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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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EuMMCR Resource Report Resource Website 10+ mentions |
EuMMCR (RRID:SCR_001506) | EuMMCR | material resource, cell repository, biomaterial supply resource | Embryonic stem cell distribution unit that distributes material arising within European Conditional Mouse Mutagenesis Program consortium, currently targeting vectors and ES cells. Upon user request EUCOMM grow targeting vectors from glycerol stocks and prepare vector DNA. Identity of vector is verified by restriction mapping. Upon user request EUCOMM thaw, expand and re-freeze several aliquots of desired ES cell clone. Standard controls include PCR based assay. Upon additional request EuMMCR unit develops genotyping PCR, which can be used to genotype chimeric mice that may be generated using those ES cell clones. | embryonic stem cell, vector, experimental protocol, male, dna, genotype |
is used by: EUCOMMTOOLS is listed by: One Mind Biospecimen Bank Listing is related to: European Conditional Mouse Mutagenesis Program has parent organization: Helmholtz Center Munich |
Free, Freely available | nlx_152805 | http://www.eummcr.org/ | SCR_001506 | EuMMCR - European Mouse Mutant Cell Repository, European Mouse Mutant Cell Repository | 2026-08-13 09:26:25 | 24 | ||||||
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NBDC - National Bioscience Database Center Resource Report Resource Website 1+ mentions |
NBDC - National Bioscience Database Center (RRID:SCR_000814) | NBDC | data or information resource, organization portal, database, portal | The National Bioscience Database Center (NBDC) intends to integrate all databases for life sciences in Japan, by linking each database with expediency to maximize convenience and make the entire system more user-friendly. We aim to focus our attention on the needs of the users of these databases who have all too often been neglected in the past, rather than the needs of the people tasked with the creation of databases. It is important to note that we will continue to honor the independent integrity of each database that will contribute to our endeavor, as we are fully aware that each database was originally crafted for specific purposes and divergent goals. Services: * Database Catalog - A catalog of life science related databases constructed in Japan that are also available in English. Information such as URL, status of the database site (active vs. inactive), database provider, type of data and subjects of the study are contained for each database record. * Life Science Database Cross Search - A service for simultaneous searching across scattered life-science databases, ranging from molecular data to patents and literature. * Life Science Database Archive - maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata in a unified format, and to access and download the datasets with clear terms of use. * Taxonomy Icon - A collection of icons (illustrations) of biological species that is free to use and distribute. There are more than 200 icons of various species including Bacteria, Fungi, Protista, Plantae and Animalia. * GenLibi (Gene Linker to bibliography) - an integrated database of human, mouse and rat genes that includes automatically integrated gene, protein, polymorphism, pathway, phenotype, ortholog/protein sequence information, and manually curated gene function and gene-related or co-occurred Disease/Phenotype and bibliography information. * Allie - A search service for abbreviations and long forms utilized in life sciences. It provides a solution to the issue that many abbreviations are used in the literature, and polysemous or synonymous abbreviations appear frequently, making it difficult to read and understand scientific papers that are not relevant to the reader's expertise. * inMeXes - A search service for English expressions (multiple words) that appear no less than 10 times in PubMed/MEDLINE titles or abstracts. In addition, you can easily access the sentences where the expression was used or other related information by clicking one of the search results. * HOWDY - (Human Organized Whole genome Database) is a database system for retrieving human genome information from 14 public databases by using official symbols and aliases. The information is daily updated by extracting data automatically from the genetic databases and shown with all data having the identifiers in common and linking to one another. * MDeR (the MetaData Element Repository in life sciences) - a web-based tool designed to let you search, compare and view Data Elements. MDeR is based on the ISO/IEC 11179 Part3 (Registry metamodel and basic attributes). * Human Genome Variation Database - A database for accumulating all kinds of human genome variations detected by various experimental techniques. * MEDALS - A portal site that provides information about databases, analysis tools, and the relevant projects, that were conducted with the financial support from the Ministry of Economy, Trade and Industry of Japan. | life science, research, database, catalog, tool, gene, service, molecule, patent, literature, taxonomy, image, bacteria, fungus, protist, plant, animal, human, mouse, rat, gene, protein, polymorphism, pathway, phenotype, ortholog, protein sequence, gene function, disease, phenotype, bibliography, english expression, human genome, genome, human genome variation, variation, analysis tool |
has parent organization: Japan Science and Technology Agency is parent organization of: Human Variation DB is parent organization of: Japanese Genotype-phenotype Archive (JGA) is parent organization of: ChIP-Atlas |
Japan Science and Technology Agency | nlx_151485 | SCR_000814 | National Bioscience Database Center, National Bioscience Database Center (NBDC) | 2026-08-13 09:26:16 | 3 | |||||||
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NIDDK Inflammatory Bowel Disease Genetics Consortium Resource Report Resource Website 1+ mentions |
NIDDK Inflammatory Bowel Disease Genetics Consortium (RRID:SCR_001461) | IBDGC, NIDDKIBDGC | material resource, cell repository, biomaterial supply resource | Repository of biospecimen and phenotype data collected from Crohn's disease and ulcerative colitis cases and controls recruited at six sites throughout North America that are available to the scientific community. Phenotyping is performed using a standardized protocol, and lymphoblastoid cell lines are established for each subject. Phenotype data for each subject are collected by the Consortium's Data Coordinating Center (DCC), and phenotype data for all subjects with DNA samples are available. The resulting DNA samples have already been utilized by the Consortium to complete various association studies, including genome-wide association studies using dense genotyping arrays. Researchers can obtain DNA samples and phenotype, genotype, and pedigree data through the Data Repository. GWAS data must be requested through dbGAP. The IBDGC is involved with independent genetic research studies and actively works with members of the IBD and genetic communities on collaborative projects. They are also members of the International IBD Genetics Consortium. Phenotype Tools: The Consortium Phenotype Committee, led by Dr. Hillary Steinhart designed and validated paper forms to collect extensive phenotype data on Crohn's Disease and ulcerative colitis. Consortium phenotype tools are available for use by non-Consortium members. | dna, cell line, serum, lymphocyte, lymphoblastoid cell line, gene, loci, genetic analysis, blood, phenotype, genome-wide association study, genotype, pedigree, metadata standard, genotyping array |
uses: NCBI database of Genotypes and Phenotypes (dbGap) is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) has parent organization: Yale School of Medicine; Connecticut; USA |
Inflammatory Bowel Disease, Crohn's disease, Ulcerative colitis, Control, Family member | NIDDK U01 DK062429 | Free, Freely Available | nlx_152706 | http://medicine.yale.edu/intmed/ibdgc/ | SCR_001461 | IBD Genetics Consortium, NIDDKIBD Genetics Consortium, Inflammatory Bowel Disease Genetic Consortium | 2026-08-13 09:26:21 | 3 | ||||
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Bern-Barcelona EEG database Resource Report Resource Website 1+ mentions |
Bern-Barcelona EEG database (RRID:SCR_001582) | Bern-Barcelona EEG database | data or information resource, software resource, source code, data set | THIS RESOURCE IS NO LONGER IN SERVICE, documented November 23, 2020; EEG data set, source code, and results from 7500 signal pairs from 5 epilepsy patients analyzed in the manuscript, Andrzejak RG, Schindler K, Rummel C. Nonrandomness, nonlinear dependence, and nonstationarity of electroencephalographic recordings from epilepsy patients. Phys. Rev. E, 86, 046206, 2012. All Matlab source codes are included in the file ASR_Sources_2012_10_16.zip. The clinical purpose of these recordings was to delineate the brain areas to be surgically removed in each individual patient in order to achieve seizure control. | eeg, electroencephalogram, epilepsy, intracranial, eeg recording, signal, analysis, time series, nonlinear, surrogate signal, surrogate, matlab, focal, non-focal, signal | has parent organization: Pompeu Fabra University; Barcelona; Spain | Epilepsy, Pharmacoresistant focal-onset epilepsy, Seizure | Spanish Ministry of Education and Science grant FIS-2010-18204; Swiss National Science Foundation SNF 320030-122010; Swiss National Science Foundation SNF 33CM30-124089 |
PMID:23214662 | Free, Available for download, Freely available | nlx_153819 | http://ntsa.upf.edu/downloads/andrzejak-rg-schindler-k-rummel-c-2012-nonrandomness-nonlinear-dependence-and, http://www.dtic.upf.edu/~ralph/sc/ | SCR_001582 | 2026-08-13 09:26:23 | 3 | ||||
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Rosalind Resource Report Resource Website 10+ mentions |
Rosalind (RRID:SCR_006233) | Rosalind | open course, training resource, online course | A software infrastructure, course and tool set for teaching bioinformatics, and biology through the use of models. This platform for learning bioinformatics through problem solving aims to make learning bioinformatics fun and easy. Learning bioinformatics usually requires solving computational problems of varying difficulty that are extracted from real challenges of molecular biology. Rosalind offers an array of intellectually stimulating problems that grow in biological and computational complexity; each problem is checked automatically, so that the only resource required to learn bioinformatics is an internet connection. Rosalind also promises to facilitate improvements in standard bioinformatics education by providing a vital teaching aid and a central homework resource. Rosalind is inspired by Project Euler, Google Code Jam, and the ever growing movement of free online courses. The project''s name commemorates Rosalind Franklin, whose X-ray crystallography with Raymond Gosling facilitated the discovery of the DNA double helix by Watson and Crick. We hope that Rosalind will inspire a new generation of bioinformatics students by attracting biologists who want to develop vital programming skills at their own pace in a unique environment as well as programmers who have never been exposed to some of the stimulating computational problems generated by molecular biology. | bioinformatics, biology, model, programming, teaching, course, problem solving, python, algorithm, molecular biology |
is listed by: OMICtools has parent organization: University of California at San Diego; California; USA has parent organization: Saint Petersburg Academic University; Saint Petersburg; Russia |
Howard Hughes Medical Institute ; Ministry of Education and Science of the Russian Federation ; Megagrant |
nlx_151793, OMICS_01709 | SCR_006233 | 2026-08-13 09:27:36 | 39 | ||||||||
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OppNet - Basic Behavioral and Social Science Opportunity Network Resource Report Resource Website 1+ mentions |
OppNet - Basic Behavioral and Social Science Opportunity Network (RRID:SCR_003522) | OppNet | data or information resource, organization portal, funding resource, portal | OppNet is a trans-NIH initiative to expand the agency's funding of basic behavioral and social sciences research (b-BSSR). Basic-BSSR studies mechanisms and processes that influence behavior at the individual, group, community and population level. Research results lead to new approaches for reducing risky behaviors and improving the adoption of healthy practices. The mission of OppNet is to pursue opportunities for strengthening basic behavioral and social science research (b-BSSR) at the NIH while innovating beyond existing investments. * OppNet advances basic behavioral and social science research through activities and initiatives that build a body of knowledge about the nature of behavior and social systems. * OppNet prioritizes activities and initiatives that focus on basic mechanisms of behavior and social processes; that are relevant to the missions and public health challenges of multiple NIH Institutes, Centers and Offices (ICOs); and that build upon existing NIH investments without replicating them. All NIH Institutes and Centers (ICs) share the mission of supporting b-BSSR. OppNet will also develop a plan for focused multi-year programs across ICs to advance priority topics within b-BSSR. | has parent organization: National Institutes of Health | nif-0000-38232 | SCR_003522 | OppNet: Basic Behavioral and Social Science Opportunity Network | 2026-08-13 09:26:51 | 1 | |||||||||
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Donate Life America Resource Report Resource Website 1+ mentions |
Donate Life America (RRID:SCR_000531) | data or information resource, group, portal | Nonprofit alliance of national organizations and state teams dedicated to increasing organ, eye and tissue donation. Donate Life America manages and promotes the national brand for donation, Donate Life, and assists Donate Life State Teams and national partners in facilitating high-performing donor registries; developing and executing effective multi-media donor education programs; and motivating the American public to registeras organ, eye and tissue donors. | tissue, organ, eye, donor, education, promotion, nonprofit |
is parent organization of: OneLegacy is parent organization of: American Donor Services is parent organization of: LifeShare Transplant is parent organization of: Center for Organ Recovery and Education - CORE is parent organization of: Mid-America Transplant Services is parent organization of: LifeGift Organ Donation Center is parent organization of: Gift of Life Donor Program is parent organization of: New York Organ Donor Network - NYODN is parent organization of: Living Legacy Foundation of Maryland is parent organization of: LifeCenter Organ Donor Network is parent organization of: Upstate New York Transplant Services is parent organization of: LifeBanc is parent organization of: LifeLink Foundation is parent organization of: UNOS - United Network for Organ Sharing is parent organization of: Lifeline of Ohio is parent organization of: NMDS - New Mexico Donor Services is parent organization of: Donate Life Louisiana is parent organization of: Central New York Eye and Tissue Bank |
Public | nlx_63855 | SCR_000531 | Donate Life Network, Donate Life Organization, Donate Life | 2026-08-13 09:26:11 | 2 | ||||||||
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International Gene Trap Consortium Resource Report Resource Website 10+ mentions |
International Gene Trap Consortium (RRID:SCR_002305) | IGTC | material resource, cell repository, biomaterial supply resource | Consortium represents all publicly available gene trap cell lines, which are available on non-collaborative basis for nominal handling fees. Researchers can search and browse IGTC database for cell lines of interest using accession numbers or IDs, keywords, sequence data, tissue expression profiles and biological pathways, can find trapped genes of interest on IGTC website, and order cell lines for generation of mutant mice through blastocyst injection. Consortium members include: BayGenomics (USA), Centre for Modelling Human Disease (Toronto, Canada), Embryonic Stem Cell Database (University of Manitoba, Canada), Exchangeable Gene Trap Clones (Kumamoto University, Japan), German Gene Trap Consortium provider (Germany), Sanger Institute Gene Trap Resource (Cambridge, UK), Soriano Lab Gene Trap Resource (Mount Sinai School of Medicine, New York, USA), Texas Institute for Genomic Medicine - TIGM (USA), TIGEM-IRBM Gene Trap (Naples, Italy). | embryo, embryonic, gene, genome, allele, analysis, assay, bioinformatics, blastocyst, cell, colony, consortium, genotyping, hybridization, in situ, international, knockout, murine, mutant, mutation, probe, qpcr, researcher, scientist, sequence, stem cell, tagging, trap, vector, cell line, embryonic stem cell line, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is related to: Centre for Modeling Human Disease Gene Trap Resource has parent organization: University of California at San Francisco; California; USA is parent organization of: International Gene Trap Consortium Pathways |
NCRR P41 RR01081 | PMID:16381950 | Restricted | nif-0000-00036 | https://igtc.org/ | SCR_002305 | International Gene Trap Consortium | 2026-08-13 09:26:34 | 43 | ||||
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Koadarray Resource Report Resource Website 1+ mentions |
Koadarray (RRID:SCR_000321) | image analysis software, data processing software, software resource, software application | A fully automatic array image analysis software which can process single or multiple array images. Koadarray automatically finds the spot locations within each image and quantifies the spot intensity data. It can be used in conjunction with radioactive applications, macroarray applications, fluorescent microarray image analysis and fluorescent microplate images. | image analysis, macroarray application, fluorescent microarray, fluorescent microplate, radioactive, spot intensity data | is listed by: OMICtools | Restricted | OMICS_00842 | SCR_000321 | 2026-08-13 09:26:09 | 1 | |||||||||
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OpenMM Resource Report Resource Website 10+ mentions |
OpenMM (RRID:SCR_000436) | simulation software, software resource, standalone software, software application | Software toolkit to run modern molecular simulations. It can be used either as a standalone application for running simulations, or as a library that enables accelerated calculations for molecular dynamics on high-performance computer architectures. | modeling, molecular dynamics, molecular simulation |
is used by: CHARMM-GUI is listed by: Simtk.org has parent organization: Stanford University; Stanford; California |
NIGMS U54 GM072970; NIGMS R01 GM062868; NCI P30 CA008748 |
PMID:28746339 PMID:23316124 PMID:38154096 DOI:10.1021/acs.jpcb.3c06662 |
Free, Available for download, Freely available | nif-0000-23334 | https://github.com/openmm/openmm, https://openmm.org/, https://openmm.org/documentation, https://github.com/openmm | https://simtk.org/home/openmm | SCR_000436 | OpenMM 8, OpenMM, OpenMM 7, OpenMM 4 | 2026-08-13 09:26:10 | 12 | ||||
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MNI brain and the Talairach atlas Resource Report Resource Website 50+ mentions |
MNI brain and the Talairach atlas (RRID:SCR_000434) | mni2tal | data or information resource, portal, project portal | Resource that discusses MNI brain, and the difference between the MNI brain and the brain in the Talairach atlas. Approaches to converting MNI coordinates to Talairach coordinates and a few other methods for locating your activation are also presented.Matlab function that transforms MNI coordinates to Talaraich coordinates. The inverse function, tal2mni is also available. | mni coordinate, mri, matlab, talaraich, coordinate |
is used by: Sleuth has parent organization: CBU Imaging Wiki has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
Free, Freely available | SciRes_000110, SCR_001965, nif-0000-10537 | SCR_000434 | 2026-08-13 09:26:10 | 86 | ||||||||
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LREC Conferences Resource Report Resource Website 1+ mentions |
LREC Conferences (RRID:SCR_004752) | training resource, meeting resource | The LREC conference has become a major event in the field of language engineering, and constitutes a milestone in the life of Human Language Technologies (HLT). The International Conference on Language Resources and Evaluation is organized by ELRA biennially with the support of institutions and organizations involved in HLT, and brings together a large number of people working and interested in HLT. | has parent organization: European Language Resources Association | nlx_75451 | SCR_004752 | LREC Conference, Language Resources Evaluation Conferences | 2026-08-13 09:27:14 | 3 | ||||||||||
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G2P Knowledge Centre Resource Report Resource Website 10+ mentions |
G2P Knowledge Centre (RRID:SCR_000790) | GEN2PHEN | data or information resource, portal, project portal | Portal of GEN2PHEN project, holistic approach to genotype-to-phenotype data. Aims to unify human and model organism genetic variation databases towards increasingly holistic views into Genotype-To-Phenotype (G2P) data, and to link this system into other biomedical knowledge sources via genome browser functionality. | data-sharing enabler, genotype-phenotype, data federation |
is listed by: 3DVC is related to: BioResource Impact Factor |
European Union FP7 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30605, SCR_013704 | SCR_000790 | GEN2PHEN Knowledge Centre | 2026-08-13 09:26:14 | 16 | ||||||
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Japan Society for the Promotion of Science Resource Report Resource Website 10+ mentions |
Japan Society for the Promotion of Science (RRID:SCR_001085) | JSPS | funding resource, group, regional funding resource | Research and outreach organization dedicated to promoting science, research and education. The society has four main objectives, including building international cooperative networks, enhancing education and research at universities, building evidence-based science-promotion systems and creating diverse world level knowledge. | research, science, promotion, japan, education | nlx_151882 | SCR_001085 | 2026-08-13 09:26:18 | 49 | ||||||||||
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BacPac Resources Center Resource Report Resource Website 100+ mentions |
BacPac Resources Center (RRID:SCR_001520) | BPRC | material resource, reagent supplier | It is the distribution arm of their academic laboratory. They operate on a cost-recovery mechanism in order to make the resources generated in their laboratory available to the academic scientific community. While clones and screening services are widely available, library arrays are primarily available to researchers with a scientific need to analyze most clones in the library. This site contains information on currently available BAC and PAC genomic DNA libraries, BAC Clones, PAC Clones, Fosmid Clones, cDNA collections, high-density colony hybridization filters, and BAC and PAC cloning vectors. Protocols used in our laboratory for the hybridization-based screening of colony filters, purification of BAC and PAC DNA, and end-sequencing methodologies, are also provided. BPRC does not list clones, for two reasons: 1)most clones have not been characterized and lack specific data. 2)all clones are part of libraries and all clones from a particular library share common characteristics. Hence, to find out if BPRC has a particular clone, one needs either use Automatic Clone Validation or else find out if the clone is compatible with the range of clone names for a corresponding clone library. Typically (although not always), clone names are derived from the library name. BPRC uses the NCBI-recommended clone nomenclature & library nomenclature. Most arrayed libraries are available in frozen microtiter dish format to academic and non-academic users provided that there is a scientific need for complete-library access. (for instance to annotate, modify or analyze all BAC clones as part of a genome project). | clones and screening services, library arrays, genomic DNA libraries, BAC Clones, PAC Clones, Fosmid Clones, cDNA collections, BAC and PAC cloning vectors | has parent organization: Childrens Hospital Oakland Research Institute | Free, Freely available | nif-0000-09578, SCR_007215, nlx_152819 | http://bacpac.chori.org/ | SCR_001520 | BacPac Resources Center: BAC Clones Distribution Center, BAC Clones Distribution Center, BACPAC Resources Center | 2026-08-13 09:26:25 | 459 | ||||||
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Washington University Neuromuscular Disease Center Resource Report Resource Website 10+ mentions |
Washington University Neuromuscular Disease Center (RRID:SCR_002059) | WU Neuromuscular | data or information resource, organization portal, portal | Organization portal for neuromuscular disease community and contains comprehensive listing of biological and clinical aspects of neuromuscular disorders.This knowledge base contains information on the physiology, structure of ion channels, neurotransmitters, neuroreceptors, and associated diseases. Major categories include DISORDERS & SYNDROMES, INDEXES, NEUROMUSCULAR EVALUATION, ANTIBODY TESTING and NEUROMUSCULAR DIVISION. | neuromuscular disease, cerebellum, motor cortex, spinal cord | has parent organization: Washington University in St. Louis; Missouri; USA | Free, Freely available | nif-0000-00158, SCR_007305, nif-0000-12503 | http://neuromuscular.wustl.edu/over/overview.html | http://www.neuro.wustl.edu/neuromuscular/ | SCR_002059 | Neuromuscular Disease Center | 2026-08-13 09:26:30 | 25 | |||||
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Neural ElectroMagnetic Ontologies (NEMO) Project Resource Report Resource Website 10+ mentions |
Neural ElectroMagnetic Ontologies (NEMO) Project (RRID:SCR_002001) | NEMO | data or information resource, portal, project portal | THIS RESOURCE IS NO LONGER IN SERVICE. NIH tombstone webpage lists Project Period : 2009 - 2013. NIH funded project to create EEG and MEG ontologies and ontology based tools. These resources will be used to support representation, classification, and meta-analysis of brain electromagnetic data. Three pillars of NEMO are: DATA, ONTOLOGY, and DATABASE. NEMO data consist of raw EEG, averaged EEG (ERPs), and ERP data analysis results. NEMO ontologies include concepts related to ERP data (including spatial and temporal features of ERP patterns), data provenance, and cognitive and linguistic paradigms that were used to collect data. NEMO database portal is large repository that stores NEMO consortium data, data analysis results, and data provenance. EEG and MEG ontologies and ontology-based tools to support representation, classification, and meta-analysis of brain electromagnetic data. Raw EEG and ERP data may be uploaded to the NEMO FTP site., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | annotation, classification, labeling, eeg, event-related potential, meg, rdf, metadata standard, decomposition, segmentation, extraction, brain, electromagnetic, electrocorticography, information specification, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Oregon; Oregon; USA is parent organization of: NEMO Ontology |
PMID:22180824 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10899 | http://www.nitrc.org/projects/nemo, https://sourceforge.net/projects/nemoontologies/ | http://nemo.nic.uoregon.edu | SCR_002001 | Neural ElectroMagnetic Ontologies | 2026-08-13 09:26:32 | 25 | ||||
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Mspire-Simulator Resource Report Resource Website 1+ mentions |
Mspire-Simulator (RRID:SCR_001431) | simulation software, software resource, standalone software, software application | A free, open-source shotgun proteomic simulator that goes beyond previous simulation attempts by generating LC-MS features with realistic m/z and intensity variance along with other noise components. | standalone software, shotgun, proteomic, simulation software, bio.tools |
uses: mzML is listed by: OMICtools is listed by: GitHub is listed by: bio.tools is listed by: Debian has parent organization: Brigham Young University; Utah; USA |
PMID:24090032 | Free, Freely Available | biotools:mspire-simulator, OMICS_03359 | https://bio.tools/mspire-simulator | SCR_001431 | 2026-08-13 09:26:21 | 1 | |||||||
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Office of Research on Womens Health: Reseach Resource Report Resource Website 1+ mentions |
Office of Research on Womens Health: Reseach (RRID:SCR_001822) | data or information resource, organization portal, portal | The mission of the Office of Research on Women's Health (ORWH) is to stimulate and encourage meritorious research on women's health, including the role of sex and gender in health and disease. The priorities signify approaches and areas for which there is a need to stimulate and encourage research on women's health, or sex/gender factors, and the advancement of women in biomedical research careers. These research priorities are not an exclusive list of research areas important to women's health; therefore other innovative or significant research areas should also be considered. The following four overarching themes are important for addressing research on women's health: Lifespan, Sex/Gender Determinants, Health Disparities/Differences and Diversity, ad Interdisciplinary Research. Special Areas of Emphasis - Prevention/Treatment: from basic biological factors, including identifying and validating biomarkers, to risk and its applications to disease prevention, early detection, and treatment. - Sex and Genetics/Pharmacogenomics: genetic, molecular, and cellular basis for action of pharmacologic agents known to have different effects in females than in males. Research on effects of sex as a modifier of gene function and response is under-investigated. Sponsors: This research is funded by the NAtional Institutes of Health. | function, gender, gene, genetic, biological, biomarker, biomedical, cellular, determinant, disease, disparity, diversity, heath, molecular, pharmacogenomics, prevention, sex, treatment, woman | Free | nif-0000-10387 | http://orwh.od.nih.gov/research.html | SCR_001822 | ORWH Research | 2026-08-13 09:26:26 | 1 | ||||||||
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BAliBASE Resource Report Resource Website 10+ mentions |
BAliBASE (RRID:SCR_001940) | BAliBASE | data or information resource, software resource, source code, data set |
A collection of high quality multiple sequence alignments for objective, comparative studies of alignment algorithms. The alignments are constructed based on 3D structure superposition and manually refined to ensure alignment of important functional residues. A number of subsets are defined covering many of the most important problems encountered when aligning real sets of proteins. It is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Version 2.0 of the database incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences. Within the resource, users can look at a list of all the alignments, download the whole database by ftp, get the "c" program to compare a test alignment with the BAliBASE reference (The source code for the program is freely available), or look at the results of a comparison study of several multiple alignment programs, using BAliBASE reference sets. |
benchmark alignment, circular permutation, transmembrane sequence, multiple sequence alignment, benchmark, reference alignment, sequence alignment, sequence, alignment |
is listed by: OMICtools has parent organization: University of Strasbourg; Strasbourg; France |
PMID:16044462 PMID:11125126 PMID:10068696 |
Free, Available for download, Freely available | nif-0000-02594, OMICS_00971 | http://www-bio3d-igbmc.u-strasbg.fr/balibase/, http://www-igbmc.u-strasbg.fr/BioInfo/BAliBASE2/index.html | SCR_001940 | Benchmark Alignment dataBASE | 2026-08-13 09:26:30 | 28 |
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