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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Center for the Neural Basis of Cognition Resource Report Resource Website 10+ mentions |
Center for the Neural Basis of Cognition (RRID:SCR_002301) | data or information resource, organization portal, portal | CNBC is joint venture of University of Pittsburgh and Carnegie Mellon University. Our center leverages the strengths of the University of Pittsburgh in basic and clinical neuroscience and those of Carnegie Mellon in cognitive and computational neuroscience to support a coordinated cross-university research and educational program of international stature. In addition to our Ph.D. program in Neural Computation, we sponsor a graduate certificate program in cooperation with a wide variety of affiliated Ph.D. programs. | brain, cognition, cognitive abilities, development, disorders, human, human thought, learning, mind, multidisciplinary, neural activity, neural mechanisms, neurobasis, normal, training | has parent organization: Carnegie Mellon University; Pennsylvania; USA | nif-0000-00370 | SCR_002301 | CNBC | 2026-08-13 09:26:34 | 16 | |||||||||
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DPARSF Resource Report Resource Website 500+ mentions |
DPARSF (RRID:SCR_002372) | DPARSF | software toolkit, data processing software, software resource, software application | A MATLAB toolbox forpipeline data analysis of resting-state fMRI that is based on Statistical Parametric Mapping (SPM) and a plug-in software within DPABI. After the user arranges the Digital Imaging and Communications in Medicine (DICOM) files and click a few buttons to set parameters, DPARSF will then give all the preprocessed (slice timing, realign, normalize, smooth) data and results for functional connectivity, regional homogeneity, amplitude of low-frequency fluctuation (ALFF), fractional ALFF, degree centrality, voxel-mirrored homotopic connectivity (VMHC) results. DPARSF can also create a report for excluding subjects with excessive head motion and generate a set of pictures for easily checking the effect of normalization. In addition, users can also use DPARSF to extract time courses from regions of interest. DPARSF basic edition is very easy to use while DPARSF advanced edition (alias: DPARSFA) is much more flexible and powerful. DPARSFA can parallel the computation for each subject, and can be used to reorient images interactively or define regions of interest interactively. Users can skip or combine the processing steps in DPARSF advanced edition freely. | magnetic resonance, fmri, resting-state fmri, matlab, analysis, brain |
is used by: DPABI is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Beijing Normal University; Beijing; China has parent organization: RFMRI.ORG |
PMID:20577591 | GNU General Public License | nlx_155735 | http://www.nitrc.org/projects/dparsf | SCR_002372 | Data Processing Assistant for Resting-State fMRI | 2026-08-13 09:26:35 | 696 | |||||
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NiftyRec Resource Report Resource Website 1+ mentions |
NiftyRec (RRID:SCR_002499) | NiftyRec | software toolkit, data processing software, software resource, software application | Software toolbox that includes reconstruction tools for emission and transmission imaging modalities, including Single Photon Emission Computed Tomography (SPECT), Positron Emission Tomography (PET), cone-beam X-Ray CT and parallel-beam X-Ray CT. At the core of NiftyRec are efficient, GPU accelerated, projection, back-projection and iterative reconstruction algorithms. The easy to use Matlab and Python interfaces of NiftyRec enable fast prototyping and development of reconstruction algorithms. NiftyRec includes standard iterative reconstruction algorithms such as Maximum Likelihood Expectation Maximisation (MLEM), Ordered Subsets Expectation Maximisation (OSEM) and One Step Late Maximum A Posteriori Expectation Maximisation (OSL-MAPEM), for multiple imaging modalities. | computed tomography, pet, spect |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University College London; London; United Kingdom |
BSD License | nlx_155898 | http://www.nitrc.org/projects/niftyrec | SCR_002499 | NiftyRec Tomography Toolbox, NiftyRec Open Source Tomography Toolbox | 2026-08-13 09:26:34 | 2 | ||||||
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MutPred Splice Resource Report Resource Website 1+ mentions |
MutPred Splice (RRID:SCR_000594) | MutPred Splice | production service resource, service resource, analysis service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 6,2023. Tool for identifying coding region variants which disrupt pre-mRNA splicing and the underlying mechanism. | exonic variant, splicing, mrna, next generation sequencing, coding region substitution |
is listed by: OMICtools has parent organization: Cardiff University; Wales; United Kingdom has parent organization: Buck Institute; California; USA |
PMID:24451234 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02257 | SCR_000594 | 2026-08-13 09:26:13 | 1 | |||||||
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Statistical non-Parametric Mapping Resource Report Resource Website 50+ mentions |
Statistical non-Parametric Mapping (RRID:SCR_002092) | SnPM | software toolkit, data processing software, software resource, software application | A toolbox for Statistical Parametric Mapping (SPM) that provides an extensible framework for voxel level non-parametric permutation/randomization tests of functional Neuroimaging experiments with independent observations. SnPM uses the General Linear Model to construct pseudo t-statistic images, which are then assessed for significance using a standard non-parametric multiple comparisons procedure based on randomization/permutation testing. It is most suitable for single subject PET/SPECT analyses, or designs with low degrees of freedom available for variance estimation. In these situations the freedom to use weighted locally pooled variance estimates, or variance smoothing, makes the non-parametric approach considerably more powerful than conventional parametric approaches, as are implemented in SPM. Further, the non-parametric approach is always valid, given only minimal assumptions. The SnPM toolbox provides an alternative to the Statistics section of SPM. | analyze, linear, linux, macos, matlab, microsoft, magnetic resonance, nifti, posix/unix-like, regression, statistical operation, sunos/solaris, windows, statistical parametric mapping, pet, spect |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is affiliated with: SPM has parent organization: University of Michigan; Ann Arbor; USA has parent organization: University of Warwick; Coventry; United Kingdom |
Human Brain Project | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00342 | http://www.nitrc.org/projects/snpm | SCR_002092 | SnPM: Statistical nonParametric Mapping, SnPM - Statistical NonParametric Mapping - A toolbox for SPM, Statistical nonParametric Mapping | 2026-08-13 09:26:32 | 95 | |||||
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Tissue Engineering Resource Center Resource Report Resource Website 1+ mentions |
Tissue Engineering Resource Center (RRID:SCR_000103) | TERC | data or information resource, organization portal, portal | Biomedical technology research center designed to advance basis and clinical aspects of tissue engineering, to provide training for investigators and dissemination of scientific findings and new techniques. Expertise and facilities are focused on research, problem solving and training for biomedical community through integrated systems approach to challenges in tissue engineering. Mission for TERC is to engineer human tissues for medical impact. Includes Functional human tissue grafts: human tissues for application in regenerative medicine;Human disease models in vitro: in vitro models of human disease to provide new experimental tools to understand progression of disease, effects and mechanisms of drug action; Biological materials research: bioengineering tools for cell biology studies in context of tissue development, regeneration and disease. | tissue engineering, stem cell, tissue graft, tissue development, regeneration, human disease, regenerative medicine, in vitro, disease model, bioengineering |
is listed by: National Institute of Biomedical Imaging and Bioengineering has parent organization: Tufts University; Massachusetts; USA has parent organization: Columbia University; New York; USA |
nlx_152637 | SCR_000103 | TERC: Tissue Engineering Resource Center | 2026-08-13 09:26:07 | 8 | ||||||||
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Wavelet-based Image Fusion Resource Report Resource Website 1+ mentions |
Wavelet-based Image Fusion (RRID:SCR_002007) | Wavelet-based Image Fusion | software toolkit, data processing software, software resource, software application | Matlab toolbox that implements the wavelet-based image fusion technique for orthogonal images, introduced in (Aganj et al, MRM 2012). | magnetic resonance | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | PMID:21761448 | Free, Available for download, Freely available | nlx_156018 | SCR_002007 | 2026-08-13 09:26:31 | 2 | |||||||
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Netherlands Organization for Scientific Research Resource Report Resource Website 100+ mentions |
Netherlands Organization for Scientific Research (RRID:SCR_000988) | NWO | data or information resource, funding resource, portal, regional funding resource | Netherlands Organization for Scientific Research (NWO) is a research institute and regional funding source in the Netherlands. | nwo, the netherlands, neternlands research institute, netherlands organization, netherlands government, netherlands granting agency | nlx_151487 | SCR_000988 | Netherlands Organization for Scientific Research | 2026-08-13 09:26:16 | 221 | |||||||||
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Project Halo Resource Report Resource Website 1+ mentions |
Project Halo (RRID:SCR_000136) | Project Halo | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Project Halo is a staged, long-range research effort by Vulcan Inc. towards the development of a Digital Aristotlea reasoning system capable of answering novel questions and solving advanced problems in a broad range of scientific disciplines and related human affairs. The project focuses on creating two primary functions: a tutor capable of instructing and assessing students in those subjects, and a research assistant with broad, interdisciplinary skills to help scientists and others in their work. Vulcan began work towards this ambitious vision in 2003 with the Halo Pilot a six-month effort to investigate the feasibility of creating a scientific knowledge base capable of answering novel questions from the AP (1st year college level) chemistry test. Three teams SRI International, Cycorp, and Ontoprise developed knowledge bases, for a limited section of an AP-chemistry syllabus, that were able to correctly answer 40 to 50 percent of the associated questions from the AP test. Since 2004, Project Halo has worked to improve these systems, with an emphasis on enabling knowledge entry by domain experts, instead of specialists in artificial intelligence software. In 2004, Vulcan began the development of Automated User-Centered Reasoning and Acquisition System (AURA), by SRI, that enables domain experts (graduate students in Biology, Chemistry, and Physics) to enter knowledge from introductory science textbooks. In 2006, an evaluation of AURA showed that students could create AURA knowledge bases that correctly answered 40 percent of the questions on a limited AP exam. In 2008, the next evaluation demonstrated an improvement of that score to 70 percent correct. In parallel, Project Halo has sponsored Ontoprise to develop semantic extensions to MediaWiki, the software that Wikipedia runs on. Ontoprise has developed a set of Semantic MediaWiki (SMW)+ extensions to MediaWiki that provide a community-based environment for authoring ontologies and creating semantically enhanced wikis. SMW+ has been widely used and is being applied in project management, enterprise collaboration and knowledge management, business intelligence, and the management of large terminology sets. In 2007, Vulcan began a new effort, Halo Advanced Research (HalAR), to address the difficult knowledge representation and reasoning (KR) challenges that prevent the realization of Digital Aristotle. This effort has produced a new semantic rule language and reasoning system, Semantic Inferencing on Large Knowledge (SILK), which includes major advances, including for default and higher-order reasoning over the web. | project, tutor, research assistant, science, knowledge-base, semantic mediawiki, ontology, textbook, book, training material, digital book, data mining, biology | has parent organization: Stanford Research Institute International | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144483 | SCR_000136 | 2026-08-13 09:26:07 | 1 | ||||||||
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EuMMCR Resource Report Resource Website 10+ mentions |
EuMMCR (RRID:SCR_001506) | EuMMCR | material resource, cell repository, biomaterial supply resource | Embryonic stem cell distribution unit that distributes material arising within European Conditional Mouse Mutagenesis Program consortium, currently targeting vectors and ES cells. Upon user request EUCOMM grow targeting vectors from glycerol stocks and prepare vector DNA. Identity of vector is verified by restriction mapping. Upon user request EUCOMM thaw, expand and re-freeze several aliquots of desired ES cell clone. Standard controls include PCR based assay. Upon additional request EuMMCR unit develops genotyping PCR, which can be used to genotype chimeric mice that may be generated using those ES cell clones. | embryonic stem cell, vector, experimental protocol, male, dna, genotype |
is used by: EUCOMMTOOLS is listed by: One Mind Biospecimen Bank Listing is related to: European Conditional Mouse Mutagenesis Program has parent organization: Helmholtz Center Munich |
Free, Freely available | nlx_152805 | http://www.eummcr.org/ | SCR_001506 | EuMMCR - European Mouse Mutant Cell Repository, European Mouse Mutant Cell Repository | 2026-08-13 09:26:25 | 24 | ||||||
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NBDC - National Bioscience Database Center Resource Report Resource Website 1+ mentions |
NBDC - National Bioscience Database Center (RRID:SCR_000814) | NBDC | data or information resource, organization portal, database, portal | The National Bioscience Database Center (NBDC) intends to integrate all databases for life sciences in Japan, by linking each database with expediency to maximize convenience and make the entire system more user-friendly. We aim to focus our attention on the needs of the users of these databases who have all too often been neglected in the past, rather than the needs of the people tasked with the creation of databases. It is important to note that we will continue to honor the independent integrity of each database that will contribute to our endeavor, as we are fully aware that each database was originally crafted for specific purposes and divergent goals. Services: * Database Catalog - A catalog of life science related databases constructed in Japan that are also available in English. Information such as URL, status of the database site (active vs. inactive), database provider, type of data and subjects of the study are contained for each database record. * Life Science Database Cross Search - A service for simultaneous searching across scattered life-science databases, ranging from molecular data to patents and literature. * Life Science Database Archive - maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata in a unified format, and to access and download the datasets with clear terms of use. * Taxonomy Icon - A collection of icons (illustrations) of biological species that is free to use and distribute. There are more than 200 icons of various species including Bacteria, Fungi, Protista, Plantae and Animalia. * GenLibi (Gene Linker to bibliography) - an integrated database of human, mouse and rat genes that includes automatically integrated gene, protein, polymorphism, pathway, phenotype, ortholog/protein sequence information, and manually curated gene function and gene-related or co-occurred Disease/Phenotype and bibliography information. * Allie - A search service for abbreviations and long forms utilized in life sciences. It provides a solution to the issue that many abbreviations are used in the literature, and polysemous or synonymous abbreviations appear frequently, making it difficult to read and understand scientific papers that are not relevant to the reader's expertise. * inMeXes - A search service for English expressions (multiple words) that appear no less than 10 times in PubMed/MEDLINE titles or abstracts. In addition, you can easily access the sentences where the expression was used or other related information by clicking one of the search results. * HOWDY - (Human Organized Whole genome Database) is a database system for retrieving human genome information from 14 public databases by using official symbols and aliases. The information is daily updated by extracting data automatically from the genetic databases and shown with all data having the identifiers in common and linking to one another. * MDeR (the MetaData Element Repository in life sciences) - a web-based tool designed to let you search, compare and view Data Elements. MDeR is based on the ISO/IEC 11179 Part3 (Registry metamodel and basic attributes). * Human Genome Variation Database - A database for accumulating all kinds of human genome variations detected by various experimental techniques. * MEDALS - A portal site that provides information about databases, analysis tools, and the relevant projects, that were conducted with the financial support from the Ministry of Economy, Trade and Industry of Japan. | life science, research, database, catalog, tool, gene, service, molecule, patent, literature, taxonomy, image, bacteria, fungus, protist, plant, animal, human, mouse, rat, gene, protein, polymorphism, pathway, phenotype, ortholog, protein sequence, gene function, disease, phenotype, bibliography, english expression, human genome, genome, human genome variation, variation, analysis tool |
has parent organization: Japan Science and Technology Agency is parent organization of: Human Variation DB is parent organization of: Japanese Genotype-phenotype Archive (JGA) is parent organization of: ChIP-Atlas |
Japan Science and Technology Agency | nlx_151485 | SCR_000814 | National Bioscience Database Center, National Bioscience Database Center (NBDC) | 2026-08-13 09:26:16 | 3 | |||||||
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NIDDK Inflammatory Bowel Disease Genetics Consortium Resource Report Resource Website 1+ mentions |
NIDDK Inflammatory Bowel Disease Genetics Consortium (RRID:SCR_001461) | IBDGC, NIDDKIBDGC | material resource, cell repository, biomaterial supply resource | Repository of biospecimen and phenotype data collected from Crohn's disease and ulcerative colitis cases and controls recruited at six sites throughout North America that are available to the scientific community. Phenotyping is performed using a standardized protocol, and lymphoblastoid cell lines are established for each subject. Phenotype data for each subject are collected by the Consortium's Data Coordinating Center (DCC), and phenotype data for all subjects with DNA samples are available. The resulting DNA samples have already been utilized by the Consortium to complete various association studies, including genome-wide association studies using dense genotyping arrays. Researchers can obtain DNA samples and phenotype, genotype, and pedigree data through the Data Repository. GWAS data must be requested through dbGAP. The IBDGC is involved with independent genetic research studies and actively works with members of the IBD and genetic communities on collaborative projects. They are also members of the International IBD Genetics Consortium. Phenotype Tools: The Consortium Phenotype Committee, led by Dr. Hillary Steinhart designed and validated paper forms to collect extensive phenotype data on Crohn's Disease and ulcerative colitis. Consortium phenotype tools are available for use by non-Consortium members. | dna, cell line, serum, lymphocyte, lymphoblastoid cell line, gene, loci, genetic analysis, blood, phenotype, genome-wide association study, genotype, pedigree, metadata standard, genotyping array |
uses: NCBI database of Genotypes and Phenotypes (dbGap) is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) has parent organization: Yale School of Medicine; Connecticut; USA |
Inflammatory Bowel Disease, Crohn's disease, Ulcerative colitis, Control, Family member | NIDDK U01 DK062429 | Free, Freely Available | nlx_152706 | http://medicine.yale.edu/intmed/ibdgc/ | SCR_001461 | IBD Genetics Consortium, NIDDKIBD Genetics Consortium, Inflammatory Bowel Disease Genetic Consortium | 2026-08-13 09:26:21 | 3 | ||||
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Bern-Barcelona EEG database Resource Report Resource Website 1+ mentions |
Bern-Barcelona EEG database (RRID:SCR_001582) | Bern-Barcelona EEG database | data or information resource, software resource, source code, data set | THIS RESOURCE IS NO LONGER IN SERVICE, documented November 23, 2020; EEG data set, source code, and results from 7500 signal pairs from 5 epilepsy patients analyzed in the manuscript, Andrzejak RG, Schindler K, Rummel C. Nonrandomness, nonlinear dependence, and nonstationarity of electroencephalographic recordings from epilepsy patients. Phys. Rev. E, 86, 046206, 2012. All Matlab source codes are included in the file ASR_Sources_2012_10_16.zip. The clinical purpose of these recordings was to delineate the brain areas to be surgically removed in each individual patient in order to achieve seizure control. | eeg, electroencephalogram, epilepsy, intracranial, eeg recording, signal, analysis, time series, nonlinear, surrogate signal, surrogate, matlab, focal, non-focal, signal | has parent organization: Pompeu Fabra University; Barcelona; Spain | Epilepsy, Pharmacoresistant focal-onset epilepsy, Seizure | Spanish Ministry of Education and Science grant FIS-2010-18204; Swiss National Science Foundation SNF 320030-122010; Swiss National Science Foundation SNF 33CM30-124089 |
PMID:23214662 | Free, Available for download, Freely available | nlx_153819 | http://ntsa.upf.edu/downloads/andrzejak-rg-schindler-k-rummel-c-2012-nonrandomness-nonlinear-dependence-and, http://www.dtic.upf.edu/~ralph/sc/ | SCR_001582 | 2026-08-13 09:26:23 | 3 | ||||
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Rosalind Resource Report Resource Website 10+ mentions |
Rosalind (RRID:SCR_006233) | Rosalind | open course, training resource, online course | A software infrastructure, course and tool set for teaching bioinformatics, and biology through the use of models. This platform for learning bioinformatics through problem solving aims to make learning bioinformatics fun and easy. Learning bioinformatics usually requires solving computational problems of varying difficulty that are extracted from real challenges of molecular biology. Rosalind offers an array of intellectually stimulating problems that grow in biological and computational complexity; each problem is checked automatically, so that the only resource required to learn bioinformatics is an internet connection. Rosalind also promises to facilitate improvements in standard bioinformatics education by providing a vital teaching aid and a central homework resource. Rosalind is inspired by Project Euler, Google Code Jam, and the ever growing movement of free online courses. The project''s name commemorates Rosalind Franklin, whose X-ray crystallography with Raymond Gosling facilitated the discovery of the DNA double helix by Watson and Crick. We hope that Rosalind will inspire a new generation of bioinformatics students by attracting biologists who want to develop vital programming skills at their own pace in a unique environment as well as programmers who have never been exposed to some of the stimulating computational problems generated by molecular biology. | bioinformatics, biology, model, programming, teaching, course, problem solving, python, algorithm, molecular biology |
is listed by: OMICtools has parent organization: University of California at San Diego; California; USA has parent organization: Saint Petersburg Academic University; Saint Petersburg; Russia |
Howard Hughes Medical Institute ; Ministry of Education and Science of the Russian Federation ; Megagrant |
nlx_151793, OMICS_01709 | SCR_006233 | 2026-08-13 09:27:36 | 39 | ||||||||
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OppNet - Basic Behavioral and Social Science Opportunity Network Resource Report Resource Website 1+ mentions |
OppNet - Basic Behavioral and Social Science Opportunity Network (RRID:SCR_003522) | OppNet | data or information resource, organization portal, funding resource, portal | OppNet is a trans-NIH initiative to expand the agency's funding of basic behavioral and social sciences research (b-BSSR). Basic-BSSR studies mechanisms and processes that influence behavior at the individual, group, community and population level. Research results lead to new approaches for reducing risky behaviors and improving the adoption of healthy practices. The mission of OppNet is to pursue opportunities for strengthening basic behavioral and social science research (b-BSSR) at the NIH while innovating beyond existing investments. * OppNet advances basic behavioral and social science research through activities and initiatives that build a body of knowledge about the nature of behavior and social systems. * OppNet prioritizes activities and initiatives that focus on basic mechanisms of behavior and social processes; that are relevant to the missions and public health challenges of multiple NIH Institutes, Centers and Offices (ICOs); and that build upon existing NIH investments without replicating them. All NIH Institutes and Centers (ICs) share the mission of supporting b-BSSR. OppNet will also develop a plan for focused multi-year programs across ICs to advance priority topics within b-BSSR. | has parent organization: National Institutes of Health | nif-0000-38232 | SCR_003522 | OppNet: Basic Behavioral and Social Science Opportunity Network | 2026-08-13 09:26:51 | 1 | |||||||||
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Donate Life America Resource Report Resource Website 1+ mentions |
Donate Life America (RRID:SCR_000531) | data or information resource, group, portal | Nonprofit alliance of national organizations and state teams dedicated to increasing organ, eye and tissue donation. Donate Life America manages and promotes the national brand for donation, Donate Life, and assists Donate Life State Teams and national partners in facilitating high-performing donor registries; developing and executing effective multi-media donor education programs; and motivating the American public to registeras organ, eye and tissue donors. | tissue, organ, eye, donor, education, promotion, nonprofit |
is parent organization of: OneLegacy is parent organization of: American Donor Services is parent organization of: LifeShare Transplant is parent organization of: Center for Organ Recovery and Education - CORE is parent organization of: Mid-America Transplant Services is parent organization of: LifeGift Organ Donation Center is parent organization of: Gift of Life Donor Program is parent organization of: New York Organ Donor Network - NYODN is parent organization of: Living Legacy Foundation of Maryland is parent organization of: LifeCenter Organ Donor Network is parent organization of: Upstate New York Transplant Services is parent organization of: LifeBanc is parent organization of: LifeLink Foundation is parent organization of: UNOS - United Network for Organ Sharing is parent organization of: Lifeline of Ohio is parent organization of: NMDS - New Mexico Donor Services is parent organization of: Donate Life Louisiana is parent organization of: Central New York Eye and Tissue Bank |
Public | nlx_63855 | SCR_000531 | Donate Life Network, Donate Life Organization, Donate Life | 2026-08-13 09:26:11 | 2 | ||||||||
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International Gene Trap Consortium Resource Report Resource Website 10+ mentions |
International Gene Trap Consortium (RRID:SCR_002305) | IGTC | material resource, cell repository, biomaterial supply resource | Consortium represents all publicly available gene trap cell lines, which are available on non-collaborative basis for nominal handling fees. Researchers can search and browse IGTC database for cell lines of interest using accession numbers or IDs, keywords, sequence data, tissue expression profiles and biological pathways, can find trapped genes of interest on IGTC website, and order cell lines for generation of mutant mice through blastocyst injection. Consortium members include: BayGenomics (USA), Centre for Modelling Human Disease (Toronto, Canada), Embryonic Stem Cell Database (University of Manitoba, Canada), Exchangeable Gene Trap Clones (Kumamoto University, Japan), German Gene Trap Consortium provider (Germany), Sanger Institute Gene Trap Resource (Cambridge, UK), Soriano Lab Gene Trap Resource (Mount Sinai School of Medicine, New York, USA), Texas Institute for Genomic Medicine - TIGM (USA), TIGEM-IRBM Gene Trap (Naples, Italy). | embryo, embryonic, gene, genome, allele, analysis, assay, bioinformatics, blastocyst, cell, colony, consortium, genotyping, hybridization, in situ, international, knockout, murine, mutant, mutation, probe, qpcr, researcher, scientist, sequence, stem cell, tagging, trap, vector, cell line, embryonic stem cell line, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is related to: Centre for Modeling Human Disease Gene Trap Resource has parent organization: University of California at San Francisco; California; USA is parent organization of: International Gene Trap Consortium Pathways |
NCRR P41 RR01081 | PMID:16381950 | Restricted | nif-0000-00036 | https://igtc.org/ | SCR_002305 | International Gene Trap Consortium | 2026-08-13 09:26:34 | 43 | ||||
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Koadarray Resource Report Resource Website 1+ mentions |
Koadarray (RRID:SCR_000321) | image analysis software, data processing software, software resource, software application | A fully automatic array image analysis software which can process single or multiple array images. Koadarray automatically finds the spot locations within each image and quantifies the spot intensity data. It can be used in conjunction with radioactive applications, macroarray applications, fluorescent microarray image analysis and fluorescent microplate images. | image analysis, macroarray application, fluorescent microarray, fluorescent microplate, radioactive, spot intensity data | is listed by: OMICtools | Restricted | OMICS_00842 | SCR_000321 | 2026-08-13 09:26:09 | 1 | |||||||||
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OpenMM Resource Report Resource Website 10+ mentions |
OpenMM (RRID:SCR_000436) | simulation software, software resource, standalone software, software application | Software toolkit to run modern molecular simulations. It can be used either as a standalone application for running simulations, or as a library that enables accelerated calculations for molecular dynamics on high-performance computer architectures. | modeling, molecular dynamics, molecular simulation |
is used by: CHARMM-GUI is listed by: Simtk.org has parent organization: Stanford University; Stanford; California |
NIGMS U54 GM072970; NIGMS R01 GM062868; NCI P30 CA008748 |
PMID:28746339 PMID:23316124 PMID:38154096 DOI:10.1021/acs.jpcb.3c06662 |
Free, Available for download, Freely available | nif-0000-23334 | https://github.com/openmm/openmm, https://openmm.org/, https://openmm.org/documentation, https://github.com/openmm | https://simtk.org/home/openmm | SCR_000436 | OpenMM 8, OpenMM, OpenMM 7, OpenMM 4 | 2026-08-13 09:26:10 | 12 | ||||
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MNI brain and the Talairach atlas Resource Report Resource Website 50+ mentions |
MNI brain and the Talairach atlas (RRID:SCR_000434) | mni2tal | data or information resource, portal, project portal | Resource that discusses MNI brain, and the difference between the MNI brain and the brain in the Talairach atlas. Approaches to converting MNI coordinates to Talairach coordinates and a few other methods for locating your activation are also presented.Matlab function that transforms MNI coordinates to Talaraich coordinates. The inverse function, tal2mni is also available. | mni coordinate, mri, matlab, talaraich, coordinate |
is used by: Sleuth has parent organization: CBU Imaging Wiki has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
Free, Freely available | SciRes_000110, SCR_001965, nif-0000-10537 | SCR_000434 | 2026-08-13 09:26:10 | 86 |
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