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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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BluePyOpt Resource Report Resource Website 10+ mentions |
BluePyOpt (RRID:SCR_014753) | simulation software, software application, software resource | An extensible framework for data-driven model parameter optimization that wraps and standardizes several existing open-source tools. BluePyOpt abstracts the optimization and evaluation tasks into various reusable and flexible discrete elements according to established best-practices. It also provides methods for setting up both small- and large-scale optimizations on a variety of platforms. | python, optimization, framework, library, brain, model parameter, neuroscience | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | European Union FP7 604102 | Acknowledgement requested | http://www.nitrc.org/projects/bluepyopt/ | SCR_014753 | Blue Brain Python Optimization Library, Blue Brain Python Optimisation Library (BluePyOpt), Blue Brain Python Optimisation Library | 2026-09-19 12:53:01 | 31 | |||||||
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Integrated Software Resource Report Resource Website |
Integrated Software (RRID:SCR_004745) | data or information resource, database | A virtual database currently indexing software and tools from the SciCrunch Registry, Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC), Visiome Platform, Cerebellar Platform, Brain Machine Interface Platform, and Genetic Analysis Software (GAS). | database, tool, software, integrated |
is used by: NIF Data Federation is listed by: Genetic Analysis Software is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Visiome Platform is related to: Cerebellar Platform is related to: Brain Machine Interface Platform has parent organization: Integrated |
Data are licensed by their respective owners, Use and distribution is subject to the Terms of Use by the original resource | nlx_75188 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-10 http://neuinfo.org/nif/nifgwt.html?query=nlx_75188, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_75188-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-10 | SCR_004745 | NIF Integrated Software, NIF Integrated Software View, NIF Software, Integrated Software View | 2026-09-19 12:56:46 | 0 | |||||||
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Penn Hippocampus Atlas Resource Report Resource Website 1+ mentions |
Penn Hippocampus Atlas (RRID:SCR_000421) | Penn Hippocampus Atlas | atlas, data or information resource | Atlas of segmented and normalized high-resolution postmortem MRI of the human hippocampus. Additional data (raw images) is available through the SCM link. It requires knowing how to use CVS. | magnetic resonance, nifti, hippocampus, mri, postmortem |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Pennsylvania; Philadelphia; USA |
NIA AG027785; NINDS NS061111; NINDS NS058386; NINDS NS045839 |
PMID:18840532 | Free, Available for download, Freely available | nlx_155920 | SCR_000421 | 2026-09-19 12:56:26 | 2 | ||||||
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Licensing issues in software and data Resource Report Resource Website |
Licensing issues in software and data (RRID:SCR_000411) | NITRC Licensing | data or information resource, discussion, narrative resource | Discussion forum on licensing issues in software and data. All are invited to participate or join the project and contribute. A listing of software licenses are available. | license |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Free, Available for download, Freely available | nlx_155651 | SCR_000411 | 2026-09-19 12:56:26 | 0 | ||||||||
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Kymata Atlas Resource Report Resource Website 1+ mentions |
Kymata Atlas (RRID:SCR_000269) | atlas, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An online atlas of neural function, maintained by Cambridge University and the MRC Cognition and Brain Sciences Unit (CBSU). | data visualization software, database, adult human, brain, function, computational model, sensory information, post-synaptic dendritic current |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Cambridge; Cambridge; United Kingdom has parent organization: MRC Cognition and Brain Sciences Unit |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_158115 | http://www.nitrc.org/projects/kymata_atlas | SCR_000269 | 2026-09-19 12:56:25 | 1 | ||||||||
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BraVa Resource Report Resource Website 1+ mentions |
BraVa (RRID:SCR_001407) | BraVa | data or information resource, database | A database of digital reconstructions of the human brain arterial arborizations from 61 healthy adult subjects along with extracted morphological measurements. The arterial arborizations include the six major trees stemming from the circle of Willis, namely: the left and right Anterior Cerebral Arteries (ACAs), Middle Cerebral Arteries (MCAs), and Posterior Cerebral Arteries (PCAs). | digital reconstruction, morphometric analysis, cerebrum, arterial vasculature, magnetic resonance angiography, adult human, morphology, artery, arborization, circle of willis, cerebral artery, male, female, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Bravissima has parent organization: George Mason University: Krasnow Institute for Advanced Study |
Healthy | NINDS NS39600; NIBIB EB001955; NINDS NS061770; NIMH P20 MH52176 |
PMID:23727319 | Free, Freely Available | nlx_152630 | http://www.nitrc.org/projects/breva | SCR_001407 | 2026-09-19 12:56:30 | 8 | ||||
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MIRIAD Resource Report Resource Website 50+ mentions |
MIRIAD (RRID:SCR_002422) | MIRIAD | data or information resource, database | A database of volumetric MRI brain-scans of 46 Alzheimer's sufferers and 23 healthy elderly people. Many scans were collected of each participant at intervals from 2 weeks to 2 years, the study was designed to investigate the feasibility of using MRI as an outcome measure for clinical trials of Alzheimer's treatments. It includes a total of 708 scans and should be of particular interest for work on longitudinal biomarkers and image analysis. | magnetic resonance, late adult human, longitudinal, mri, mini mental state examination, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: XNAT - The Extensible Neuroimaging Archive Toolkit has parent organization: University College London; London; United Kingdom |
Alzheimer's disease, Healthy, Late adult human | UK Alzheimers Society ; GlaxoSmithKline ; MRC MR/J014257/1; EPSRC EP/H046410/1 ; Comprehensive Biomedical Research Centre Strategic Investment Award Ref. 168 ; National Institute for Health Research |
PMID:23274184 | Free, Available for download, Freely available | nlx_155795 | http://www.nitrc.org/projects/miriad | SCR_002422 | MIRIAD dataset, MIRIAD XNAT database, MIRIAD database, Minimal Interval Resonance Imaging in Alzheimer's Disease, Minimal Interval Resonance Imaging in Alzheimer's Disease - public dataset | 2026-09-19 12:56:36 | 53 | |||
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Integrated Manually Extracted Annotation Resource Report Resource Website |
Integrated Manually Extracted Annotation (RRID:SCR_008876) | Integrated MEA, Integrated LinkOut, Manually Extracted Annotation, | data or information resource, database | A virtual database of annotations made by 50 database providers (April 2014) - and growing (see below), that map data to publication information. All NIF Data Federation sources can be part of this virtual database as long as they indicate the publications that correspond to data records. The format that NIF accepts is the PubMed Identifier, category or type of data that is being linked to, and a data record identifier. A subset of this data is passed to NCBI, as LinkOuts (links at the bottom of PubMed abstracts), however due to NCBI policies the full data records are not currently associated with PubMed records. Database providers can use this mechanism to link to other NCBI databases including gene and protein, however these are not included in the current data set at this time. (To view databases available for linking see, http://www.ncbi.nlm.nih.gov/books/NBK3807/#files.Databases_Available_for_Linking ) The categories that NIF uses have been standardized to the following types: * Resource: Registry * Resource: Software * Reagent: Plasmid * Reagent: Antibodies * Data: Clinical Trials * Data: Gene Expression * Data: Drugs * Data: Taxonomy * Data: Images * Data: Animal Model * Data: Microarray * Data: Brain connectivity * Data: Volumetric observation * Data: Value observation * Data: Activation Foci * Data: Neuronal properties * Data: Neuronal reconstruction * Data: Chemosensory receptor * Data: Electrophysiology * Data: Computational model * Data: Brain anatomy * Data: Gene annotation * Data: Disease annotation * Data: Cell Model * Data: Chemical * Data: Pathways For more information refer to Create a LinkOut file, http://neuinfo.org/nif_components/disco/interoperation.shtm Participating resources ( http://disco.neuinfo.org/webportal/discoLinkoutServiceSummary.do?id=4 ): * Addgene http://www.addgene.org/pgvec1 * Animal Imaging Database http://aidb.crbs.ucsd.edu * Antibody Registry http://www.neuinfo.org/products/antibodyregistry/ * Avian Brain Circuitry Database http://www.behav.org/abcd/abcd.php * BAMS Connectivity http://brancusi.usc.edu/ * Beta Cell Biology Consortium http://www.betacell.org/ * bioDBcore http://biodbcore.org/ * BioGRID http://thebiogrid.org/ * BioNumbers http://bionumbers.hms.harvard.edu/ * Brain Architecture Management System http://brancusi.usc.edu/bkms/ * Brede Database http://hendrix.imm.dtu.dk/services/jerne/brede/ * Cell Centered Database http://ccdb.ucsd.edu * CellML Model Repository http://www.cellml.org/models * CHEBI http://www.ebi.ac.uk/chebi/ * Clinical Trials Network (CTN) Data Share http://www.ctndatashare.org/ * Comparative Toxicogenomics Database http://ctdbase.org/ * Coriell Cell Repositories http://ccr.coriell.org/ * CRCNS - Collaborative Research in Computational Neuroscience - Data sharing http://crcns.org * Drug Related Gene Database https://confluence.crbs.ucsd.edu/display/NIF/DRG * DrugBank http://www.drugbank.ca/ * FLYBASE http://flybase.org/ * Gene Expression Omnibus http://www.ncbi.nlm.nih.gov/geo/ * Gene Ontology Tools http://www.geneontology.org/GO.tools.shtml * Gene Weaver http://www.GeneWeaver.org * GeneDB http://www.genedb.org/Homepage * Glomerular Activity Response Archive http://gara.bio.uci.edu * GO http://www.geneontology.org/ * Internet Brain Volume Database http://www.cma.mgh.harvard.edu/ibvd/ * ModelDB http://senselab.med.yale.edu/modeldb/ * Mouse Genome Informatics Transgenes ftp://ftp.informatics.jax.org/pub/reports/MGI_PhenotypicAllele.rpt * NCBI Taxonomy Browser http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html * NeuroMorpho.Org http://neuromorpho.org/neuroMorpho * NeuronDB http://senselab.med.yale.edu/neurondb * SciCrunch Registry http://neuinfo.org/nif/nifgwt.html?tab=registry * NIF Registry Automated Crawl Data http://lucene1.neuinfo.org/nif_resource/current/ * NITRC http://www.nitrc.org/ * Nuclear Receptor Signaling Atlas http://www.nursa.org * Olfactory Receptor DataBase http://senselab.med.yale.edu/ordb/ * OMIM http://omim.org * OpenfMRI http://openfmri.org * PeptideAtlas http://www.peptideatlas.org * RGD http://rgd.mcw.edu * SFARI Gene: AutDB https://gene.sfari.org/autdb/Welcome.do * SumsDB http://sumsdb.wustl.edu/sums/ * Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat http://www.temporal-lobe.com/ * The Cell: An Image Library http://www.cellimagelibrary.org/ * Visiome Platform http://platform.visiome.neuroinf.jp/ * WormBase http://www.wormbase.org * YPED http://medicine.yale.edu/keck/nida/yped.aspx * ZFIN http://zfin.org | biomedical, bibliographic, linkout, literature |
is used by: NIF Data Federation is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Gene Ontology Tools is related to: BAMS Connectivity is related to: Biological General Repository for Interaction Datasets (BioGRID) is related to: BioNumbers is related to: PubMed is related to: Brain Architecture Management System is related to: CellML Model Repository is related to: CHEBI is related to: Comparative Toxicogenomics Database (CTD) is related to: Coriell Cell Repositories is related to: Drug Related Gene Database is related to: DrugBank is related to: Gene Weaver is related to: Internet Brain Volume Database is related to: Cell Centered Database is related to: Brede Database is related to: ModelDB is related to: NeuronDB is related to: NeuroMorpho.Org is related to: Nuclear Receptor Signaling Atlas is related to: Cell Image Library (CIL) is related to: Animal Imaging Database is related to: Olfactory Receptor DataBase is related to: Glomerular Activity Response Archive is related to: CRCNS is related to: OMIM is related to: Rat Genome Database (RGD) is related to: Visiome Platform is related to: NIDA Data Share is related to: bioDBcore is related to: Addgene is related to: Antibody Registry is related to: Beta Cell Biology Consortium is related to: FlyBase is related to: SumsDB is related to: SciCrunch Registry is related to: Mouse Genome Informatics Transgenes is related to: NCBI Taxonomy is related to: OpenNeuro is related to: PeptideAtlas is related to: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat is related to: NIF Registry Automated Crawl Data is related to: AutDB is related to: Gene Expression Omnibus is related to: Gene Ontology is related to: Avian Brain Circuitry Database is related to: Zebrafish Information Network (ZFIN) is related to: GeneDB is related to: WormBase is related to: YPED has parent organization: Integrated |
PMID:20387131 PMID:18975149 |
Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License | nlx_149407 | http://neuinfo.org/nif/nifgwt.html?query=nlx_149407, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_149407-1 | SCR_008876 | Integrated Manually Extracted Annotation View, NIF Integrated LinkOut, NIF Integrated Manually Extracted Annotation, NIF LinkOut | 2026-09-19 12:57:19 | 0 | |||||
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Task Independent Fluctuations Discussion Resource Report Resource Website |
Task Independent Fluctuations Discussion (RRID:SCR_009515) | Task Independent Fluctuations Discussion | data or information resource, discussion, narrative resource, software resource | The methodology and applications of task independent fluctuation measures including: connectivity maps of fMRI resting state scans, research using EEG/MEG/PET etc, methods to remove non-neural fluctuations, and applications to clinical populations. | community, information resource, knowledge environment, model, magnetic resonance, other software resource, web environment, fmri, fmri resting state, eeg, meg, pet, non-neural fluctuation, clinical | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | nlx_155677 | SCR_009515 | 2026-09-19 12:57:20 | 0 | |||||||||
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Hippocampome.org Resource Report Resource Website 10+ mentions |
Hippocampome.org (RRID:SCR_009023) | Hippocampome | data or information resource, database | A curated knowledge base of the circuitry of the hippocampus of normal adult, or adolescent, rodents at the mesoscopic level of neuronal types. Knowledge concerning dentate gyrus, CA3, CA2, CA1, subiculum, and entorhinal cortex is distilled from published evidence and is continuously updated as new information becomes available. Each reported neuronal property is documented with a pointer to, and excerpt from, relevant published evidence, such as citation quotes or illustrations. Please note: This is an alpha-testing site. The content is still being vetted for accuracy and has not yet undergone peer-review. As such, it may contain inaccuracies and should not (yet) be trusted as a scholarly resource. The content does not yet appear uniformly across all combinations of browsers and screen resolutions. | interneuron, classification, neuroinformatics, network, hippocampus, neuron, property, morphology, molecular marker, electrophysiology, adult, adolescent, dentate gyrus, ca3, ca2, ca1, subiculum, entorhinal cortex, bio.tools |
is used by: BICCN is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is listed by: bio.tools has parent organization: George Mason University; Virginia; USA |
Normal | Air Force Office of Scientific Research ; Office of Naval Research MURI N00014-10-1-0198; NINDS R01NS39600; NINDS R21NS58816 |
Except otherwise noted, Creative Commons Attribution-ShareAlike License | nlx_152892, biotools:Hippocampome.org | http://www.nitrc.org/projects/hippocampome, https://bio.tools/Hippocampome.org | SCR_009023 | Hippocampome Portal | 2026-09-19 12:57:20 | 35 | ||||
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ShapeComplexAtlas Resource Report Resource Website |
ShapeComplexAtlas (RRID:SCR_002553) | ShapeComplexAtlas | software application, software resource | A Matlab demo for constructing a neuro-anatomical shape complex atlas from 3D MRI brain structures, based on the paper Ting Chen, Anand Rangarajan, Stephan J. Eisenschenk and Baba C. Vemuri, Construction of a Neuroanatomical Shape Complex Atlas from 3D MRI Brain Structures. In NeuroImage, Volume 60, Page 1778-1787, 2012 | atlas application, matlab, magnetic resonance, mri, shape complex atlas |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Florida; Florida; USA |
NSF RI-IIS 0954032; NSF IIS 1143963 |
PMID:22305953 PMID:20879384 |
Free, Available for download, Freely available | nlx_155960 | http://www.nitrc.org/projects/shapecomplex | SCR_002553 | 2026-09-19 12:57:45 | 0 | |||||
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SPHARM-PDM Toolbox Resource Report Resource Website |
SPHARM-PDM Toolbox (RRID:SCR_002546) | SPHARM-PDM Toolbox | software application, software resource | Software tool that computes point-based models using a parametric boundary description for the computing of Shape analysis. The point-based models computed with the SPHARM-PDM tool can be used in combination with the also UNC designed statistical tool shapeAnalysisMANCOVA to perform quantitative morphological assessment of structural changes at speci?c locations. Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. | analyze, c++, console (text based), macos, microsoft, magnetic resonance, nifti, nrrd, posix/unix-like, quantification, quantitative shape analysis, shape analysis, shape decomposition, spherical harmonics, surface analysis, win32 (ms windows), windows |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: INCF Software Center has parent organization: National Alliance for Medical Image Computing has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
PMID:24027625 | Free, Available for download, Freely available | nlx_155953 | http://www.nitrc.org/projects/spharm-pdm | SCR_002546 | UNC SPHARM-PDM, SPHARM-PDM UNC Toolbox | 2026-09-19 12:57:45 | 0 | |||||
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VMTK in 3D Slicer Resource Report Resource Website 1+ mentions |
VMTK in 3D Slicer (RRID:SCR_002579) | software resource, software toolkit | Provides series of modules which enable functions of Vascular Modeling Toolkit in 3D Slicer. Functionality includes vessel enhancement filtering, level set segmentation, centerline computation, network extraction and branch splitting.VMTK is available through the extension manager for 3D Slicer from version 4.6.2. Main difference to Slicer3 version is that now all VMTK modules come as one extension bundle. This should enhance the installation experience for users. | Vascular Modeling Toolkit, 3D Slicer, vessel enhancement filtering, level set segmentation, centerline computation, network extraction, branch splitting, |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: 3D Slicer is related to: Insight Segmentation and Registration Toolkit is related to: Vascular Modeling Toolkit |
Free | SCR_014179, nlx_155981 | https://github.com/haehn/VMTKSlicerExtension, http://www.nitrc.org/projects/slicervmtklvlst | http://www.vmtk.org/Main/VmtkIn3DSlicer | SCR_002579 | Slicer4:VMTK, Vascular Modeling Toolkit in 3D Slicer 4, VMTK Extension for 3D Slicer 4.2+, VMTK in 3D Slicer 4, Vascular Modeling Toolkit in 3D Slicer | 2026-09-19 12:57:45 | 1 | ||||||
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Working Memory Trainer Resource Report Resource Website |
Working Memory Trainer (RRID:SCR_002617) | WM Trainer | software application, software resource | A stand-alone axecutable under all main Windows OS for training the working memory. The WM Trainer looks and behaves a little bit like a video-game and has been specifically conceived for children attending the primary school. However, it can be used purposefully by people of any age, including adult and elderly. This application features highest graphic quality, a powerful adaptive engine for the difficulty level, a database of users and statistical tools to evaluate the progress. Currently English, French and Italian are supported, but any language can be easily supported. | clinical neuroinformatics, memory, french, italian | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free | nlx_156022 | SCR_002617 | 2026-09-19 12:57:46 | 0 | ||||||||
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scikit-learn Resource Report Resource Website 10000+ mentions |
scikit-learn (RRID:SCR_002577) | scikit-learn | software application, software resource | scikit-learn: machine learning in Python | algorithm, discriminant analysis, independent component analysis, linear, macos, microsoft, modeling, magnetic resonance, nonlinear, posix/unix-like, principal component analysis, python, regression, statistical operation, windows, data mining, data analysis, classification, clustering, dimensionality reduction, model selection, preprocessing, machine learning | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | PMID:24600388 | Free, Available for download, Freely available | nlx_155979 | http://www.nitrc.org/projects/scikit-learn | SCR_002577 | scikit-learn: machine learning in Python | 2026-09-19 12:57:45 | 14714 | |||||
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Network Based Statistic Toolbox Resource Report Resource Website 50+ mentions |
Network Based Statistic Toolbox (RRID:SCR_002454) | NBS | software resource, software toolkit | Matlab toolbox for testing hypotheses about the human connectome. NBS has been widely used to identify connections and networks comprising the connectome that are associated with an experimental effect or a between-group difference. User provides a series of connectivity matrices from different cohorts, or from the same subject during different experimental conditions. Connectivity matrices are inferred from neuroimaging data using other packages that, for example, count the number of tractography streamlines that interconnect each pair of regions (diffusion-MRI), or measure the extent of inter-regional correlation in BOLD response (fMRI). User specifies hypothesis to be tested at every connection with the general linear model. Features include: graphical user interface; NBSview, a basic network viewer modeled on SPMresults; exchange blocks for repeated measures; options to measure network size with intensity or extent; false discovery rate (FDR) option. Developed by Zalesky, Fornito, Cocchi and Bullmore. | connectivity analysis, domain independent, statistical operation, matlab |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Network-Based R-Statistics has parent organization: University of Melbourne; Victoria; Australia |
PMID:20600983 | Free, Available for download, Freely available | nlx_155826 | http://www.nitrc.org/projects/nbs | SCR_002454 | Network Based Statistic Toolbox, Network-Based Statistic (NBS) | 2026-09-19 12:57:45 | 68 | |||||
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Neuroimaging Informatics Technology Initiative Resource Report Resource Website 100+ mentions |
Neuroimaging Informatics Technology Initiative (RRID:SCR_003141) | NIfTI | knowledge environment, training resource | Coordinated and targeted service, training, and research to speed the development and enhance the utility of informatics tools related to neuroimaging. The initial focus will be on tools that are used in fMRI. If NIfTI proves useful in addressing informatics issues in the fMRI research community, it may be expanded to address similar issues in other areas of neuroimaging. Objectives of NIfTI * Enhancement of existing informatics tools used widely in neuroimaging research * Dissemination of neuroimaging informatics tools and information about them * Community-based approaches to solving common problems, such as lack of interoperability of tools and data * Unique training activities and research career development opportunities to those in the tool-user and tool-developer communities * Research and development of the next generation of neuroimaging informatics tools | neuroimaging, neuroinformatics, technology, service, training, research, mri, fmri, software, algorithm or reusable library, c, computed tomography, developers, information resource, java, matlab, magnetic resonance, nifti, other information resource, pet, spect, software |
is used by: Stark Cross-Sectional Aging is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: GIFTI has parent organization: National Institute of Mental Health is parent organization of: NIfTI Data Format Working Group |
NIH Blueprint for Neuroscience Research ; NIMH ; NINDS |
Free, Freely available | nif-0000-00561 | http://www.nitrc.org/projects/nifti | http://www.bic.mni.mcgill.ca/nifti/ | SCR_003141 | NIfTI: Neuroimaging Informatics Technology Initiative, Neuroimaging Informatics Technology Initiative (NIfTI) | 2026-09-19 12:57:46 | 349 | ||||
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VR Worlds 2 Resource Report Resource Website |
VR Worlds 2 (RRID:SCR_002608) | VR Worlds 2 | commercial organization, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. NOTE: VR Worlds 2 is no longer available as a standalone software. Software application designed for the creation and execution of neurobehavioral studies. The VR Worlds 2 platform allows accurate, real-time data collection of the navigation and interactions within a simulated environment. You are free to design and perform custom or predefined experiments tailored to your personal research or clinical needs. Create complex environments with meaningful content using VR Worlds 2?s user-friendly, drag-and-drop interface. Include triggers to launch simple or intricate events, such as a conversation between characters or a customizable rating scale. VR Worlds 2 provides several realistic simulations to immerse your subjects in context appropriate environments, including: * Residential/Urban Area * Hotel Lobby * Medical Office * Grocery Store * Neighborhood for drug and alcohol cue extinction treatment (featured on GMA, motion capture process) * Casino for gambling addiction research (featured on Canadian Discovery Channel) * Driving simulation for mild cognitive impairment research * Phobia scenarios * Spatial navigation mazes | eeg, meg, electrocorticography, experimental control, microsoft, magnetic resonance, win32 (ms windows), windows, windows vista, windows xp, neurobehavior, virtual environment | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156011 | http://www.nitrc.org/projects/vr2 | SCR_002608 | 2026-09-19 12:57:45 | 0 | |||||||
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LONI Provenance Editor Resource Report Resource Website |
LONI Provenance Editor (RRID:SCR_002483) | LONI Provenance Editor | software application, software resource | A self-contained, platform-independent application that automatically extracts the provenance information from an image header (such as a DICOM image) and generates a data provenance XML file with that information. | computed tomography, magnetic resonance, pet, spect, provenance, image header |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Laboratory of Neuro Imaging |
PMID:20927408 PMID:21791102 |
Free, Freely avaialble | nlx_155876 | http://www.nitrc.org/projects/provenance | SCR_002483 | 2026-09-19 12:57:45 | 0 | ||||||
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TARQUIN Resource Report Resource Website 50+ mentions |
TARQUIN (RRID:SCR_002598) | TARQUIN | software application, software resource | An analysis tool for automatically determining the quantities of molecules present in NMR spectroscopic data. The intended purpose of TARQUIN is to aid the characterisation of pathologies, in particular brain tumours, both non-invasively with in-vivo 1H MRS and ex-vivo with 1H HR-MAS. TARQUIN has the following features: * Free to use and modify under the GPL licence. * Based on a flexible time-domain fitting routine designed to give accurate rapid and automated quantitation for routine analysis. * Cross platform, works on Windows, Linux and OSX. * Comes packaged with a quantum mechanically based metabolite simulator to allow basis set construction optimised for the investigation of particular pathologies sequence parameters. * Includes both GUI and command line interface for one-off and batch analyses. | magnetic resonance, mrs, mas, molecule, nmr spectroscopy |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: SourceForge |
PMID:20878762 | Free, Available for download, Freely available | nlx_156002 | http://www.nitrc.org/projects/tarquin | SCR_002598 | TARQUIN MRS analysis package | 2026-09-19 12:57:45 | 64 |
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If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
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