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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University of Oviedo; Oviedo; Spain Resource Report Resource Website 1+ mentions |
University of Oviedo; Oviedo; Spain (RRID:SCR_006359) | university | Public university in Asturias. It is the only university in the region. It has three campus and research centres, located in Oviedo, Gijón and Mieres. |
is parent organization of: Mammalian Degradome Database is parent organization of: Human Hereditary Diseases of Proteolysis is parent organization of: Ancillary Domains Associated With Human and Mouse Proteases |
nlx_53766, ISNI:0000 0001 2164 6351, grid.10863.3c, Wikidata:Q2303432, Crossref funder ID:501100006382 | https://ror.org/006gksa02 | SCR_006359 | 2026-08-01 12:03:08 | 1 | ||||||||||
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WebScope Resource Report Resource Website 10+ mentions |
WebScope (RRID:SCR_006355) | WebScope | image collection, data or information resource | Expansive collection of high-quality wholeslide images | nlx_152089 | SCR_006355 | Aperio WebScope | 2026-08-01 12:03:08 | 17 | ||||||||||
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University of Oulu; Oulu; Finland Resource Report Resource Website |
University of Oulu; Oulu; Finland (RRID:SCR_006301) | university | One of the largest universities in Finland, located in the city of Oulu. It was founded on July 8, 1958. | Wikidata:Q1357517, nlx_60067, grid.10858.34, Crossref funder ID:501100006196, ISNI:0000 0001 0941 4873 | https://ror.org/03yj89h83 | SCR_006301 | 2026-08-01 12:03:06 | 0 | |||||||||||
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SNPdryad Resource Report Resource Website 1+ mentions |
SNPdryad (RRID:SCR_006414) | SNPdryad | service resource | Service to predict deleterious non-synonymous human Single Nucleotide Polymorphisms (SNPs) using only orthologous protein sequences. | non-synonymous, single nucleotide polymorphism, ortholog, protein sequence |
is listed by: OMICtools has parent organization: University of Toronto; Ontario; Canada |
PMID:24389653 | OMICS_02198 | SCR_006414 | SNPdryad - Deleterious Non-Synonymous SNP Predictions for Human | 2026-08-01 12:03:11 | 3 | |||||||
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QCGWAS Resource Report Resource Website 1+ mentions |
QCGWAS (RRID:SCR_006408) | QCGWAS | software resource | Software tools for (automated and manual) quality control of the results of Genome Wide Association Studies. | quality control, genome wide association study, windows, os x, r, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:24395754 | GNU General Public License, v3 or later | OMICS_02203, biotools:qcgwas | https://bio.tools/qcgwas | SCR_006408 | QCGWAS: Quality Control of Genome Wide Association Study results, Quality Control of Genome Wide Association Study | 2026-08-01 12:03:09 | 7 | |||||
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Worcester Polytechnic Institute; Massachusetts; USA Resource Report Resource Website 1+ mentions |
Worcester Polytechnic Institute; Massachusetts; USA (RRID:SCR_006328) | WPI | institution | Private research university in Worcester, Massachusetts, focusing on the instruction and research of technical arts and applied sciences. | University | is parent organization of: Medical Image Visualization and Analysis | grid.268323.e, nlx_155573, ISNI: 0000 0001 1957 0327, Wikidata: Q195046 | https://ror.org/05ejpqr48 | SCR_006328 | Worcester Polytechnic Institute | 2026-08-01 12:03:07 | 1 | |||||||
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ProtEra Resource Report Resource Website 10+ mentions |
ProtEra (RRID:SCR_006434) | commercial organization | An Antibody supplier | nlx_152440 | SCR_006434 | 2026-08-01 12:03:08 | 10 | ||||||||||||
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BC Cancer Foundation Resource Report Resource Website 1+ mentions |
BC Cancer Foundation (RRID:SCR_006428) | BC Cancer Foundation | institution | The fundraising partner of the BC Cancer Agency and the largest charitable funder of cancer research in this province. We enable donors to make contributions to leading-edge research that has a direct impact on improvements to cancer care for patients in British Columbia. By connecting philanthropy and research, we support the revolutionary advances that will help us achieve our vision of a world free from cancer. Our Cause: Supporting world-renowned cancer research in BC One in three British Columbians will be diagnosed with cancer in their lifetime. Because the BC Cancer Agency integrates research and treatment, the process from discovery to treatment is shorter, and researchers are asking questions focused on the needs of patients in BC. The BC Cancer Agency excels at translating exciting discoveries from the researcher''''s bench to the patient''''s bedside. This is the quickest and most effective way to impact cancer care, and it makes the Agency an international leader in cancer research. Our Donors: Leading the way in helping us advance our cause Our unique relationship with the BC Cancer Agency allows our donors to be part of research discoveries made right here in BC. We invite donors to become more connected to the BC Cancer Agency''''s world-leading research that is shaping the future of patient care. At the BC Cancer Foundation we are funding the areas of greatest priority and promise. We know, because we ask the scientists and clinicians at the BC Cancer Agency to identify the priorities and needs that will have the most significant and timely impact on cancer care and treatment. We then partner with our donors to raise the necessary funds in support of this life-saving work. Together we are funding and finding solutions that are having a direct impact on improving care for cancer patients in British Columbia. | british columbia, research | is related to: BC Cancer Agency | Cancer | nlx_151770, ISNI 0000 0001 0745 6244, grid.484001.9 | https://ror.org/03gqhbs95 | SCR_006428 | 2026-08-01 12:03:09 | 2 | |||||||
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Proteome Resources Resource Report Resource Website |
Proteome Resources (RRID:SCR_006468) | commercial organization | THIS RESOURCE IS NO LONGER IN SERVCE, documented on August, 19, 2021. Antibody supplier. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152439 | SCR_006468 | 2026-08-01 12:03:10 | 0 | |||||||||||
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Jalview Resource Report Resource Website 1000+ mentions |
Jalview (RRID:SCR_006459) | Jalview | software resource | A free program for multiple sequence alignment editing, visualisation and analysis that is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation. Jalview has built in DNA, RNA and protein sequence and structure visualisation and analysis capabilities. It uses Jmol to view 3D structures, and VARNA to display RNA secondary structure. | edit, analysis, annotation, multiple sequence alignment, wysiwyg, bio.tools, FASEB list |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite has parent organization: University of Dundee; Scotland; United Kingdom |
BBSRC BBSB16542 | PMID:19151095 DOI:10.1093/bioinformatics/btp033 |
GNU General Public License, v3, Acknowledgement requested | OMICS_00885, biotools:Jalview | https://bio.tools/Jalview, https://sources.debian.org/src/jalview/ | SCR_006459 | 2026-08-01 12:03:10 | 3769 | |||||
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Yeungnam University; North Gyeongsang; South Korea Resource Report Resource Website 1+ mentions |
Yeungnam University; North Gyeongsang; South Korea (RRID:SCR_006575) | university | Private research university located in Gyeongsan, North Gyeongsang, South Korea. University includes colleges of Law and Medicine and teaching hospital. | is parent organization of: Death Domain database | nlx_149484 | http://www.yu.ac.kr/_under/index.html | SCR_006575 | Yeungnam University | 2026-08-01 12:03:12 | 1 | |||||||||
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SRAdb Resource Report Resource Website 10+ mentions |
SRAdb (RRID:SCR_006524) | SRAdb | software resource | Software package to make access to the compilation of metadata from NCBI SRA and tools associated with submission, study, sample, experiment and run much more feasible. This is accomplished by parsing all the NCBI SRA metadata into a SQLite database that can be stored and queried locally. Fulltext search in the package make querying metadata very flexible and powerful. fastq and sra files can be downloaded for doing alignment locally. Beside ftp protocol, the SRAdb has funcitons supporting fastp protocol (ascp from Aspera Connect) for faster downloading large data files over long distance. The SQLite database is updated regularly as new data is added to SRA and can be downloaded at will for the most up-to-date metadata. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: NCBI Sequence Read Archive (SRA) has parent organization: Bioconductor |
PMID:23323543 | Artistic License, v2 | biotools:sradb, OMICS_01032 | https://bio.tools/sradb | SCR_006524 | SRAdb - A compilation of metadata from NCBI SRA and tools | 2026-08-01 12:03:09 | 18 | |||||
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seq crumbs Resource Report Resource Website 1+ mentions |
seq crumbs (RRID:SCR_006486) | seq_crumbs | software resource | A collection of small sequence processing utilities that are modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as input and create a new processed sequence file as output. This design encourages the assembly of the seq_crumbs utilities with Unix pipes to create complex pipelines. | is listed by: OMICtools | Mainly under the, GNU General Public License | OMICS_01075 | SCR_006486 | 2026-08-01 12:03:13 | 9 | |||||||||
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Xavier University of Louisiana; Louisiana; USA Resource Report Resource Website |
Xavier University of Louisiana; Louisiana; USA (RRID:SCR_006483) | XULA | university | A private, coeducational, liberal arts college with the distinction of being the only historically black Roman Catholic institution of higher education located in the Gert Town section of New Orleans, Louisiana, USA. |
is parent organization of: XULA Materials Research - Shared Instrumentation Facilities is parent organization of: LCRC Proteomics Core Facility is parent organization of: LCRC Biospecimen Core is parent organization of: LCRC Adult Stem Cell Core is parent organization of: LCRC Cell Analysis and Immunology Core Facility is parent organization of: LCRC Genomics Core Facility is parent organization of: LCRC Microarray Core is parent organization of: LCRC Morphology and Imaging Core is parent organization of: XULA Major Instrumentation Core is parent organization of: XULA Animal Care Facility is parent organization of: XULA Center for Nanomedicine and Drug Delivery is parent organization of: XULA RCMI Cell and Molecular Biology Core is parent organization of: XULA RCMI Molecular Structure and Modeling Core |
grid.268355.f, nlx_156107, Wikidata:Q390087, ISNI:0000 0000 9679 3586 | https://ror.org/0085d9t86 | SCR_006483 | Xavier University of Louisiana | 2026-08-01 12:03:12 | 0 | ||||||||
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California Digital Library Resource Report Resource Website 1+ mentions |
California Digital Library (RRID:SCR_006481) | CDL | institution | One of the world''s largest digital research libraries that changed the ways that faculty, students, and researchers discover and access information using innovative technology to connect content and communities in ways that enhance teaching, learning, and research. In partnership with the UC libraries, the CDL has continually broken new ground by developing systems linking their users to the vast print and online collections within UC and beyond. Building on the foundations of the Melvyl Catalog, they developed one of the largest online library catalogs in the country. They saved the University millions of dollars by facilitating the co-investment and sharing of materials and services used by libraries across the UC system. They work in partnership with campuses to bring the treasures of their libraries, museums, and cultural heritage organizations to the world. And they continue to explore how services such as digital curation, scholarly publishing, archiving and preservation support research throughout the information lifecycle. | library, digital, collection, catalog |
uses: DataCite is listed by: DataCite has parent organization: University of California; California; USA is parent organization of: UC3 Merritt is parent organization of: DMPTool is parent organization of: eScholarship is parent organization of: EZID is parent organization of: DataUp |
, grid.463323.3, nlx_156041, Wikidata: Q5020447, ISNI: 0000 0001 1957 5136 | https://ror.org/03yrm5c26, https://api.datacite.org/dois?prefix=10.24343 | SCR_006481 | 2026-08-01 12:03:10 | 2 | ||||||||
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MethylSeekR Resource Report Resource Website 50+ mentions |
MethylSeekR (RRID:SCR_006513) | MethylSeekR | software resource | A software package for the discovery of regulatory regions from Bis-seq data. |
is listed by: OMICtools has parent organization: Bioconductor |
GNU General Public License, v2 or greater | OMICS_00607 | SCR_006513 | MethylSeekR - Segmentation of Bis-seq data | 2026-08-01 12:03:13 | 54 | ||||||||
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NCBI Resource Report Resource Website 10000+ mentions |
NCBI (RRID:SCR_006472) | NCBI | nonprofit organization | A portal to biomedical and genomic information. NCBI creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information for the better understanding of molecular processes affecting human health and disease. | biomedical, genomic, molecular biology, health, disease, database, computational biology, bio.tools |
is used by: NIF Data Federation is listed by: NIDDK Information Network (dkNET) is listed by: bio.tools is listed by: Debian is related to: AmiGO is related to: NCBI Viral Genomes is related to: Clone DB is related to: PubReader is related to: OMIA - Online Mendelian Inheritance in Animals is related to: European Nucleotide Archive (ENA) is related to: Plant Co-expression Annotation Resource is related to: METAGENOTE is related to: Phyutility is related to: CaspBase is related to: Prokaryotic Genomes Automatic Annotation Pipeline has parent organization: National Library of Medicine is parent organization of: MedGen is parent organization of: dbSTS is parent organization of: PubMed Health is parent organization of: BLASTP is parent organization of: GQuery is parent organization of: BLASTN is parent organization of: GTEx eQTL Browser is parent organization of: BLASTX is parent organization of: Homology Maps Page is parent organization of: PEDHUNTER is parent organization of: Conserved Domain Database is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: High Throughput Genomic Sequences Division is parent organization of: AceView is parent organization of: dbMHC is parent organization of: dbSNP is parent organization of: Entrez Gene is parent organization of: NCBI Genome is parent organization of: NCBI database of Genotypes and Phenotypes (dbGap) is parent organization of: GenBank is parent organization of: International HapMap Project is parent organization of: IgBLAST is parent organization of: Lowes Syndrome Mutation Database is parent organization of: HomoloGene is parent organization of: Influenza Virus Resource is parent organization of: Distant Regulatory Elements is parent organization of: e-PCR is parent organization of: MapViewer is parent organization of: Primer-BLAST is parent organization of: dbVar is parent organization of: NCBI Taxonomy is parent organization of: NCBI Protein Database is parent organization of: Gene Reference into Function is parent organization of: Protein Clusters is parent organization of: RefSeq is parent organization of: TPA is parent organization of: GENSAT at NCBI - Gene Expression Nervous System Atlas is parent organization of: COBALT: Constraint-based Multiple Alignment Tool is parent organization of: PubMed Central is parent organization of: UniLib is parent organization of: NCBI Structure is parent organization of: PubChem is parent organization of: Anopheles gambiae (African malaria mosquito) genome view is parent organization of: UniGene is parent organization of: NLM Catalog is parent organization of: Entrez GEO Profiles is parent organization of: Nucleotide database is parent organization of: NCBI BioSystems Database is parent organization of: CBLAST is parent organization of: NCBI BioProject is parent organization of: NCBI Probe is parent organization of: PubMed is parent organization of: NCBI BioSample is parent organization of: NCBI Nucleotide is parent organization of: NCBI Structure: Cn3D is parent organization of: NCBI BLAST is parent organization of: IBIS: Inferred Biomolecular Interactions Server is parent organization of: NCBI Sequence Read Archive (SRA) is parent organization of: Gene Expression Omnibus (GEO) is parent organization of: NCBI Popset is parent organization of: PIE the search is parent organization of: Genetic Testing Registry is parent organization of: NCBI Resource List is parent organization of: NCBI dbRBC is parent organization of: NCBI YouTube Channel is parent organization of: NCBI Epigenomics is parent organization of: ClinVar is parent organization of: Genome Reference Consortium is parent organization of: GeneReviews is parent organization of: Molecular Imaging and Contrast Agent Database is parent organization of: Consensus CDS is parent organization of: UniSTS is parent organization of: HIV-1 Human Protein Interaction Database is parent organization of: Assay Guidance Manual is parent organization of: Bookshelf is parent organization of: COG is parent organization of: Gene Expression Omnibus is parent organization of: Molecular Modelling DataBase is parent organization of: Organelle Genome Resources is parent organization of: SKY/M-FISH/CGH is parent organization of: dbEST is parent organization of: JournalReview.org is parent organization of: NCBI GenBank via FTP is parent organization of: PubChem Compound is parent organization of: Molecular Modeling DataBase is parent organization of: Vector Alignment Search Tool is parent organization of: PubChem BioAssay is parent organization of: NCBI Genome Workbench is parent organization of: TBLASTN is parent organization of: TBLASTX is parent organization of: Mega BLAST is parent organization of: Genetic Codes is parent organization of: HIV-1, Human Protein Interaction Database is parent organization of: PubReader is parent organization of: PubChem Substance is parent organization of: OMIA - Online Mendelian Inheritance in Animals is parent organization of: OMIM is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: GeneTests is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: MagicBlast is parent organization of: RefSeq is parent organization of: Sequin is parent organization of: Batch Entrez is parent organization of: Entrez is parent organization of: tbl2asn is parent organization of: Whole Genome Shotgun (WGS) Project is parent organization of: Digital Differential Display (DDD) is parent organization of: BLASTClust is parent organization of: PASC is parent organization of: Open Reading Frame Finder is parent organization of: Genotyping works with: Human Mouse Disease Connection works with: A plasmid Editor works with: Database of genes related to Repeat Expansion Diseases |
Public, The community can contribute to this resource | nif-0000-00139, biotools:ncbi_resources | https://bio.tools/ncbi_resources | http://www.ncbi.nih.gov/ | SCR_006472 | National Center for Biotechnology Information, NCBI - National Center for Biotechnology Information | 2026-08-01 12:03:10 | 25993 | |||||
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Xiamen University; Xiamen; China Resource Report Resource Website |
Xiamen University; Xiamen; China (RRID:SCR_006509) | university | Xiamen University, colloquially known as Xia Da in Mandarin Chinese or Ha Tai in Xiamen dialect, is public research university in Xiamen, Fujian, China with strengths in economics and management, fine arts, law, chemistry, journalism, communication, and mathematics. | is parent organization of: CytoSVM statistics | nlx_64389 | http://www.xmu.edu.cn/english/ | SCR_006509 | XMU | 2026-08-01 12:03:13 | 0 | |||||||||
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University of Picardie Jules Verne; Amiens; France Resource Report Resource Website |
University of Picardie Jules Verne; Amiens; France (RRID:SCR_006540) | UPJV | university | Public university organized into five main faculties. One of the top 60 universities of France. |
is parent organization of: Biobanque de Picardie is parent organization of: RESP ESP charged Database |
nlx_144284 | http://www.u-picardie.fr/jsp/fiche_pagelibre_accueil.jsp?CODE=95546447&LANGUE=1 | SCR_006540 | Université de Picardie Jules Verne, University of Picardie Jules Verne | 2026-08-01 12:03:09 | 0 | ||||||||
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F1000: Faculty of 1000 Post-Publication Peer Review Resource Report Resource Website 10+ mentions |
F1000: Faculty of 1000 Post-Publication Peer Review (RRID:SCR_006537) | F1000 | commercial organization | Service that identifies and evaluates the most important articles in biology and medical research publications. The selection process comprises a peer-nominated global ''Faculty'' of the world''s leading scientists and clinicians who rate the best of the articles they read and explain their importance. Faculty Members and their evaluations are organized into over 40 Faculties (subjects), which are further subdivided into over 300 Sections. On average, 1500 new evaluations are published each month; this corresponds to approximately the top 2% of all published articles in the biological and medical sciences. F1000 is a subscription service paid for by academic and corporate institutions. Users at subscribing institutions automatically receive full access to the F1000 service when using internet facilities provided by their institution. | biology, medicine, biomedical science, clinical, database, peer review, medical research |
is used by: PrePubMed is listed by: FORCE11 is related to: Overleaf has parent organization: Science Navigation Group is parent organization of: F1000 Reports is parent organization of: Faculty of 1000 - YouTube is parent organization of: F1000 Posters is parent organization of: Naturally Selected |
Subscription | nlx_71290, Wikidata: Q5428884, grid.466681.b, ISNI: 0000 0000 8758 3069 | https://ror.org/019tc7185 | http://www.facultyof1000.com/ | SCR_006537 | F1000 Evaluations, Faculty of 1000, F1000 Evaluated Articles | 2026-08-01 12:03:09 | 14 |
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