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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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PhysiMeSS Resource Report Resource Website 1+ mentions |
PhysiMeSS (RRID:SCR_025455) | simulation software, source code, software resource, software application | PhysiCell add-on which allows users to simulate ECM components as agents. PhysiCell addon for extracellular matrix modelling. | Agent-based simulation, extracellular matrix, fibers, extracellular matrix modelling, simulate ECM components, | DOI:10.1101/2023.10.27.564365 | Free, Available for download, Freely available, | SCR_025455 | PhysiCell Microenvironment Structure Simulation | 2026-08-11 09:45:10 | 1 | |||||||||
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University of California at Davis; California; USA Resource Report Resource Website 1+ mentions |
University of California at Davis; California; USA (RRID:SCR_012713) | UCD | institution, university |
is affiliated with: mysamplesize is related to: Alzheimers Disease Genetics Consortium is related to: Influenza Research Database (IRD) is related to: Clinical and Translational Science Awards Consortium has parent organization: University of California; California; USA is parent organization of: University of California Davis Center for Neuroscience is parent organization of: Visible Mouse Project is parent organization of: Subject Library is parent organization of: NeuroMab is parent organization of: Research Network in Early Experience and Brain Development is parent organization of: Computational Infrastructure for Geodynamics is parent organization of: Gene Cloud: Exploring Connections in the Mouse Genome is parent organization of: CompostBin is parent organization of: Kepler is parent organization of: California National Primate Research Center is parent organization of: BrainMaps.org is parent organization of: VAMCA is parent organization of: CLEAVE is parent organization of: Knockout Mouse Project Repository is parent organization of: Cereal Small RNA Database is parent organization of: Stress Induced (DNA) Duplex Destabilization is parent organization of: University of California Davis Center for Comparative Medicine is parent organization of: Metabolomics Fiehn Lab is parent organization of: Critical Assessment of Techniques for Protein Structure Prediction is parent organization of: DIAMOND is parent organization of: ERPLAB is parent organization of: UC Davis Alzheimer's Disease Center is parent organization of: UC Davis Mouse Biology Program is parent organization of: UC Davis School of Veterinary Medicine; California; USA is parent organization of: UC Davis Host-Microbe Systems Biology Core is parent organization of: UC Davis Genome Center Labs and Facilities is parent organization of: UC Davis Crocker Nuclear Laboratory is parent organization of: University of California at Davis Real Time PCR Research and Diagnostics Core Facility is parent organization of: UC Davis Respiratory Disease Immunology Core Laboratory is parent organization of: University of California at Davis Genome Center Proteomics Core Facility is parent organization of: Epidemiology of Chronic Disease in the Oldest Old is parent organization of: Mutant Mouse Resource and Research Center is parent organization of: CTSpedia is parent organization of: National Mouse Metabolic Phenotyping Centers is parent organization of: MMPC-University of California Davis Energy Balance Exercise and Behavior Core is parent organization of: MMPC-University of California Davis Administrative Core is parent organization of: MMPC-University of California Davis Microbiome and Host Response Core is parent organization of: MMPC-University of California Davis Endocrinology and Metabolism Core is parent organization of: MMPC-University of California Davis is parent organization of: MMPC-University of California Davis Animal Care Surgery and Pathology Core is parent organization of: MassBank of North America is parent organization of: Phaff Yeast Culture Collection is parent organization of: ChemRICH is parent organization of: Blood Exposome Database is parent organization of: University of California at Davis Veterinary Medicine Advanced Imaging Core Facility is parent organization of: University of California Davis West Coast Metabolomics Center Core Facility is parent organization of: University of California Davis Center for Molecular and Genomic Imaging Core Facility is parent organization of: University of California Davis Nuclear Magnetic Resonance Core Facility is parent organization of: University of California Davis Advanced Materials Characterization and Testing Laboratory Core Facility is parent organization of: University of California Davis Biological Electron Microscopy Core Facility is parent organization of: University of California Davis Campus Mass Spectrometry Core Facility is parent organization of: University of California Davis DNA Technologies and Expression Analysis Core Facility is parent organization of: University of California Davis Flow Cytometry Shared Resource Laboratory Core Facility is parent organization of: University of California Davis Health In Vivo Translational Imaging Shared Resource Core Facility is parent organization of: University of California Davis Health Molecular Pharmacology Shared Resource Core Facility is parent organization of: University of California Davis Health Immune Modeling, Analysis and Diagnostics Shared Resource Core Facility is parent organization of: University of California Davis Health Genomics Shared Resource Core Facility is parent organization of: University of California Davis Health Biostatistics Shared Resource Core Facility is parent organization of: University of California Davis Health Combinatorial Chemistry and Chemical Biology Shared Resource Core Facility is parent organization of: University of California Davis Health Biorepository Shared Resource Core Facility is parent organization of: University of California at Davis Biological and Agricultural Engineering Shop Core Facility is parent organization of: University of California Davis Comparative Pathology Laboratory Core Facility is parent organization of: UC Davis Health Comprehensive Cancer Center Molecular Pharmacology and Chemical Biology MPCBSR Core Facility is parent organization of: UC Davis Health Comprehensive Cancer Center Mouse Biology Shared Resource MBSR Core Facility is parent organization of: University of California Davis Advanced Materials Characterization and Testing Laboratory AMCaT Core Facility is parent organization of: University of California Davis Contained Research Core Facility |
SCR_012713 | UCDavis, University of California Davis, University of California at Davis, UC Davis | 2026-08-11 09:42:29 | 9 | |||||||||||
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Indiana University School of Medicine Department of Pharmacology and Toxicology Resource Report Resource Website |
Indiana University School of Medicine Department of Pharmacology and Toxicology (RRID:SCR_006501) | IU Pharmacology and Toxicology, IU Pharmacology Toxicology, Indiana University, Department of Pharmacology and Toxicology | data or information resource, department portal, portal, organization portal | Mission of Department of Pharmacology and Toxicology is to perform research to advance understanding of interactions of chemicals and drugs with living systems and to assist in development of new therapeutics and strategies to treat disease. | has parent organization: Indiana University School of Medicine; Indiana; USA | nif-0000-01966 | http://pharmtox.iusm.iu.edu | SCR_006501 | Indiana University School of Medicine; Department of Pharmacology Toxicology, Indiana University School of Medicine; Department of Pharmacology and Toxicology, IU Department of Pharmacology Toxicology, IUSM Dept. of Pharmacology and Toxicology, IUSM Department of Pharmacology Toxicology, IU Department of Pharmacology and Toxicology, IUSM Department of Pharmacology and Toxicology | 2026-08-12 10:49:27 | 0 | ||||||||
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GWAMA Resource Report Resource Website 100+ mentions |
GWAMA (RRID:SCR_006624) | GWAMA | data processing software, data analysis software, software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software tool for meta analysis of whole genome association data. | meta, analysis, genome, association, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Wellcome Trust Centre for Human Genetics |
PMID:20509871 DOI:10.1186/1471-2105-11-288 |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:gwama, OMICS_00235 | https://bio.tools/gwama, https://sources.debian.org/src/gwama/ | http://www.well.ox.ac.uk/GWAMA/ | SCR_006624 | Genome-Wide Association Meta Analysis | 2026-08-12 10:49:29 | 177 | ||||
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Louisiana State University School of Medicine Health Sciences Center Department of Pharmacology and Experimental Therapeutics Resource Report Resource Website |
Louisiana State University School of Medicine Health Sciences Center Department of Pharmacology and Experimental Therapeutics (RRID:SCR_006504) | data or information resource, department portal, portal, organization portal | Department of Pharmacology and Experimental Therapeutics faculty provide professional instruction in schools of Medicine, Dentistry, Nursing, Allied Health and Graduate Studies. Department offers Ph.D. and M.D./Ph.D. degrees and graduate and post doctoral training. | has parent organization: Louisiana State University School of Medicine; Louisiana; USA | nif-0000-06734 | SCR_006504 | LSUHSC School of Medicine at New Orleans; Department of Pharmacology and Experimental Therapeutics, LSUHSC School of Medicine Department of Pharmacology and Experimental Therapeutics, LSUHSC Department of Pharmacology and Experimental Therapeutics | 2026-08-12 10:49:27 | 0 | ||||||||||
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GMD Resource Report Resource Website 100+ mentions |
GMD (RRID:SCR_006625) | GMD | service resource, data or information resource, database, data access protocol, software resource, web service | It facilitates the search for and dissemination of mass spectra from biologically active metabolites quantified using Gas chromatography (GC) coupled to mass spectrometry (MS). Use the Search Page to search for a compound of your interest, using the name, mass, formula, InChI etc. as query input. Additionally, a Library Search service enables the search of user submitted mass spectra within the GMD. In parallel to the library search, a prediction of chemical sub-groups is performed. This approach has reached beta level and a publication is currently under review. Using several sub-group specific Decision Trees (DTs), mass spectra are classified with respect to the presence of the chemical moieties within the linked (unknown) compound. Prediction of functional groups (ms analysis) facilitates the search of metabolites within the GMD by means of user submitted GC-MS spectra consisting of retention index (n-alkanes, if vailable) and mass intensities ratios. In addition, a functional group prediction will help to characterize those metabolites without available reference mass spectra included in the GMD so far. Instead, the unknown metabolite is characterized by predicted presence or absence of functional groups. For power users this functionality presented here is exposed as soap based web services. Functional group prediction of compounds by means of GC-EI-MS spectra using Microsoft analysis service decision trees All currently available trained decision trees and sub-structure predictions provided by the GMD interface. Table describes the functional group, optional use of an RI system, record date of the trained decision tree, number of MSTs with proportion of MSTs linked to metabolites with the functional group present for each tree. Average and standard deviation of the 50-fold CV error, namely the ratio false over correctly sorted MSTs in the trained DT, are listed. The GMD website offers a range of mass spectral reference libraries to academic users which can be downloaded free of charge in various electronic formats. The libraries are constituted by base peak normalized consensus spectra of single analytes and contain masses in the range 70 to 600 amu, while the ubiquitous mass fragments typically generated from compounds carrying a trimethylsilyl-moiety, namely the fragments at m/z 73, 74, 75, 147, 148, and 149, were excluded. | drug, expression, functional, gas chromatography, gene, general chemistry databases, bioinformatic, biological extract, biology, biotechnology, compound, genomic, herbicide, mass spectra, mass spectrometry, metabolism, metabolite, metabolomics, organism, profiling, protein, spectral, system, FASEB list | has parent organization: Max Planck Institute of Molecular Plant Physiology; Golm; Germany | PMID:15613389 PMID:15733837 PMID:18501684 PMID:20526350 |
r3d100011046, nif-0000-21180 | http://csbdb.mpimp-golm.mpg.de/csbdb/gmd/gmd.html, https://doi.org/10.17616/R3MC9K | SCR_006625 | Golm Metabolome Data Base, The Golm Metabolome Database, Golm Metabolome Database | 2026-08-12 10:49:31 | 192 | ||||||
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University of British Columbia Department of Pharmacology Resource Report Resource Website |
University of British Columbia Department of Pharmacology (RRID:SCR_006466) | UBC Department of Anesthesiology Pharmacology and Therapeutics | data or information resource, department portal, portal, organization portal | University of British Columbia Department of Anesthesiology, Pharmacology and Therapeutics is an amalgamation of three very important areas of medicine: anesthesiology, pharmacology, and therapeutics. Although we are a joined department with many common interests, each of the sections named above, bring special areas of expertise and learning to the mix. We welcome your interest in our department and look forward to the recruitment of outstanding anesthesiology residents, pharmacology grad students, anesthesiology fellows, and pharmacology post-graduate students. Information on the residency program and postgraduate programs can be found on the appropriate link. Our department now extends across the Province of British Columbia. | has parent organization: University of British Columbia; British Columbia; Canada | nif-0000-02136 | SCR_006466 | UBC Department of Anesthesiology Pharmacology Therapeutics, University of British Columbia Department of Anesthesiology Pharmacology and Therapeutics | 2026-08-12 10:49:28 | 0 | |||||||||
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ESPript 2.2 Resource Report Resource Website 100+ mentions |
ESPript 2.2 (RRID:SCR_006587) | ESPript | service resource, production service resource, software application, data processing software, analysis service resource, software resource, data analysis service | A utility, whose output is a PostScript file of aligned sequences with graphical enhancements. Its main input is an ascii file of pre-aligned sequences. Optional files allow further rendering. The program calculates a similarity score for each residue of the aligned sequences. The output shows: * Secondary Structures * Aligned sequences * Similarities * Accessibility * Hydropathy * User-supplied markers * Intermolecular contacts In addition, similarity score can be written in the bfactor column of a pdb file, to enable direct display of highly conserved areas. You can run ESPript from this server with the HTML interface. It is configured for a maximum of 1,000 sequences. Links to webESPript * ENDscript: you can upload a PDB file or enter a PDB code such as 1M85. The programs DSSP and CNS are executed via the interface, so as to obtain an ESPript figure with a lot of structural information (secondary structure elements, intermolecular contacts). You can also find homologous sequences with a BLAST search, perform multiple sequence alignments with MULTALIN or CLUSTALW and create an image with BOBSCRIPT or MOLSCRIPT to show similarities on your 3D structure. * ProDom: you can enter a sequence identifier to find homologous domains, perform multiple sequence alignments with MULTALIN and click on the link to ESPript. * Predict Protein: you can receive a mail in text (do not use the HTML option when you submit your request in Predict Protein) with aligned sequences and numerous information including secondary structure prediction. Click on a special html link to upload your mail in ESPript. * NPS(at): you can execute the programs BLAST and CLUSTALW to obtain multiple alignments. You can predict secondary structure elements and click on the link to ESPript. This program started in the laboratory of Dr Richard Wade at the Institut de Biologie Structurale, Grenoble. It moved later to the Laboratory of Molecular Biophysics in Oxford, then to the Institut de Pharmacologie et de Biologie Structurale in Toulouse. It is now developed in the Laboratoire de BioCristallographie of Dr Richard Haser, Institut de Biologie et de Chimie des Prot��������ines, Lyon and in the Laboratoire de Biologie Mol��������culaire et de Relations Plantes-Organismes, group of Dr Daniel Kahn, Institut National de la Recherche Agronomique de Toulouse. | postscript, aligned sequence, sequencing, blast, protein | has parent organization: Institute of Biology and Chemistry of Proteins; Lyon; France | PMID:10320398 PMID:12824317 |
Free for academic use, Fee for commercial users, Licenses for accompanying programs used in ENDscript must be requested separately. | nif-0000-30499 | http://genopole.toulouse.inra.fr/ESPript | SCR_006587 | Easy Sequencing in Postscript | 2026-08-12 10:49:28 | 395 | |||||
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Public Health Genomics Resource Report Resource Website 500+ mentions |
Public Health Genomics (RRID:SCR_006462) | portal, data or information resource, podcast, narrative resource, training resource, radio, organization portal | The Office of Public Health Genomics (OPHG) aims to integrate genomics into public health research, policy, and programs. Doing so could improve interventions designed to prevent and control the country''s leading chronic, infectious, environmental, and occupational diseases. OPHG''s efforts focus on conducting population-based genomic research, assessing the role of family health history in disease risk and prevention, supporting a systematic process for evaluating genetic tests, translating genomics into public health research and programs, and strengthening capacity for public health genomics in disease prevention programs. Goals: To improve public health interventions of diseases of major public health importance, including chronic, infectious, environmental, and occupational diseases, through six major initiatives: * Evaluation of Genomic Applications in Practice and Prevention (EGAPP), * Human Genome Epidemiology Network (HuGENet), * NHANES Collaborative Genomics Project, * Family History Public Health Initiative, * Genomics Translation Research and Programs, and, * Genomic Applications in Practice and Prevention Network (GAPPNet). | environmental, genetics, chronic, disease, genomic, health, infectious, occupational, prevention, research | has parent organization: Centers for Disease Control and Prevention | nif-0000-10186 | SCR_006462 | Genomics | 2026-08-12 10:49:26 | 885 | |||||||||
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Wordpress ePub Plugin Resource Report Resource Website |
Wordpress ePub Plugin (RRID:SCR_006342) | data or information resource, narrative resource, blog, software resource | Martin Fenner''s blog is about a WordPress plugin that he created that automatically creates ePub files from blog posts - they are created in the background when you save a blog post. The plugin can be installed directly from your WordPress installation. For now the plugin, ePub Export, only stores the text and images, but the next version should allow embedding of all kinds of files, most importantly data. ePub is a very interesting document format for scholarly publishing and has several advantages over PDF, including: * ePub can be used for all steps in the creation of a scholarly document, including data collection, authoring, annotating and peer review. There is no need for time-consuming and expensive format conversions. Currently most manuscripts are submitted in Microsoft Word or LateX formats, and then converted first to XML and then to HTML and PDF. Metadata such as author identifiers, digital object identifiers and semantic information can be added early on and don''t get lost in a format conversion. * ePub makes it easy to include supplementary material, e.g. video and other multimedia content, the datasets used in the publication (particularly the data used for tables and figures), all cited references in BibTeX format, etc. * ePub is much better suited for reading on mobile devices, as the format allows reflowing of content. Most articles today are printed from the PDF and then read, but this behavior is rapidly changing. | epub, export | has parent organization: PLoS Blogs | nif-0000-06733 | SCR_006342 | 2026-08-12 10:49:26 | 0 | ||||||||||
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Global Proteome Machine Database (GPM DB) Resource Report Resource Website 100+ mentions |
Global Proteome Machine Database (GPM DB) (RRID:SCR_006617) | The GPM | service resource, data or information resource, database, software resource, software application, data processing software, data repository, storage service resource, data analysis software | The Global Proteome Machine Organization was set up so that scientists involved in proteomics using tandem mass spectrometry could use that data to analyze proteomes. The projects supported by the GPMO have been selected to improve the quality of analysis, make the results portable and to provide a common platform for testing and validating proteomics results. The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. This database has been integrated into GPM server pages, allowing users to quickly compare their experimental results with the best results that have been previously observed by other scientists. | mass spectrometry, pattern, peptide, protein, proteome, scientist, spectra, tandem, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
r3d100010883, nif-0000-10455 | https://www.thegpm.org/GPMDB/index.html, https://researchdata.ands.org.au/gpm-global-proteome-machine-database/11342, https://doi.org/10.17616/R30C90 | SCR_006617 | GPM, The Global Proteome Machine Organization: Proteomics Database and Open Source Software, Global Proteome Machine Database, GPM DB, The Global Proteome Machine Database, The Global Proteome Machine, Global Proteome Machine Database (GPM DB), The Global Proteome Machine Organization | 2026-08-12 10:49:31 | 282 | |||||||
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Anxiety Disorders Association of America Resource Report Resource Website 1+ mentions |
Anxiety Disorders Association of America (RRID:SCR_006578) | ADAA | portal, data or information resource, funding resource, disease-related portal, topical portal, patient-support portal | The Anxiety Disorders Association of America (ADAA) is a national nonprofit organization dedicated to the prevention, treatment, and cure of anxiety disorders and to improving the lives of all people who suffer from them. It is the leader in education, training, and research for anxiety and stress-related disorders. ADAA leads the way, improving the lives of millions of people: * Promotes professional and public awareness of anxiety and related disorders and their impact on people''s lives. * Encourages the advancement of scientific knowledge about causes and treatment of anxiety and related disorders. * Links people who need treatment with the health care professionals who provide it. * Helps people find appropriate treatment and develop self-help skills. * Works to reduce the stigma surrounding anxiety and related disorders. ADAA was founded in 1980 as the Phobia Society of America by a diverse group of clinicians and patients. The term anxiety disorder had not yet been coined. Most anxiety disorders were simply called phobias. That changed as researchers discovered links between panic attacks and abnormal blood flow in the brain, learned that anxiety disorders are associated with pervasive social and health consequences, and discovered and tested various therapies and medications to treat anxiety disorders. ADAA adopted its new name in 1990 to reflect the changing and growing field. Over the years ADAA has launched several national educational campaigns to promote awareness about anxiety disorders and encourage people to seek treatment. ADAA has also funded more than $1.5 million in anxiety disorder research. Today ADAA continues to be the voice for those affected by anxiety and anxiety-related disorders. The organization is frequently cited by the media and also provides information and treatment referrals to tens of thousands each year by phone, e-mail, and through this website. | anxiety, anxiety disorder, phobia, human, phobic disorder, one mind ptsd | nlx_143825 | SCR_006578 | Phobia Society of America | 2026-08-12 10:49:29 | 3 | |||||||||
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BioGrid Australia Resource Report Resource Website 100+ mentions |
BioGrid Australia (RRID:SCR_006334) | BioGrid Australia | service resource, data or information resource, production service resource, database, analysis service resource, data analysis service | A federated data sharing platform and infrastructure that provides access to real-time clinical, imaging and biospecimen data across jurisdictions, institutions and diseases. The web-based platform provides a secure infrastructure that advances health research by linking privacy-protected and ethically approved data among a wide network of health collaborators. Access to de-identified health records data is granted to authorized researchers after an application process so patient privacy and intellectual property are protected. BioGrid Australia''s approved researchers are provided access to multiple institutional databases, via the BioGrid interface, preventing gaps in patient records and research analysis. This legal and ethical arrangement with participating collaborators allows BioGrid to connect data through a common platform where data governance and access is managed by a highly skilled team. Data governance, security and ethics are at the core of BioGrid''s federated data sharing platform that securely links patient level clinical, biospecimen, genetic and imaging data sets across multiple sites and diseases for the purpose of medical research. BioGrid''s infrastructure and data management strategies address the increasing need by authorized researchers to dynamically extract and analyze data from multiple sources whilst protecting patient privacy. BioGrid has the capability to link data with other datasets, produce tailored reports for auditing and reporting and provide statistical analysis tools to conduct more advanced research analysis. In the health sector, BioGrid is a trusted independent virtual real-time data repository. Government investment in BioGrid has facilitated a combination of technology, collaboration and ethics approval processes for data sharing that exist nowhere else in the world. | endocrinology, neuroscience, imaging, medicine, oncology, population, cancer, cystic fibrosis, diabetes, pet, mri, clinical, respiratory, health, epilepsy, neuropsychiatry, data sharing, FASEB list | Cancer, Diabetes, Epilepsy, Cystic fibrosis, Respiratory disease, Multiple Sclerosis, Stroke, Bone density | Closed; Authorized researchers only. | nlx_152036, r3d100012476 | https://doi.org/10.17616/R3921N | http://www.biogrid.org.au/wps/portal | SCR_006334 | BioGrid Australia Limited | 2026-08-12 10:49:24 | 297 | |||||
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Centroid Trajectory Analysis Resource Report Resource Website 10+ mentions |
Centroid Trajectory Analysis (RRID:SCR_006331) | CeTrAn | data processing software, data analysis software, software resource, software application | Open source software written in R that tracks a single animal walking in a homogenous environment (Buritrack) and analyzes its trajectory. It extracts eleven metrics and includes correlation analyses and a Principal Components Analysis (PCA). It was designed to be easily customized to personal requirements. In combination with inexpensive hardware, these tools can readily be used for teaching and research purposes. Buritrack is a program to track individual Drosophila fruit flies online with any camera as they walk in Buridan's paradigm. The program extracts the coordinate locations of the fly and stores them in a text file. | trajectory, buridan, principal components analysis, correlation analysis, buridan's paradigm, locomotion, software, tracking, drosophila |
has parent organization: Free University of Berlin; Berlin; Germany has parent organization: SourceForge |
Swiss National Science Foundation PA00P3_124141; EPSRC EP/F030673/1 |
PMID:22912692 | Open source, Available for Mac and PC, Source code available for download | nlx_152033 | SCR_006331 | CeTrAn: centroid trajectory analysis | 2026-08-12 10:49:24 | 11 | |||||
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Immune Epitope Database and Analysis Resource (IEDB) Resource Report Resource Website 500+ mentions |
Immune Epitope Database and Analysis Resource (IEDB) (RRID:SCR_006604) | IEDB | service resource, production service resource, data repository, analysis service resource, storage service resource, data analysis service | Repository contains antibody/B cell and T cell epitope information and epitope prediction and analysis tools. Immune epitopes are defined as molecular structures recognized by specific antigen receptors of the immune system, namely antibodies, B cell receptors, and T cell receptors. Immune epitopes from infectious diseases, excluding HIV, and immune-mediated diseases and the accompanying biological information are included. | human, non-human primate, rodent, pig, cat, non-human animal, t cell, b cell, epitope, infectious disease, major histocompatibility complex, bio.tools, FASEB list |
is listed by: NIH Data Sharing Repositories is listed by: Debian is listed by: bio.tools is affiliated with: AIRR Knowledge Commons has parent organization: NIAID has organization facet: La Jolla Institute for Immunology |
niad | PMID:39558162 | open | nif-0000-03017, biotools:iedb, r3d100012702 | https://nextgen-tools.iedb.org/, https://doi.org/10.17616/R3X217 | SCR_006604 | Immune Epitope Database and Analysis Resource, , IEDB | 2026-08-12 10:49:29 | 622 | ||||
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Transverse Myelitis Association Resource Report Resource Website 1+ mentions |
Transverse Myelitis Association (RRID:SCR_006523) | TMA | portal, data or information resource, disease-related portal, training resource, topical portal, patient-support portal, meeting resource | The Transverse Myelitis Association was established in 1994 as an organization dedicated to advocacy for those who have these rare neuroimmunologic diseases. It was incorporated as a not-for-profit organization in 1996. It facilitates support and networking opportunities amongst families; provides educational information; functions as a clearinghouse for articles and research literature; and investigates, advocates for and supports research and innovative treatment efforts. Transverse Myelitis is a rare neurological disorder that is part of a spectrum of neuroimmunologic diseases of the central nervous system. Other disorders in this spectrum include, Acute Disseminated Encephalomyelitis (ADEM), Optic Neuritis, and Neuromyelitis Optica (Devic''s disease). The membership of The Transverse Myelitis Association includes persons with all of these disorders, their family members and caregivers and the medical professionals who treat people with these disorders. The TMA publishes a newsletter for our members twice a year, which contains articles by physicians and health care providers. There are also articles written by people with the rare neuroimmunologic disorders. A membership directory is published and distributed annually. The TMA assists in the development of local support groups and is involved in various fund-raising efforts, such as Reading for Rachel, to raise awareness and funds for research. The TMA supports and conducts various symposiums and workshops involving both professionals and patients for the exchange of information regarding research and treatment strategies for persons with the rare neuroimmunologic disorders of the central nervous system. | nlx_69007 | SCR_006523 | 2026-08-12 10:49:29 | 1 | |||||||||||
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Plant Organelles Database Resource Report Resource Website 1+ mentions |
Plant Organelles Database (RRID:SCR_006520) | PODB, PODB2 | video resource, service resource, data or information resource, image collection, database, narrative resource, experimental protocol, data repository, storage service resource | Database of images, movies, and protocols to promote a comprehensive understanding of plant organelle dynamics, including organelle function, biogenesis, differentiation, movement, and interactions with other organelles. It consists of 5 individual parts, ''Perceptive Organelles Database'', ''The Organelles Movie Database'', ''The Organellome Database'', ''The Functional Analysis Database'', and ''External Links to other databases and Web pages''. All the data and protocols in ''The Organelle Movie Database'', ''The Organellome Database'' and ''The Functional Analysis Database'' are populated by direct submission of experimentally determined data from plant researchers. Your active contributions by submission of data and protocols to our database would also be appreciated. * Perceptive Organelles Database: This database contains images and movies of organelles in various tissues during different developmental stages in response to environmental stimuli. * Organelles Movie Database: This database contains time-lapse images, Z slices and projection images of organelles in various tissues during different developmental stages, visualized using fluorescent and non-fluorescent probes. * Organellome Database: This database contains images for cellular structures that are composed of organelle images in various tissues during different developmental stages, visualized with fluorescent and non-fluorescent probes. * Functional Analysis Database: This database is a collection of protocols for plant organelle research. * External Links: Access to biological databases. | organelle, developmental stage, environmental stimuli, development, environment, stimulus, biochemical assay, nucleic acid, protein, gene expression, genome mapping, histology, tissue isolation, organelle isolation, plant growth, maintenance, visualization, observation, plant organelle, movement, division, subcellular positioning, behavior, external stimuli, green fluorescent protein, biogenesis, differentiation, interaction |
is related to: Plant Organelles World has parent organization: National Institute for Basic Biology; Okazaki; Japan |
Japanese Ministry of Education Culture Sports Science and Technology MEXT 16085101; Japan Society for the Promotion of Science 228052 |
PMID:21115470 PMID:19755394 PMID:17932059 |
Free for scientific and educational use provided the contributor and the Organellome Database and the Organelles Movie Database are properly credited. If you wish to use commercially, Please contact the contributors of the corresponding images and movies for permission. | nlx_151998, r3d100011300 | https://doi.org/10.17616/R3933R | SCR_006520 | Plant Organelles Database 2 | 2026-08-12 10:49:28 | 7 | ||||
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Pig Genome Database Resource Report Resource Website |
Pig Genome Database (RRID:SCR_006367) | PGD | service resource, data or information resource, production service resource, database, analysis service resource, data analysis service | Database facilitating information integration and mining within the pig and across species of all genomics / genetics research results accumulated over the years including pig gene expression, quantitative trait loci (QTL), candidate gene, and whole genome association study (WGAS) results. The key functions developed so far include pig gene pages (a centralized gene search tool), a local copy of Biomart (for customizable genome information queries), genome feature alignment tools (Pig QTLdb and Gbrowse), integrated gene expression information (ANEXDB and ESTdb), a dedicated pig genome and gene set BLAST server, and virtual comparative map database and tools (VCmap). By developing the PGD, it is our aim to collaboratively utilize existing databases and tools via networked functions, such as web services, database API, etc., to maximize the potential of all related databases through the PGD implementation. | gene expression, quantitative trait loci, candidate gene, whole genome association study, genome, chromosome, dna, trait, marker | has parent organization: NAGRP Bioinformatics Coordination Program | United States Department of Agriculture | nlx_152113 | SCR_006367 | 2026-08-12 10:49:25 | 0 | ||||||||
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Brodmann's Interactive Atlas Resource Report Resource Website 1+ mentions |
Brodmann's Interactive Atlas (RRID:SCR_006368) | data or information resource, atlas, mri d image | An atlas that facilitates fMRI analysis understanding by providing access to all of the functions that have been associated with each of the 52 Brodmann's areas or corresponding gyri. Links to main publications supporting the findings are provided in PubMed ID format. Brodmann's areas with similar functions and locations have been collapsed into a single page. The word left or right has been added indicating a lateralized function. All the abstracts published on PubMed on fMRI and brain PET studies in which the Brodmann's area or its anatomical correlate were mentioned have been reviewed up to August 2008. Abstracts with poorly described experimental methods or findings clearly conflicting with established knowledge provided by the clinical model were excluded. Studies on patients were also excluded. | neuroanatomy, fmri, interactive, mri, pet, brain, brodmann's areas, brodmann partition scheme region, cerebral cortex, function, brain activation, atlas | fMRI consulting | nlx_152117 | SCR_006368 | Broadmann's Interactive Atlas | 2026-08-12 10:49:27 | 3 | |||||||||
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MGI GO Browser Resource Report Resource Website 1+ mentions |
MGI GO Browser (RRID:SCR_006489) | MGI GO Browser | service resource, data or information resource, production service resource, database, analysis service resource, data analysis service | With the MGI GO Browser, you can search for a GO term and view all mouse genes annotated to the term or any subterms. You can also browse the ontologies to view relationships between terms, term definitions, as well as the number of mouse genes annotated to a given term and its subterms. The MGI GO browser directly accesses the GO data in the MGI database, which is updated nightly. Platform: Online tool | gene, ontology, browser, molecular function, biological process, cellular component, ontology or annotation browser, ontology or annotation search engine, ontology or annotation visualization |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Mouse Genome Informatics (MGI) |
Free for academic use | nlx_149104 | SCR_006489 | 2026-08-12 10:49:27 | 8 |
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