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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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paint.net Resource Report Resource Website 10+ mentions |
paint.net (RRID:SCR_017641) | software resource, software application | Software tool as image and photo editor for PCs that run Windows. Features user interface with support for layers, unlimited undo, special effects, and variety of useful and powerful tools. | Image, photo, editor | PMID:18941840 | Free, Available for download, Freely available | SCR_017641 | paint.net 4.2.8, Paint.NET | 2026-08-12 10:51:48 | 15 | |||||||||
|
Gaussian Resource Report Resource Website 500+ mentions |
Gaussian (RRID:SCR_014897) | software resource, software application | Software program for electronic structure modeling that enables researchers to study and predict the properties of molecules and reactions under a wide range of conditions, especially those that are difficult or impossible to observe experimentally. | electronic structure modeling, simulation, visualization | Commercial | SCR_014897 | 2026-08-12 10:51:14 | 642 | |||||||||||
|
Jaguar Resource Report Resource Website 100+ mentions |
Jaguar (RRID:SCR_014895) | software resource, software application | Ab initio molecular modeling software program that computes an array of molecular properties such as multipole moments, polarizabilities, and electrostatic potential. It can also map reaction coordinates between reactants, products, and transition states. | ab initio, molecular modeling, chemical properties, array | DOI:10.1002/qua.24481 | Commercial | SCR_014895 | 2026-08-12 10:51:11 | 249 | ||||||||||
|
NetClamp Resource Report Resource Website 1+ mentions |
NetClamp (RRID:SCR_016275) | software resource, software application | Software for dynamic clamping. It uses National Instruments Boards. | neuroscience, clamp, patch, dynamic, board, | PMID:27385799 | Free, Available for download | http://www.gothamsci.com/NetClamp/, http://www.systemsneuroscience.website/NetClamp/ | SCR_016275 | 2026-08-12 10:51:23 | 2 | |||||||||
|
stroop-task Resource Report Resource Website 1+ mentions |
stroop-task (RRID:SCR_016033) | software resource, software application | Software that conducts the Stroop Color Task. Used in the ABCD Study. | stroop, task, color, vision, abcd, adolesence, study | NIDA U24 DA041123 | Free, Available for download | SCR_016033 | 2026-08-12 10:51:28 | 1 | ||||||||||
|
Freiburg Vision Test ('FrACT') Resource Report Resource Website 10+ mentions |
Freiburg Vision Test ('FrACT') (RRID:SCR_016439) | FrACT | standalone software, software resource, software application | Software tool for visual test battery in form of a free computer program.Can be run within your browser or download as a stand-alone program. Used by many vision labs, optometrists and ophthalmologists. | visual, test, battery, psychometric, method, automated, self paced, measurement, acuity, contrast, sensitivity, vernier | Free, Available for download, Freely available | SCR_016439 | Freiburg Acuity and Contrast Test | 2026-08-12 10:51:34 | 22 | |||||||||
|
MIES Resource Report Resource Website 10+ mentions |
MIES (RRID:SCR_016443) | software resource, software application | Software for Electrophysiology functions. It was developed by the Allen Institute. | eeg, neuroscience, neuroimaging, channel, neuroanatomy, electricity | Free, Available for download | SCR_016443 | Multichannel Igor Electrophysiology Suite, MIES - Multichannel Igor Electrophysiology Suite, MIES: Multichannel Igor Electrophysiology Suite, Multichannel Igor Electrophysiology Suite (MIES) | 2026-08-12 10:51:31 | 21 | ||||||||||
|
ReadCleaner4Scaffolding Resource Report Resource Website 1+ mentions |
ReadCleaner4Scaffolding (RRID:SCR_016166) | software resource, software application | This pipeline and the included scripts are used to filter useful reads for SSPACE. | SCR_016166 | 2026-08-12 10:51:30 | 1 | |||||||||||||
|
golang Resource Report Resource Website 10+ mentions |
golang (RRID:SCR_017096) | GO | programming language, software resource | Software tool as open source programming language to build simple, reliable, and efficient software. Developed by team at Google and many contributors from open source community. | programming, language |
is related to: SciPipe has parent organization: Google |
Free, Available for download, Freely available | SCR_017096 | The Go Programming Language, GO programming language | 2026-08-12 10:51:37 | 13 | ||||||||
|
MuseScore Resource Report Resource Website 10+ mentions |
MuseScore (RRID:SCR_016161) | software resource, software application | Music composition and manipulation software. | SCR_016161 | 2026-08-12 10:51:27 | 34 | |||||||||||||
|
Fastahack Resource Report Resource Website 1+ mentions |
Fastahack (RRID:SCR_016090) | software resource, software application | Software application for indexing and extracting sequences and subsequences from FASTA files. It will only generate indexes for FASTA files in which the sequences have self-consistent line lengths. | extract, quickly, subsequence, sequence, FASTA, files, generate, index |
is listed by: Debian is listed by: OMICtools |
Free, Available for download | OMICS_20516 | https://packages.debian.org/stretch/fastahack, https://sources.debian.org/src/fastahack/ | SCR_016090 | 2026-08-12 10:51:29 | 1 | ||||||||
|
SPARTAN Resource Report Resource Website 500+ mentions |
SPARTAN (RRID:SCR_014901) | software resource, software application | Software program for determining molecular structure and calculating chemical properties. It has a graphical interface and accurate computational models that are compatible with the iPad, iPhone and iPod Touch. When combined with the Spartan'16 Parallel Suite, this enables the first fully-functional open-ended molecular modeling environment on popular mobile technology. | molecular structure, chemical properties, modeling, mobile technology, integration | is listed by: SoftCite | Commercial | SCR_014901 | 2026-08-12 10:51:15 | 566 | ||||||||||
|
StarDrop Resource Report Resource Website 50+ mentions |
StarDrop (RRID:SCR_014902) | software resource, software application | Software toolkit for drug design and discovery, including plugins for in silico compound optimization, compound selection and integration into other databases. | drug discovery, in silico compound optimization, pharmacology, database, integration, FASEB list | Commercial | SCR_014902 | 2026-08-12 10:51:12 | 54 | |||||||||||
|
BrainBox Resource Report Resource Website 10+ mentions |
BrainBox (RRID:SCR_014750) | software resource, software application | Web application which allows users to visualise and collaboratively segment and annotate any brain MRI dataset available online via URL. A list of brains are available for use on the main site. Segmentations are automatically saved and can be downloaded as Nifti files or triangular meshes. Users can point BrainBox to their own Nifti data, or try data catalogues created by the community. | web application, data visualization software, mri, dataset, visualization, segment, nifti, collaboration |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) works with: MetaSearch is hosted by: Open Neuroimaging Laboratory is hosted by: GitHub |
Public | https://www.nitrc.org/projects/brainbox | SCR_014750 | 2026-08-12 10:50:59 | 11 | |||||||||
|
Autopatcher Resource Report Resource Website 1+ mentions |
Autopatcher (RRID:SCR_017464) | software resource, software application | Software tool for neuronal recording in intact brain. | Neuronal, recording, intact, brain, BRAIN Initiative | is recommended by: BRAIN Initiative | NIMH MH106027 | PMID:29297466 | Free, Available for download, Freely available | SCR_017464 | 2026-08-12 10:51:49 | 2 | ||||||||
|
Bootstrap CSS Resource Report Resource Website 10+ mentions |
Bootstrap CSS (RRID:SCR_016096) | programming language, software resource | Programming language framework for HTML, CSS, and JS. It is used for developing responsive, mobile projects on the web. | coding, framework, programming, development, mobile, project, web, application, html, css, js | Open source, Available for download | https://github.com/twbs/bootstrap | SCR_016096 | Bootstraps | 2026-08-12 10:51:26 | 11 | |||||||||
|
Alien-hunter Resource Report Resource Website 1+ mentions |
Alien-hunter (RRID:SCR_015967) | standalone software, software resource, software application | Software for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). The predictions (embl format) can be automatically loaded into Artemis genome viewer. | Horizontal Gene Transfer, Interpolated Variable Order Motifs, gene, transfer, interpolated, variable, motif, prediction, hgt, ivom |
is listed by: Debian is listed by: OMICtools works with: Artemis: Genome Browser and Annotation Tool |
Wellcome Trust | PMID:16837528 DOI:10.1093/bioinformatics/btl369 |
Free, Available for download | OMICS_08280 | https://sources.debian.org/src/alien-hunter/, https://sources.debian.org/src/alien-hunter/ | SCR_015967 | 2026-08-12 10:51:28 | 6 | ||||||
|
GenomeSpace Resource Report Resource Website 10+ mentions |
GenomeSpace (RRID:SCR_014967) | systems interoperability software, software application, software resource | Interoperability framework which supports integrative genomics analysis via access to various bioinformatics tools. Rather than performing analyses itself, GenomeSpace acts as a hub for data from supported bioinformatics tools and reformats data and results when necessary. | systems interoperability software, framework, interoperability, bioinformatics, genomics, integrative genomics, genome analysis, cloud |
has parent organization: Broad Institute has parent organization: Stanford University; Stanford; California has parent organization: University of California at San Diego; California; USA has parent organization: Pennsylvania State University has parent organization: University of California at Santa Cruz; California; USA |
Amazon Web Services ; NHGRI P01 HG005062; NHGRI HG007517 |
PMID:26780094 | Open source | SCR_014967 | 2026-08-12 10:51:16 | 11 | ||||||||
|
Stim2 Resource Report Resource Website 1+ mentions |
Stim2 (RRID:SCR_016751) | software resource, software application | Software environment for custom stimulus and task design as well as presentation. Compumedics Neuroscan’s design system which can be integrated in fMRI, MEG, and other functional neuro-imaging applications. Provides interface to design and present visual and auditory stimulation paradigms. | Compumedics Neuroscan, stimulus, task, design, presentation, fMRI, MEG, neuroimaging, visual, auditory | Commercially available | SCR_016751 | 2026-08-12 10:51:36 | 3 | |||||||||||
|
Lenntech activity coefficient calculator Resource Report Resource Website 1+ mentions |
Lenntech activity coefficient calculator (RRID:SCR_016475) | software resource, software application | Software tool to calculate the activity coefficient of an ion in solution by Lenntech B.V. Determines the ionic strength of solution by using the concentration of ions present in drinking water. | program, calculate, activity, coefficient, ion, solution, strength, concentration, drinking, water, Lenntech | Free, Public | SCR_016475 | 2026-08-12 10:51:31 | 2 |
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