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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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VEGA Resource Report Resource Website 500+ mentions |
VEGA (RRID:SCR_007907) | VEGA | service resource, data or information resource, production service resource, database, analysis service resource, data analysis service | Central repository for high quality frequently updated manual annotation of vertebrate finished genome sequence. Human, mouse and zebrafish are in the process of being completely annotated, whereas for other species the annotation is only of specific genomic regions of particular biological interest. The majority of the annotation is from the HAVANA group at the Welcome Trust Sanger Institute. Users can BLAST, search for specific text, export, and download data. Genomes and details of the projects for each species are available through the homepages for human mouse and zebrafish. The website is built upon code from the EnsEMBL (http://www.ensembl.org) project. Some Ensembl features are not available in Vega. From the users point of view perhaps the most significant of these is MartView. However due to their inclusion in Ensembl, Vega human and mouse data can be queried using Ensembl MartView. Vega contains annotation of the human MHC region in eight haplotypes, and the LRC region in three haplotypes. Vega also contains annotation on the Insulin Dependent Diabetes (IDD) regions on non-reference assemblies for mouse. | human, mouse, zebrafish, gorilla, wallaby, pig, dog, vertebrate, genome, orfs, FASEB list |
is listed by: Sequencing of Idd regions in the NOD mouse genome is related to: Consensus CDS has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:18003653 PMID:15975227 PMID:15608237 |
r3d100012575 | https://doi.org/10.17616/R3W77X | SCR_007907 | The Vertebrate Genome Annotation database (VEGA), Vertebrate Genome Annotation, Vertebrate Genome Annotation Database | 2026-08-12 10:49:38 | 765 | ||||||
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Retroviral Tagged Cancer Gene Database Resource Report Resource Website 10+ mentions |
Retroviral Tagged Cancer Gene Database (RRID:SCR_007908) | RTCGD | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Database of high throughput insertional mutagenesis screening projects of retroviral and transposon insertional mutagenesis in mouse tumors. Information in the RTCGD is obtained from sequence comparison by using public databases UCSC genome mm9 browser. Data based on previous genome assembly mm8 is also available at RTCGD mm8. MCGP has developed three web search tools including Easy Search to query proviral integration sites using mouse gene symbol of gene name; Model Search to obtain RIS information based on tumor models and/or tumor types; Interaction Search to find gene-to-gene interaction. It displays the list of genes which reside in the same tumor to your gene of interest. | insertional mutagenesis screening, retroviral and transposon insertional mutagenesis, mouse tumors, |
has parent organization: NCI-Frederick has parent organization: National Cancer Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03429, SCR_008568, nif-0000-31455 | http://rtcgd.ncifcrf.gov/ | SCR_007908 | RTCGD - Retroviral Tagged Cancer Gene Database | 2026-08-12 10:49:48 | 11 | ||||||
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R/TDTHAP Resource Report Resource Website 1+ mentions |
R/TDTHAP (RRID:SCR_007625) | software resource, software application | Software package for TDT with extended haplotypes in the R language. R is the public domain dialect of S. It should be possible to port this library to the commercial Splus product. The main problem would be translation of the help files. (entry from Genetic Analysis Software) | gene, genetic, genomic, r/splus | is listed by: Genetic Analysis Software | nlx_154676, nlx_154602, SCR_000851 | http://www-gene.cimr.cam.ac.uk/clayton/software/ | SCR_007625 | TDTHAP | 2026-08-12 10:49:44 | 1 | ||||||||
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University of California San Diego Department of Neurosciences Resource Report Resource Website |
University of California San Diego Department of Neurosciences (RRID:SCR_007983) | data or information resource, department portal, portal, organization portal | The Department of Neurosciences is composed of 33 ladder-rank faculty members, 23 research and project scientists, and 27 faculty who hold adjunct and joint appointments. Additionally, there are 61 individuals outside the university who participate in our clinical teaching programs. We are proud that Neurosciences at UCSD ranks first out of 90 competitors in overall NIH grant funding. The Department of Neurosciences also supports adult and pediatric residency training programs in neurology utilizing clinical facilities at the UCSD Medical Centers in Hillcrest and La Jolla, VA San Diego Medical Center, and Rady Children''s Hospital of San Diego. Areas of particular interest include the diagnosis, management, and research of neurodegenerative diseases (in particular Alzheimer''s disease and Parkinson''s disease), stroke, epilepsy, neuromuscular disorders, metabolic disorders, and neuro-developmental disorders, including autism. The Department maintains close ties with its neighboring institutions, including the Salk Institute, Scripps Research Institute, and Burnham Institute. The La Jolla Mesa has the greatest concentration of neuroscientists of any single area in the United States . | has parent organization: University of California at San Diego; California; USA | nif-0000-03878 | SCR_007983 | UCSD School of Medicine | 2026-08-12 10:49:48 | 0 | ||||||||||
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University of Pittsburgh Department of Neuroscience Resource Report Resource Website |
University of Pittsburgh Department of Neuroscience (RRID:SCR_007985) | data or information resource, department portal, portal, organization portal | The Department of Neuroscience in the School of Arts and Sciences at the University of Pittsburgh provides outstanding undergraduate and graduate education with innovative independent and collaborative research, a well-rounded curriculum, and a seminar series by the world''s most renowned leaders in the field of neuroscience. The Department has become successful and prominent based on the determination, energy, imagination, and skills of its faculty as investigators and as mentors, and on the support of the institution and the funding agencies. Consequently, morale is high and so is our optimism that we will continue to develop and maintain a world-class department. | NIH Office of the Director P40 OD010996 | nif-0000-04000 | SCR_007985 | U Pitt, UPitt Department of Neuroscience, UPitt Neuroscience | 2026-08-12 10:49:38 | 0 | ||||||||||
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GeneNetWorks Resource Report Resource Website 1+ mentions |
GeneNetWorks (RRID:SCR_008034) | data or information resource, database, data visualization software, data acquisition software, software application, data processing software, software resource, data analysis software | GeneNetWorks is designed for accumulation of experimental data, data navigation, data analysis, and analysis of dependencies in the field of gene expression regulation. It integrates the databases and programs for processing the data about structure and function of DNA, RNA, and proteins, together with the other information resources important for gene expression description. The unique property of above described system is that all the resources within the system GeneNetWorks are divided according to the natural hierarchy of molecular genetic systems and has the following levels: (1) DNA; (2) RNA; (3) proteins; and (4) gene networks. Each module contains: 1) experimental data represented as a database or some sample; 2) program for data analysis; 3) results of an automated data processing; 4) tools for the graphical representation of these data and the results of the data analyses. | experimental, expression, gene, gene regulation, genetic, analysis, data, dna, graphical, molecular, navigation, network, program, protein, rna, software, system | nif-0000-10232 | SCR_008034 | GNW | 2026-08-12 10:49:39 | 1 | ||||||||||
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University of Arkansas for Medical Sciences Department of Neurobiology and Developmental Sciences Resource Report Resource Website |
University of Arkansas for Medical Sciences Department of Neurobiology and Developmental Sciences (RRID:SCR_007981) | data or information resource, department portal, portal, organization portal | The Department of Neurobiology and Developmental Sciences is structured around three divisions originally intended as academic entities designed to facilitate and support the growth and development of faculty with common interests. Ideally, this will continue to foster the development of programmatic, interdisciplinary funding which would benefit both young and established faculty. The Divisions also provide leadership opportunities for Senior faculty, as they help the Chair with faculty development. In essence, the divisions are sites for mentoring of faculty who need training and skills in specific areas. Many faculty participate in multiple divisions, depending on their needs, interests, and expertise. The three divisions include the Division of Anatomical Education, the Division of Translational Neuroscience, and the Division of Cellular and Molecular Neuroscience. | nif-0000-03861 | SCR_007981 | UAMS | 2026-08-12 10:49:44 | 0 | |||||||||||
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Genomatix Software: Understanding Gene Regulation Resource Report Resource Website 500+ mentions |
Genomatix Software: Understanding Gene Regulation (RRID:SCR_008036) | portal, data or information resource, short course material, database, narrative resource, software application, training material, data processing software, topical portal, software resource, data analysis software | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 13,2026. Genomatix is a privately held company that offers software, databases, and services aimed at understanding gene regulation at the molecular level representing a central part of systems biology. Its multilayer integrative approach is a working implementation of systems biology principles. Genomatix combines sequence analysis, functional promoter analysis, proprietary genome annotation, promoter sequence databases, comparative genomics, scientific literature data mining, pathway databases, biological network databases, pathway analysis, network analysis, and expression profiling into working solutions and pipelines. It also enables better understanding of biological mechanisms under different conditions and stimuli in the biological context of your data. Some of Genomatix'' most valuable assets are the strong scientific background and the years of experience in research & discovery as well as in development & application of scientific software. Their firsthand knowledge of all the complexities involved in the in-silico analysis of biological data makes them a first-rate partner for all scientific projects involving the evaluation of gene regulatory mechanisms. The Genomatix team has more than a decade of scientific expertise in the successful application of computer aided analysis of gene regulatory networks, which is reflected by more than 150 peer reviewed scientific publications from Genomatix'' scientists More than 35,000 researchers in industry and academia around the world use this technology. The software available in Genomatix are: - GenomatixSuite: GenomatixSuite is our comprehensive software bundle including ElDorado, Gene2Promoter, GEMS Launcher, MatInspector and MatBase. GenomatixSuite PE also includes BiblioSphere Pathway Edition. Chromatin IP Software - RegionMiner: Fast, extensive analysis of genomic regions. - ChipInspector: Discover the real power of your microarray data. Genome Annotation Software - ElDorado: Extended Genome Annotation. - Gene2Promoter: Retrieve & analyze promoters - GPD: The Genomatix Promoter Database, which is now included with Gene2Promoter. Knowledge Mining Software - BiblioSpere : The next level of pathway/genomics analysis. - LitInspector: Literature and pathway analysis for free. Sequence Analysis Software - GEMS Launcher: Our integrated collection of sequence analysis tools. - MalInspector: Search transcription factor binding sites - MatBase: The transcription factor knowledge base. Other (no registration required) Software - DiAlign: Multiple alignment of DNA/protein sequence. - Genomatix tools: Various small tools for sequence statistics, extraction, formatting, etc. | effect, expression, functional, gene, genome, alignment, analysis, annotation, biological, cascade, cell, data, dna, in-silico analysis, mechanism, metabolic pathway, microarray, mining, molecular, network, pathway, promoter, protein, region, regulation, scientific, sequence, signaling, software, stimulus, systems biology, technology, text mining, transcription, FASEB list | has parent organization: Genomatix Solutions | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10236 | http://www.genomatix.de/products/index.html | SCR_008036 | Genomatix | 2026-08-12 10:49:45 | 887 | |||||||
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INFEVERS Resource Report Resource Website 10+ mentions |
INFEVERS (RRID:SCR_007738) | Infevers | service resource, data or information resource, data set, data repository, storage service resource | Registry for Familial Mediterranean Fever (FMF) and hereditary inflammatory disorders mutations. As of 2014, it includes twenty genes including: MEFV, MVK, TNFRSF1A, NLRP3, NOD2, PSTPIP1, LPIN2 and NLRP7, and contains over 1338 sequence variants. Confidential data, simple and complex alleles are accepted. For each gene, a menu offers: 1) a tabular list of the variants that can be sorted by several parameters; 2) a gene graph providing a schematic representation of the variants along the gene; 3) statistical analysis of the data according to the phenotype, alteration type, and location of the mutation in the gene; 4) the cDNA and gDNA sequences of each gene, showing the nucleotide changes along the sequence, with a color-based code highlighting the gene domains, the first ATG, and the termination codon; and 5) a download menu making all tables and figures available for the users, which, except for the gene graphs, are all automatically generated and updated upon submission of the variants. The entire database was curated to comply with the HUGO Gene Nomenclature Committee (HGNC) and HGVS nomenclature guidelines, and wherever necessary, an informative note was provided. | sequence variant, mutation, allele, genetics, dna, rna, protein, disease, heredity, inflammation, gene, function, phenotype, complex allele, simple allele, exon, intron, cdna sequence, genomic sequence, gdna, FASEB list |
is listed by: re3data.org is related to: Human Genome Variation Society is related to: HGNC |
Familial Mediterranean Fever, Auto-inflammatory Disorder, Hereditary Auto-inflammatory Disorder | European Union | PMID:18409191 PMID:15300846 PMID:12520003 |
Acknowledgement required, Free, Public | nif-0000-03022, r3d100010548 | http://fmf.igh.cnrs.fr/infevers, https://doi.org/10.17616/R3B61B | SCR_007738 | Internet Fevers | 2026-08-12 10:49:48 | 41 | |||
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University of Utah Salt Lake City Utah. Pharmacology & Toxicology Resource Report Resource Website 10+ mentions |
University of Utah Salt Lake City Utah. Pharmacology & Toxicology (RRID:SCR_007537) | data or information resource, department portal, portal, organization portal | The Department of Pharmacology and Toxicology at the University of Utah is located in Salt Lake City at the foot of the beautiful Wasatch Range of the Rocky Mountains. Our Department focuses on research, graduate and professional training, and service. The faculty of this department place a high priority on the teaching and research training of graduate students for the Ph.D. degree. Our program features close working relationships between individual students and their faculty mentor, rich and diverse research opportunities, and individualized programs of study based on the needs of the students. Doctoral graduates of our program gain employment in research and teaching positions at colleges and universities, engage in research and development in the biotechnology and pharmaceutical industries, and have additional opportunities in research institutes, government agencies, environmental protection organizations, and many other arenas. Our Summer Undergraduate Research Fellowship (SURF) Program provides enriching research experiences for undergraduate students anticipating research careers in the biological sciences. | nif-0000-02279 | SCR_007537 | Utah | 2026-08-12 10:49:38 | 17 | |||||||||||
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University of South Alabama Department of Pharmacology Resource Report Resource Website |
University of South Alabama Department of Pharmacology (RRID:SCR_007532) | data or information resource, department portal, portal, organization portal | The Department of Pharmacology is a program that combines an interdisciplinary core curriculum, advanced coursework and original research, and is designed to give students a broad interdisciplinary base and flexibility. Research training is offered in each of six formal advanced programs organized around traditional disciplines basic to medicine: Biochemistry and Molecular Biology, Cell Biology and Neuroscience, Microbiology and Immunology, Molecular and Cellular Pharmacology, or Physiology, and in the interdisciplinary Cancer Biology Program. There are also a number of research focus areas shared among the graduate faculty in the College of Medicine. | nif-0000-02252 | http://www.southalabama.edu/com/pharmacology/ | SCR_007532 | South Alabama | 2026-08-12 10:49:47 | 0 | ||||||||||
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ActiveDriver Resource Report Resource Website 10+ mentions |
ActiveDriver (RRID:SCR_008104) | ActiveDriver | sequence analysis software, software application, data processing software, software resource, data analysis software | A statistical method for interpreting variations in protein sequence (e.g. coding SNPs in the population, SNVs in cancer genomes) in the context of protein post-translational signaling modifications. | Protein sequence variation, variation interpretation, protein sequence, protein post-translational signaling modifications, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:ActiveDriver, OMICS_00140 | http://reimandlab.org/software/activedriver/, https://cran.r-project.org/web/packages/ActiveDriver/ActiveDriver.pdf, https://bio.tools/ActiveDriver | SCR_008104 | 2026-08-12 10:49:39 | 27 | |||||||
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University of South Alabama Department of Cell Biology and Neuroscience Resource Report Resource Website |
University of South Alabama Department of Cell Biology and Neuroscience (RRID:SCR_007531) | data or information resource, department portal, portal, organization portal | Offers graduate program and training. Areas include mechanisms of DNA repair, oligodendrocyte development and maturation, functional neuroanatomy, neurophysiology, cellular responses to oxidative stress, kinesin motor proteins and motility, regulation of nuclear transcription, and hormonal regulation of fertility. Program emphasizes understanding of biological principles at the cellular level and training in the anatomical disciplines to ensure success during career development. To achieve these objectives the department participates extensively in the Interdisciplinary Graduate Curriculum which teaches fundamental biological principles during the first year. After the first year, students select a mentor and begin to focus on a significant research topic. | nif-0000-02250 | http://southmed.usouthal.edu/com/scb/index2.html, http://www.usahealthsystem.com/cellbiology | SCR_007531 | 2026-08-12 10:49:37 | 0 | |||||||||||
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Rfam Resource Report Resource Website 1000+ mentions |
Rfam (RRID:SCR_007891) | Rfam, RFAM | service resource, production service resource, data or information resource, database, analysis service resource, data analysis service | The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: Non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion. Rfam is also available via FTP. You can find data in Rfam in various ways... * Analyze your RNA sequence for Rfam matches * View Rfam family annotation and alignments * View Rfam clan details * Query Rfam by keywords * Fetch families or sequences by NCBI taxonomy * Enter any type of accession or ID to jump to the page for a Rfam family, sequence or genome | family, genome, clan, structure, non-coding rna, FASEB list | has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | Howard Hughes Medical Institute ; University of Manchester; Manchester; United Kingdom ; Wellcome Trust WT077044/Z/05/Z |
PMID:21062808 | http://rfam.sanger.ac.uk/ | SCR_007891 | RFAM, Rfam database | 2026-08-12 10:49:48 | 4040 | ||||||
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University of Rochester Department of Neuroscience Resource Report Resource Website |
University of Rochester Department of Neuroscience (RRID:SCR_007530) | data or information resource, department portal, portal, organization portal | Department that includes over 60 faculty members in ten different departments from both the School of Medicine and Dentistry and The College of Arts and Sciences. Several graduate and undergraduate degree programs exist on campus that are designed to meet the diverse needs and interests of students engaged in the study of the nervous system. The tight physical proximity of the medical and main campuses generates a highly collaborative and interactive Neuroscience community, and provides students with broad and flexible opportunities in their training. | has parent organization: University of Rochester; New York; USA | nif-0000-02248 | http://www.bcs.rochester.edu/neuroscience/ | SCR_007530 | 2026-08-12 10:49:44 | 0 | ||||||||||
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University of Texas at San Antonio Laboratory of Professor Brenda Claiborne Resource Report Resource Website 1+ mentions |
University of Texas at San Antonio Laboratory of Professor Brenda Claiborne (RRID:SCR_008064) | UTSA Claiborne Lab | portal, data or information resource, data set, organization portal, laboratory portal | The long-term goals of my research are to understand the relationship between neuronal structure and function, and to elucidate the factors that affect neuronal morphology and function over the lifespan of the mammal. Currently we are examining 1) the effects of synaptic activity on neuronal development; 2) the effects of estrogen on neuronal morphology and on learning and memory; and, 3) the effects of aging on neuronal structure and function. We have focused our efforts on single neurons in the hippocampal formation, a region that is critical for certain forms of learning and memory in rodents and humans. From the portal, you may click on a cell in your region of interest to see the complete database of cells from that region. You may also explore the Neuron Database: * Comparative Electrotonic Analysis of Three Classes of Rat Hippocampal Neurons. (Raw data available) * Quantitative, three-dimensional analysis of granule cell dendrites in the rat dentate gyrus. * Dendritic Growth and Regression in Rat Dentate Granule Cells During Late Postnatal Development.(Raw data available) * A light and electron microscopic analysis of the mossy fibers of the rat dentate gyrus. | neuronal, structure, synaptic activity, rodent, human, neuron, neuronal morphology, synapse, neuronal development, learning, memory, estrogen, hippocampus, hippocampal formation, mammal, cell | has parent organization: University of Texas at San Antonio; Texas; USA | Aging | nif-0000-10481 | SCR_008064 | USTA Laboratory of Professor Brenda Claiborne | 2026-08-12 10:49:45 | 1 | |||||||
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University of Rhode Island College of Pharmacy Graduate Programs Resource Report Resource Website |
University of Rhode Island College of Pharmacy Graduate Programs (RRID:SCR_007529) | data or information resource, department portal, portal, organization portal | The University of Rhode Island College of Pharmacy is a professional school, but it is also an integral part of University of Rhode Island. The College of Pharmacy fosters a learning-centered, research-oriented educational environment that encourages individuals to make positive life-long contributions to global health. We prepare professional degree students to provide compassionate pharmacist-delivered patient care, and inspire our students through innovative problem-based learning, rich experiential curricula and inter-professional collaboration. We foster a community of scholars who will further the body of knowledge in pharmaceutical, biomedical, and clinical sciences. We strive to improve quality of life: locally, nationally and globally. | nif-0000-02244 | SCR_007529 | URI | 2026-08-12 10:49:47 | 0 | |||||||||||
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University of North Dakota Department of Pharmacology Physiology and Therapeutics Resource Report Resource Website |
University of North Dakota Department of Pharmacology Physiology and Therapeutics (RRID:SCR_007523) | portal, data or information resource, department portal, graduate program resource, organization portal | Department of Pharmacology, Physiology and Therapeutics at the University of North Dakota School of Medicine and Health Sciences is strongly committed to providing their students and the people of North Dakota excellent programs in education, research and service and they are dedicated to the development of leadership, innovation, and scholarly excellence. The translation of fundamental knowledge in the basic sciences to medically relevant problems is a major goal of the department and they are capable of providing the individualized attention and training necessary for the development of the medical scientist of the future. | nif-0000-02233 | http://www.med.und.nodak.edu/depts/pharm/ | SCR_007523 | UND | 2026-08-12 10:49:44 | 0 | ||||||||||
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ERIC Resource Report Resource Website 500+ mentions |
ERIC (RRID:SCR_007644) | ERIC | service resource, data or information resource, production service resource, database, analysis service resource, data analysis service | ERIC is a resource of annotated enterobacterial genomes. Information is available and accessed through a open web portal uniting biological data and analysis tools. ERIC contains information on Escherichia, Shigella, Salmonella, Yersinia, and other microorgansims. ERIC has recently been moved over to PATRIC: The PATRIC BRC is now responsible for all bacterial species in the NIAID Category A-C Priority Pathogen lists for biodefense research, and pathogens causing emerging/reemerging infectious diseases. For ERIC users, we understand that the resource was valuable to your work. As such, we will be doing our very best to create a useful PATRIC resource to continue supporting your work. We realize that the transition will cause disruptions. However, it is a priority for us to work with established BRC users and communities to identify and prioritize our transition efforts. We have concentrated on the transfer of genomic data for this initial release. We anticipate adding new data, tools, and website features over the next several months. We look forward to working with you during the next 5 years., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | enterobacteria, enterobacteria pathogen, biodefense, disease bioinformatics, human disease, pathogen, pathogenic bacteria, cronobacter, enterobacter, erwinia, klebsiella, pectobacterium, photorhabdus, proteus, serratia, escherichia, shigella, salmonella, yersinia, citrobacter, FASEB list | has parent organization: Virginia Polytechnic Institute and State University; Virginia; USA | NIAID | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02813 | http://www.ericbrc.org | SCR_007644 | Enteropathogen Resource Integration Center (ERIC), Enteropathogen Resource Integration Center | 2026-08-12 10:49:48 | 950 | |||||
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Salk Institute for Biological Studies: Jude Mitchells Neuron Exchange and Matlab Analysis Resource Report Resource Website |
Salk Institute for Biological Studies: Jude Mitchells Neuron Exchange and Matlab Analysis (RRID:SCR_008055) | data or information resource, data visualization software, database, rendering software, software application, data processing software, software resource | This resource contains to MATLAB code to make and show videos that can be acquired for free. Data for the movies came from a Macaque attention task. Data on this page came from the multiple-object tracking attention task in a Macaque: The monkeys fixated the white dot at the center of the computer monitor, and four striped stimuli appeared. Their eye position was monitored using an IR camera. The red cross shows where the eyes were pointing throughout each trial. The circle shows the location of the receptive field of the neuron under study during the recording. At the beginning of each trial, either one or two of the stimuli were highlighted, indicating to the monkey that they were the targets of attention. The stimuli then moved to new locations and paused, with one stimulus in the receptive field. After a brief pause, they moved to new locations and the fixation point disappeared. The monkey was rewarded with juice if it then looked at the cued targets. Attention Dask Demo (Avi File) contains Matlab code to make and show movies. Publication from this Dataset: * Differential attention-dependent response modulation across cell classes in macaque visual area V4. JF Mitchell, KA Sundberg, JH Reynolds. Neuron, 2007, 55. 131-141. * Supplemental Material, Neuron, 2007, 55. 131-141. :A Subset of data can be downloaded with analysis routines (easiest to download whole set with full subdirectory structure). Additionally, neuron data files can also be downloaded. :* Routines for Fano Factor, Autocorrelation, and Power Spectra (poster above): :o Plots Spike Waveform and Tests if Significant Visual Response: basic_info.m :o Firing Rate and Fano Factor Analysis (Mitchell et. al, 2007): rate_fano_psth.m :* Routines for Spike-LFP Coherence: :o Spike-LFP Coherence with Rate Normalization (attempting Womelsdorf & Fries, Cosyne, 2008): rate_normalized_coherence.m Sponsors: This work was supported by a grant from the National Eye Institute (EY016161, J.F.M. and J.H.R.), a National Institutes of Health Training Fellowship (J.F.M.), and a National Science Foundation Graduate Research Fellowship (K.A.S.). | code, matlab, movies, video, eye tracking device | nif-0000-10412 | SCR_008055 | Salk Insitute (J. Mitchel) | 2026-08-12 10:49:48 | 0 |
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