolar Disorder, Schizophrenia, Parkinson's disease, ADHD | NINDS R44 NS074540; NIBIB U24 EB023398 |
PMID:26044860 | Free, Available for download, Freely available | nlx_18447, SCR_015623 | SCR_004162 | NeuroImaging Tools and Resources Collaboratory Image Repository, NITRC Image Repository | 2025-04-02 11:03:17 | 8 | ||||
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NIMH Intramural Research Program Clinical Brain Disorders Branch Resource Report Resource Website 10+ mentions |
NIMH Intramural Research Program Clinical Brain Disorders Branch (RRID:SCR_008728) | CBDB | topical portal, portal, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 07, 2013. A multidisciplinary neuroscience laboratory in which basic and clinical scientists work side by side exploring neural mechanisms and models of mental and cognitive function and of neuropsychiatric illness. Experiments are performed at many levels of inquiry, from basic molecular biology of the gene to clinical examinations of patients. A major area of investigation of this laboratory is the genetic mechanisms implicated in the pathogenesis of schizophrenia and its treatment. The laboratory is organized as a multi-disciplinary team of investigators with a common mission: to identify and fully characterize basic genetic and neurobiological mechanisms of schizophrenia and related cognitive and emotional disorders. The various components of this effort are centered various different units or divisions represented by groups of investigators, at various levels of training and experience, working on related experiments. The Director of the Branch and of the Genes, Cognition and Psychosis Program (GCAP) is Daniel R. Weinberger, M.D. The CBDB is the principle research laboratory in the created (2003) Genes, Cognition, and Psychosis Program (GCAP) of the NIMH. After twelve years of residing on the pastoral grounds of St. Elizabeths Hospital, in Southeast Washington, CBDB moved back to the main NIH campus in Bethesda, Maryland in 1998. While the unique setting of St. Elizabeths is irreplaceable, we have occupied beautiful new laboratories and clinic spaces that were created for us, and we are in the mainstream of NIH life. | mental function, cognitive function, gene, clinical, treatment, pathogen |
is related to: Genes Cognition and Psychosis Program has parent organization: NIMH Division of Intramural Research Programs is parent organization of: NIMH Brain Tissue Collection |
Schizophrenia, Neuropsychiatric illness, Cognitive disorder, Emotional disorder | NIMH | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143685 | SCR_008728 | NIMH Clinical Brain Disorders Branch, Clinical Brain Disorders Branch | 2025-04-02 11:07:41 | 12 | |||||
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Prediction and Diagnosis for Depression and Schizophrenia Resource Report Resource Website |
Prediction and Diagnosis for Depression and Schizophrenia (RRID:SCR_014161) | topical portal, portal, data or information resource | A topical portal for the UAIS Lab of Lanzhou University which researches predicting depression and schizophrenia based on demographics and physiological information (EEG, ERPs, Genetics, MRI, fMRI, etc.). It also researches wearable bio-signal sensors and antennas, bio-signal processing, speech analysis, pervasive mental health, psycho-physiological computing, bioinformatics and multimodal data fusion and modeling. | topical portal, lab, depression, schizophrenia, demographic, physiological | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Depression, Schizophrenia | Public | http://www.nitrc.org/projects/zhangxw | SCR_014161 | UAIS Lab of Lanzhou University | 2025-04-02 11:10:11 | 0 | |||||||
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SchizConnect Resource Report Resource Website 50+ mentions |
SchizConnect (RRID:SCR_015766) | topical portal, disease-related portal, portal, database, data or information resource | Platform for mediation and integration of schizophrenia neuroimaging-related databases. It provides access to federated databases, novel mediation software, and large-scale data-sharing features. | schizophrenia, mediation, integration, neuroimaging, mental illness, brain disorder, FASEB list | Schizophrenia | NIMH 1U01MH097435 | PMID:26688837 | Freely available, Demo available, Tutorial available, Available to the scientific community | SCR_015766 | 2025-04-02 11:11:42 | 59 | ||||||||
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SynSysNet Resource Report Resource Website 1+ mentions |
SynSysNet (RRID:SCR_003180) | SynSysNet | database, data or information resource | A curated database for synaptic proteins that provides adequate definitions of pre- and post-synaptic proteins, proteins present in sub-domains of the synapse, e.g. the synaptic vesicle and associated proteins, lipid rafts and postsynaptic density. In addition to data that was and will be gathered from the experiments conducted within SynSys - A European expertise Network on building the synapse, they have extracted and manually curated all relevant data on these proteins from other sources and provided an ontology for these. Novel splice forms are being identified that can be matched with proteomics data. Information on proteins, their 3D structure, binding small molecules Protein-Protein-Interactions (PPIs) and Compound-Protein-Interactions are integrated. Proteins or compounds can be searched and Interactive Networks can be visualized. The point Diseases present neurological diseases, to illustrate the role of SynSysNet in the medication. | gene, synapse, protein, interaction, compound, disease, structure, model, compound, protein-drug interaction, protein-protein interaction, pathway, drug-target, small molecule, interaction network, homology, drug, drug-target interaction, compound-protein interaction, visualization, proteomics, network |
is listed by: OMICtools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: KEGG has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany |
Huntington's disease, Chorea Huntington, Epilepsy, Multiple Sclerosis, Parkinson's disease, Schizophrenia, Neurological disease | European Union Seventh FPSYNSYS 242167; DFG GRK1772; DFG GRK1360 |
PMID:23143269 | Creative Commons Attribution-NonCommercial-ShareAlike License, v3 Unported | nlx_156893, OMICS_01914 | SCR_003180 | SynSysNet - Synaptic Proteins Database | 2025-04-02 11:02:40 | 3 | ||||
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Sullivan Lab Evidence Project Resource Report Resource Website 1+ mentions |
Sullivan Lab Evidence Project (RRID:SCR_000753) | SLEP | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Database of genetic and gene expression data from the published literature on psychiatric disorders. Users can search the accumulated data to find the evidence in support of the involvement of a particular genomic region with a set of important psychiatric disorders, ADHD, autism, bipolar disorder, eating disorder, major depressive disorder, schizophrenia, and smoking behavior. It contains findings from manual reviews of 144 papers in psychiatric genetics, 136 primary reports and 8 meta-analyses. Disorders covered include schizophrenia (44 papers), autism (24 papers), bipolar disorder (24 papers), smoking behavior (24 papers), major depressive disorder and neuroticism (14 papers), ADHD (8 papers), eating disorders (3 papers), and a combined schizophrenia-bipolar phenotype (3 papers). The unbiased searches integrated into SLEP include genomewide linkage (117 papers), genomewide association (15 papers), copy number variation (9 papers), and gene expression studies of post-mortem brain tissue (3 meta-analyses courtesy of the Stanley Foundation). In total, SLEP captures 3,741 findings from these 144 papers. SLEP also contains over 70,000 SignPosts. These annotations derive from many different sources and are designed to try to capture current state of knowledge about disease associations in the human genome. SignPosts can be searched simultaneously with the psychiatric genetics literature in order to integrate these two bodies of knowledge. The SignPosts include: accumulated GWAS findings from the human genetics literature, the OMIM database, candidate gene association study literature, CNV location and frequency data, SNPs that influence gene expression in brain, genes expressed in brain, genes with evidence of imprinting and random monoalleleic expression, genes mutated in breast or colorectal cancer, and pathway data from BioCyc. | eating disorder, gene, gene expression, adhd, autism, bipolar disorder, brain, breast, cancer, colorectal, combined schizophrenia-bipolar, disease, genomic region, imprinting, major depressive disorder, meta-analysis, monoalleleic, mutation, neuroticism, post-mortem, psychiatric disorder, schizophrenia, smoking behavior, tissue, molecular neuroanatomy resource | Eating disorder, Bipolar disorder, Brain, Breast cancer, Colorectal cancer, Combined schizophrenia-bipolar disease, Genomic region, Imprinting, Major depressive disorder, schizophrenia, Smoking behavior, Autism, Attention deficit-hyperactivity disorder | NIMH MH097281 | PMID:18548508 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10439 | SCR_000753 | 2025-04-02 11:00:22 | 3 | ||||||
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GWASrap Resource Report Resource Website 1+ mentions |
GWASrap (RRID:SCR_013144) | GWASrap | analysis service resource, production service resource, data set, data access protocol, data analysis service, service resource, data or information resource, web service, software resource | GWASrap is a comprehensive web-based bioinformatics tool to systematically support variant representation, annotation and prioritization for data generated from genome-wide association studies (GWAS) and Next Generation Sequencing (NGS). Our web-based framework utilizes state-of-the-art web technologies to maximize user interaction and visualization of the results. For a given SNP dataset with its P-values, GWASrap will first provide a Circos-style plot to visualize any genetic variants at either the genome or chromosome level. The tool then combines different genomic features (SNP/CNV density, disease susceptibility loci, etc.) with comprehensive annotations that give the researcher an intuitive view of the functional significance of the different genomic regions. The detailed statistics of the underlying study are also displayed on the web page, including variant distribution in different functional categories, classic Manhattan plot and QQ plot. Users can perform interactive operations in the Manhattan panel, such as zooming in and out to search regions or markers of interest. The system can also display a comprehensive range of relevant information from variant genetic attributes to nearby genomic elements, such as enhancers or non-coding RNAs. Furthermore, researchers can obtain extensive functional predictions for various features including transcription factor-binding sites, miRNA and miRNA target sites, and their predicted changes caused by the genetic variants. Our system can re-prioritize genetic variants by combining the original statistical value and variant prioritization score based on a simple additive effect equation. Researchers can also re-evaluate the significance of a trait/disease-associated SNP (TAS) using the dynamic linkage disequilibrium (LD) panel or the tree-like network panel. The GWASrap supports input variants in different formats, not only common variants with a dbSNP rs ID but also rare variants from NGS data, which are represented by chromosome and locations. GWASrap provides a range of web services for data retrieving about the annotation information and effect prediction of each variant in dbSNP using the SOAP interface. The WSDL for each service is available in the API tab. Each service returns JSON string including all related information with key/value. GWASrap provides running results about some current published GWAS as well as a category view for each hot disease / trait. The dataset is brought from published database GWAS or curated from literature. | genome wide association study, annotation, next generation sequencing, genetic variant, prioritize, visualize, genome, chromosome, functional prediction, transcription factor-binding site, mirna, mirna target site, prediction, target site, transcription factor, binding site, statistics, trait/disease-associated snp, single nucleotide polymorphism, trait, disease, representation, linkage disequilibrium | is related to: GWASdb | Bipolar Disorder, Alzheimer's disease, Depression, Parkinson Disease, Diabetes Mellitus, Amyotrophic Lateral Sclerosis, Rheumatoid Arthritis, HIV-1 Disease, Human immunodeficiency virus, Hematopoietic System Disease, Prostate Cancer, Coronary Artery Disease, Schizophrenia, Arteriopathy, Multiple Sclerosis, Crohn''''s Disease, Hypertension, Breast Cancer | PMID:22801476 | nlx_151497 | SCR_013144 | GWASrap - SNPs Representing Annotating and Prioritizing Tool for Genome Wide Association Study | 2025-04-02 11:09:51 | 2 | ||||||
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Wiring the Brain Resource Report Resource Website |
Wiring the Brain (RRID:SCR_005528) | Wiring the Brain | blog, narrative resource, data or information resource | This blog highlights and comments on current research and hypotheses relating to how the brain wires itself up during development, how the end result can vary in different people and what happens when it goes wrong. It includes discussions of the genetic and neurodevelopmental bases of traits such as intelligence and personality characteristics, as well as of conditions such as schizophrenia, autism, dyslexia, epilepsy, synaesthesia and others. | research, brain, development, genetic, wiring, neurodevelopment, trait, intelligence, personality, schizophrenia, autism, dyslexia, epilepsy, synaesthesia | Schizophrenia, Autism, Dyslexia, Epilepsy, Synaesthesia, Etc. | nlx_144622 | SCR_005528 | 2025-04-02 11:04:42 | 0 | |||||||||
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Polygenic Pathways Resource Report Resource Website 1+ mentions |
Polygenic Pathways (RRID:SCR_006962) | database, data or information resource | Database of disease genes and risk factors and of host pathogen/interactomes. Lists genes, pathways and environmental risk factors positively associated with diseases and conditions such as Alzheimer's disease, schizophrenia, multiple sclerosis, childhood obesity, anorexia nervosa, HIV-1/AIDS, and helicobacter pylori. Details of polymorphisms as well as negative/positive association data can be found via Useful links. Throughout the site are links to Entrez Gene and Pubmed. | genetic disease, risk factor, host pathogen, interactome, polygenic pathway, bio.tools |
is listed by: bio.tools is listed by: Debian is parent organization of: Polygenic Pathways Jobs is parent organization of: PolygenicBlog |
Alzheimer's disease, Schizophrenia, Bipolar disorder, depression, Parkinson's disease, Huntington's disease, Multiple sclerosis, Cystic fibrosis, Childhood obesity, Chronic fatigue syndrome, Autism, Anorexia nervosa, Attention deficit hyperactivity disorder, HIV-1/AIDS | Google ; Amazon |
Free, Freely available | nif-0000-00514, biotools:polygenicpathways, SCR_015716 | https://bio.tools/polygenicpathways | SCR_006962 | PolygenicPathways, Polygenic Signaling Pathways | 2025-04-02 11:05:42 | 4 | |||||
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Brain and Body Genetic Resource Exchange Resource Report Resource Website 1+ mentions |
Brain and Body Genetic Resource Exchange (RRID:SCR_008959) | BB-GRE | database, data or information resource | A database and associated tools for investigating the genetic basis of neurodisability. It combines phenotype information from patients with neurodevelopmental and behavioral problems with clinical genetic data, and displays this information on the human genome map. Basic access to genetic information (deletions, duplications) relating to participants with neurodevelopmental disorders is provided without an account; access to the full dataset requires an account. The genetic information that is available to view comprises potentially pathogenic copy number variation across the genome, detected by array comparative genome hybridization (aCGH) using a customized 44K oligonucleotide array. | developmental disorder, copy number, neurodevelopmental disorder, child, phenotype, genotype-phenotype, brain, genetic, gene, genotype, behavior, clinical, genome, neurodevelopment, behavioral disorder, genetic variant, development | has parent organization: King's College London; London; United Kingdom | Schizophrenia, Mental retardation, Attention deficit hyperactivity disorder, Developmental language delay, Dyslexia, Sleep disorder, Epilepsy, Dysmorphism, Neurodisability, Autism | Acknowledgement required | nlx_151987 | http://bbgre-dev.iop.kcl.ac.uk/info/about-us | SCR_008959 | BBGRE.org, Brain & Body Genetic Resource Exchange, BB-GRE database | 2025-04-02 11:07:51 | 1 | |||||
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KI Biobank - STAR Resource Report Resource Website |
KI Biobank - STAR (RRID:SCR_005923) | KI Biobank - STAR | biomaterial supply resource, material resource | Large, ongoing, multifactorial study based on nation-wide ascertainment of patients with schizophrenia and bipolar disorder through the Swedish Twin Registry to include both neuroimaging data, neurocognitive function, molecular genetic data and early adverse environmental factors in the same model in a genetic sensitive design. Swedish schizophrenia research will benefit from this large study database of in total 240 affected and healthy twin pairs collected over a 5 year period. The specific aims are: * To elucidate neural endophenotypes for schizophrenia and bipolar disorder and to clarify the extent of overlap in these features between the two syndromes. * To investigate candidate genes and genomic regions for linkage and association with neural endophenotypes for schizophrenia and bipolar disease. * To determine the contributions of adverse prenatal and perinatal conditions to neural changes associated with schizophrenia and bipolar disease. Types of samples * EDTA whole blood * DNA * RNA Number of sample donors: 251 (June 2010) | twin, neuroimaging, environmental factor, environment, gene, endophenotype, behavioral symptom, phenotype, neural endophenotype, genetics, adverse fetal environment, prenatal event, perinatal condition, neurocognitive, mri |
uses: Swedish Twin Registry is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Schizophrenia, Bipolar Disorder, Healthy, Normal control, Normal twin | NIMH ; Stockholm County Council ; ALF-medel |
nlx_149611 | http://ki.se/forskning/star | http://ki.se/ki/jsp/polopoly.jsp?d=29350&a=36309&l=en | SCR_005923 | Schizophrenia and Bipolar Disorder: Neural endophenotypes genetic liability and adverse fetal environment, KI Biobank - Schizophrenia Twins and Relatives, Schizophrenia Twins and Relatives | 2025-04-02 11:05:00 | 0 | ||||
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KI Biobank - BROAD Resource Report Resource Website 10+ mentions |
KI Biobank - BROAD (RRID:SCR_005916) | KI Biobank - BROAD | biomaterial supply resource, material resource | The study will collect 1,500 cases with schizophrenia and 1,500 well-matched controls ascertained via high-quality Swedish national hospitalization and population registries. Both cases and controls will be population-based and of Scandinavian ancestry. Types of samples * EDTA whole blood * DNA Number of donors: 10 820 (June 2010) | matched control, psychiatric disease, population |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Schizophrenia, Normal control | nlx_149508 | http://ki.se/ki/jsp/polopoly.jsp?d=29350&a=24110&l=en | SCR_005916 | 2025-04-02 11:05:00 | 10 | |||||||
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CANDI Share: Schizophrenia Bulletin 2008 Resource Report Resource Website 1+ mentions |
CANDI Share: Schizophrenia Bulletin 2008 (RRID:SCR_009451) | CANDI Share: Schizophrenia Bulletin 2008 | data set, data or information resource | This project hosts data for CANDI Share Schizophrenia Bulletin 2008 (reference below) as part of the CANDI Neuroimaging Access Point. This set includes preprocessed MRI images and segmentation results of all 4 diagnostic groups (Healthy Controls, N=29; Schizophrenia Spectrum, N=20; Bipolar Disorder with Psychosis, N=19; and Bipolar Disorder without Psychosis, N=35). Frazier JA, Hodge SM, Breeze JL, Giuliano AJ, Terry JE, Moore CM, Kennedy DN, Lopez-Larson MP, Caviness VS, Seidman LJ, Zablotsky B, Makris N. Diagnostic and sex effects on limbic volumes in early-onset bipolar disorder and schizophrenia. Schizophr Bull. 2008 Jan;34(1):37-46. | magnetic resonance, mri, segmentation, image collection |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: CANDI Neuroimaging Access Point |
Bipolar Disorder, Schizophrenia, Healthy, Bipolar Disorder without psychosis, Bipolar Disorder with psychosis, Psychosis | PMID:18003631 | Creative Commons Attribution License | nlx_155595 | SCR_009451 | 2025-04-02 11:07:56 | 1 |
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