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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Q Squared Solutions Expression Analysis
 
Resource Report
Resource Website
1+ mentions
Q Squared Solutions Expression Analysis (RRID:SCR_012497) Q2 Solutions, EA, Q squared solutions, Q2, Q squared core facility, commercial organization, service resource, access service resource Core provides whole genome to focused set gene expression and genotyping assays along with DNA sequencings services, sequence enrichment technologies and bioinformatics support. Platforms utilized include Affymetrix GeneChip, Agilent Sure Select, Fluidigm Access Arrays, Illumina BeadChip, iScan, Genome Analyzer and Hi-Seq, RainDance Technologies RDT 1000 and, the Pacific Biosciences PacBio RS. Expression Analysis offers solutions for challenging specimens such as whole blood and FFPE tissues, as well as nucleic acid isolation and data analysis services. genomic, genotyping, DNA sequencing, is listed by: ScienceExchange
has parent organization: Quintiles
Available to external user SciEx_366 http://www.scienceexchange.com/facilities/expression-analysis SCR_012497 Q2 Solutions Expression Analysis, Q 2 Solutions Expression Analysis, Q 2 Expression Analysis 2026-08-13 09:28:43 1
LSU Pennington Biomedical Research Center Labs and Facilities
 
Resource Report
Resource Website
LSU Pennington Biomedical Research Center Labs and Facilities (RRID:SCR_012537) LSU Pennington Biomedical Research Center Labs and Facilities data or information resource, service resource, portal THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 2,2024. Opened in 1988, the Pennington Center now houses 53 laboratories that span the Center''''s three programs - Basic Research, Clinical Research, and Population Science - nineteen Core Service laboratories, inpatient and outpatient clinics, a research kitchen, an administrative area, and more than $20 million in technologically advanced equipment. The Center was expanded in 1993 to include the C.B. Pennington Jr. Conference Center, now the C.B. Pennington Jr. Building, residence apartments, and an exercise and fitness facility. More than 80 faculty members and over 600 physicians, scientists, and support personnel focus their research efforts on 10 research program areas: Epidemiology and Prevention, Physical Activity and Health, Cancer, Diabetes, Obesity, Neurodegeneration, Genomics and Molecular Genetics, Stem Cell and Developmental Biology, Neurobiology, and Nutrient Sensing and Signaling. The Pennington Center is led by Dr. Steven B. Heymsfield, formerly of Merck Pharmaceuticals, who specializes in clincal research. The Center''''s funding is broad-based. The foundation is provided by an annual appropriation from the State of Louisiana. Additional funding is provided by grants and contracts from the National Institutes of Health, the U.S. Department of Agriculture, the U.S. Department of Defense, and private sector organizations and companies. The Pennington Medical Foundation and Pennington Biomedical Research Foundation are also major financial resources. The Pennington Medical Foundation is charged with administering the original donation and subsequent gifts from the C.B. Pennington family and establishing guidelines for investments and expenditures. is listed by: ScienceExchange
is related to: Louisiana State University Labs and Facilities
has parent organization: Louisiana State University; Louisiana; USA
is parent organization of: LSU Genomics Core Facility
is parent organization of: LSU Cell Biology and Bioimaging Core
THIS RESOURCE IS NO LONGER IN SERVICE SciEx_4439 SCR_012537 Louisiana State University Pennington Biomedical Research Center Labs and Facilities, Louisiana State University Pennington Biomedical Research Center Labs & Facilities 2026-08-13 09:28:54 0
Northwestern University Cognitive Neurology and Alzheimers Disease Center
 
Resource Report
Resource Website
1+ mentions
Northwestern University Cognitive Neurology and Alzheimers Disease Center (RRID:SCR_012747) CNADC, NU CNADC topical portal, data or information resource, disease-related portal, funding resource, training resource, portal The Cognitive Neurology and Alzheimer's Disease Center (CNADC) is a multidisciplinary organization dedicated to conducting research to discover how the brain coordinates mental functions such as memory, language, attention, and emotion; transferring the benefits of this research to patients with brain diseases that impair cognitive function; and training researchers and clinicians who want to work in this field. The CNADC's mission is to investigate the neurological basis of cognitive function, to elucidate causes of dementia, and to ensure that the patients and their families are the beneficiaries of resultant discoveries. * Clinical Services: Neurobehavior and Memory Health Clinical Services * Annual Grant Opportunities: Annual Core Pilot Project Funding Opportunities * Research Areas & Faculty: Alzheimer's Disease / Primary Progressive Aphasia / Frontal Dementia, Brain Endowment (Brains are permanently stored, and requests for tissue for research purposes are submitted to Dr. Bigio for review by the Northwestern Alzheimer's Disease Center); Cognitive Brain Mapping Group, Volunteer For A Study * Fellowships: Neuropathology Fellowship, Behavioral Neurology & Neuropsychiatry Fellowship * Training Programs: Mechanisms of Aging and Dementia (M.A.D.) Training Program; Training Program in the Neuroscience of Human Cognition brain, cognitive neurology, memory, language, attention, emotion, cognitive function, late adult human, alzheimer's disease, cognitive decline, dementia has parent organization: Northwestern University Feinberg School of Medicine; Illinois; USA
is parent organization of: Northwestern CNADC Tissue Bank / Neuropathology Core
Alzheimer's disease NIA Public nlx_18263 SCR_012747 Cognitive Neurology and Alzheimers Disease Center, Northwestern University Cognitive Neurology and Alzheimer's Disease Center 2026-08-13 09:28:42 4
AASLD - American Association for the Study of Liver Diseases
 
Resource Report
Resource Website
AASLD - American Association for the Study of Liver Diseases (RRID:SCR_012900) AASLD topical portal, data or information resource, portal A non-profit organization of scientists and healthcare professionals committed to preventing and curing liver disease, which runs three journals and an annual meeting. Its mission is to Advance the Science and Practice of Hepatology, Liver Transplantation and Hepatobiliary Surgery, Thereby Promoting Liver Health and Optimal Care of Patients with Liver and Biliary Tract Diseases. AASLD was founded in 1950 by a small group of leading liver specialists (including Hans Popper, Leon Schiff, Fred Hoffbauer, Cecil Watson, Jesse Bollman, and Sheila Sherlock, to name a few) to bring together those who had contributed to the field of hepatology. AASLD has grown to an international society responsible for all aspects of hepatology, and our annual meeting, The Liver Meeting, has grown in attendance from 12 to over 7,000 physicians, surgeons, researchers, and allied health professionals from around the world. AASLD sponsors two to four Single Topic Conferences each year in clinical, basic, hepatitis, or pediatric hepatology. Our two monthly journals, HEPATOLOGY and Liver Transplantation, provide the latest research findings for hepatology and surgery of the liver. AASLD''s membership includes ALL professionals dedicated to hepatobiliary discoveries and patient care. Mentoring, the sharing of knowledge, and dedication to professional growth and development are among the core values of AASLD and its members. hepatology, liver transplantation, liver, transplantation is parent organization of: American Liver Foundation Liver disease nlx_149391 SCR_012900 American Association for the Study of Liver Diseases 2026-08-13 09:28:48 0
Zebra Finch Expression Brain Atlas
 
Resource Report
Resource Website
10+ mentions
Zebra Finch Expression Brain Atlas (RRID:SCR_012988) ZEBrA data or information resource, database, atlas, expression atlas Expression atlas of in situ hybridization images from large collection of genes expressed in brain of adult male zebra finches. Goal of ZEBrA project is to develop publicly available on-line digital atlas that documents expression of large collection of genes within brain of adult male zebra finches. gene, expression, brain, in-situ, hybridization, taeniopygia, vocal learning, anatomical, atlas, data set, molecular neuroanatomy, adult, male, gene, image, bird, image, avian has parent organization: Oregon Health and Science University; Oregon; USA NINDS R03 NS059755;
NIGMS R24 GM092842
Free, Freely available nif-0000-24345, SCR_000641, nlx_152091 http://ignrhnet.ohsu.edu/finch/songbird/index.php SCR_012988 zebra, , Zebra Finch Expression Brain Atlas, atlas, Zebra Finch Brain Atlas, ZEBrA, finch 2026-08-13 09:28:48 42
Traumatic Brain Injury Clinical Trials Network
 
Resource Report
Resource Website
Traumatic Brain Injury Clinical Trials Network (RRID:SCR_013165) TBI Clinical Trials Network topical portal, data or information resource, disease-related portal, knowledge environment, research forum portal, portal The National Center for Medical Rehabilitation Research (NCMRR) established a multi-center network of sites that are working together to design clinical intervention protocols and measures of outcome for TBI. Through rigorous patient evaluation, using common protocols and interventions designed for multiple points of care����??including the accident scene, emergency room, intensive care unit, rehabilitation and long-term follow-up����??the NCMRR TBI Clinical Trials Network can study the required numbers of patients to provide answers more rapidly than individual centers acting alone. This interdisciplinary research Network is designed to evaluate the relationship among acute care practice, rehabilitation strategies, and the long-term functional outcome of TBI patients����??that is, to identify which intervention variables result in improvements in long-term outcomes. Taking advantage of the network model structure has allowed TBI research to progress toward a number of clinical research goals. Specifically, the NCMRR wants to highlight two major achievements to date. First, the TBI Network created a profile of its typical patient to determine the number of patients with different clinical features who might be eligible for future studies and to help estimate recruitment times necessary. Second, Network researchers are developing clinical treatment guidelines and procedures for all points in the continuum of care, including TBI Clinical Trials Network Guidelines for surgical care, systems-based protocol for severe and moderate TBI patients, deep-vein thrombosis prophylaxis procedures, and rehabilitation guidelines for physical therapy, speech-language pathology, occupational therapy, and neuropsychology. traumatic brain injury, clinical, research, clinical trial, outcome, intervention, one mind tbi has parent organization: National Institute of Child Health and Human Development Traumatic Brain Injury NCMRR nlx_143904 http://www.nichd.nih.gov/research/supported/TBI.cfm SCR_013165 NCMRR TBI Clinical Trials Network, Traumatic Brain Injury (TBI) Clinical Trials Network 2026-08-13 09:28:46 0
Multivariate Analysis of Transcript Splicing
 
Resource Report
Resource Website
100+ mentions
Multivariate Analysis of Transcript Splicing (RRID:SCR_013049) MATS data analysis software, data processing software, software resource, software application Software tool to detect differential alternative splicing events from RNA-Seq data. Calculates P value and false discovery rate that difference in isoform ratio of gene between two conditions exceeds given user defined threshold. Can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. Handles replicate RNA-Seq data from both paired and unpaired study design. Differential alternative splicing events, splicing events calculation, RNA-Seq data, gene isoform ratio, alternative splicing patterns, patterns detection, patterns analysis, replicate RNA-Seq data is listed by: OMICtools
is listed by: SourceForge
has parent organization: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA
Free, Available for download, Freely available OMICS_01336, SCR_020941 SCR_013049 RNAseq MATS, RMATS, rMATS, MATS, RNA MATS 2026-08-13 09:28:44 203
Bioconductor mailing list
 
Resource Report
Resource Website
1+ mentions
Bioconductor mailing list (RRID:SCR_012915) Bioconductor mailing list narrative resource, feed, listserv, data or information resource This mailing list is for announcements about Bioconductor and the availability of new code and questions and answers about problems and solutions using Bioconductor. is listed by: OMICtools
has parent organization: Bioconductor
OMICS_01705 SCR_012915 2026-08-13 09:28:43 2
NCBI Assembly Archive Viewer
 
Resource Report
Resource Website
100+ mentions
NCBI Assembly Archive Viewer (RRID:SCR_012917) NCBI Assembly Archive Viewer data or information resource, service resource, data repository, storage service resource, data set Database providing information on structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data. The Archive links the raw sequence information found in the Trace Archive with assembly information found in publicly available sequence repositories (GenBank/EMBL/DDBJ). sequence alignment, sequence chromatogram, assembly, virus is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: OMICtools
is related to: GenBank
is related to: Trace Archive
is related to: DNA DataBank of Japan (DDBJ)
is related to: European Nucleotide Archive (ENA)
OMICS_00890, r3d100012688 http://www.ncbi.nlm.nih.gov/assembly, https://doi.org/10.17616/R31NJMA8 http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi SCR_012917 Assembly Archive Viewer, NCBI Assembly, Assembly 2026-08-13 09:29:02 313
GRASSIUS
 
Resource Report
Resource Website
10+ mentions
GRASSIUS (RRID:SCR_012999) GRASSIUS data or information resource, analysis service resource, production service resource, database, service resource, data repository, storage service resource, data analysis service A public resource composed of a collection of databases, computational and experimental resources that relate to the control of gene expression in the grasses, and their relationship with agronomic traits. As knowledge on the interactions of transcription factors (TFs) and cis-regulatory elements in the promoters of the genes that they regulate continues to accumulate, the information is acquired by GRASSIUS, either through contributions by the community, or by literature analysis. The overarching objective of GRASSIUS is to provide a one-stop resource that will facilitate research and communication within the plant community with regards to genome-wide regulation of gene expression processes. transcription factor, coregulator, promoter sequence, transcription factor orf clone, blast, genome browser is listed by: OMICtools
has parent organization: Ohio State University; Ohio; USA
NSF PMID:18987217 Free OMICS_00555 SCR_012999 Grass Regulatory Information Server 2026-08-13 09:29:03 32
Genolevures
 
Resource Report
Resource Website
10+ mentions
Genolevures (RRID:SCR_013173) data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. It provides annotated sequence data and classifications for the genomes of eighteen species of hemiascomycete yeasts, including nine complete genomes. The Gnolevures web resources provides genetic element pages, orthologs defined by syntenic homology, protein families, a genome browser for interspecies comparison, and data sets for downloading. An advanced search facility permits a number of criterion-based and full text queries. Classification data, including protein families and orthologs, and the most up-to-date genome annotations, are for the most part not available in general-purpose sequence data bases such as EMBL/GenBank/DDBJ. hemiascomycete yeast, protein family is listed by: LabWorm
is related to: French National Center for Scientific Research
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-21161, nif-0000-02862, SCR_013203 SCR_013173 Gnolevures 2026-08-13 09:29:03 13
UM Sylvester Comprehensive Cancer Center Labs and Facilities
 
Resource Report
Resource Website
UM Sylvester Comprehensive Cancer Center Labs and Facilities (RRID:SCR_012720) UM Sylvester Comprehensive Cancer Center Labs & Facilities data or information resource, organization portal, portal THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 23,2024. With more than 250 physicians and scientists dedicated to cancer care and research, Sylvester is leading the search for a cancer cure. Every day, our physicians and scientists within the cancer center''''s site disease groups and multidisciplinary research programs, are discovering exciting new breakthroughs that are quickly transforming the way cancer patients are diagnosed and treated. is listed by: ScienceExchange
is related to: University of Miami Labs and Facilities
has parent organization: University of Miami; Florida; USA
THIS RESOURCE IS NO LONGER IN SERVICE SciEx_8929 SCR_012720 University of Miami Sylvester Comprehensive Cancer Center Labs and Facilities, University of Miami Sylvester Comprehensive Cancer Center Labs & Facilities 2026-08-13 09:28:41 0
3D Brain
 
Resource Report
Resource Website
3D Brain (RRID:SCR_013138) 3D Brain data or information resource, narrative resource, software application, training material, mobile app, software resource iPhone and iPad app that provides a good overview of the brain and its structures allowing you to rotate and zoom around 29 interactive structures with your touch screen. Discover how each brain region functions, what happens when it is injured, and how it is involved in mental illness. Each detailed structure comes with information on functions, disorders, brain damage, case studies, and links to modern research. Compatible with iPhone, iPod touch and iPad. Requires iOS 3.0 or later. neuroanatomy, brain, gross neuroanatomy is related to: Genes to Cognition Online
has parent organization: Cold Spring Harbor Laboratory
The Dana Foundation ;
Hewlett Foundation
Free nlx_152078 SCR_013138 2026-08-13 09:29:03 0
Advanced Analytical Testing Service
 
Resource Report
Resource Website
Advanced Analytical Testing Service (RRID:SCR_012723) AATS, A.A.T.S. core facility, commercial organization, service resource, access service resource Advanced Analytical Testing Service (AATS) is dedicated to providing premium testing services for food, dietary supplement, biotechnology and cosmetic industries. AATS is established on our clients'' greatest satisfaction with our sample processing, testing method development and post-testing consultation. Our goal is to report authentic and accurate testing results with optimal quality and minimum turnover time. AATS is FDA registered independent analytical testing provider that is familiar with cGMP, USP and ISO standards. AATS has established full quality system on personnel, training, sample receipt and handling, testing, quality control and documentation. We provide testing results of high quality, because we have a strong quality system built in our testing facilities. is listed by: ScienceExchange SciEx_8973 SCR_012723 Advanced Analytical Testing Service (AATS), Advanced Analytical Testing Service (A.A.T.S.) 2026-08-13 09:28:41 0
Michigan State University College of Veterinary Medicine
 
Resource Report
Resource Website
Michigan State University College of Veterinary Medicine (RRID:SCR_012848) data or information resource, organization portal, institution, university, portal The college includes four biomedical science departments -- microbiology and molecular genetics, pathobiology and diagnostic investigation, pharmacology and toxicology, and physiology; two clinical departments -- large-animal clinical sciences and small-animal clinical sciences; two service units -- the Veterinary Teaching Hospital and the Diagnostic Center for Population and Animal Health; and several research centers. In addition to the Doctor of Veterinary Medicine degree program, the college also offers certificate and bachelors degree programs in veterinary technology, as well as advanced degree (masters and doctor of philosophy) programs. The mission of the College of Veterinary Medicine is to develop a diverse academic community that fosters scholarly activity and encourages exemplary human qualities in order that the art and science of veterinary medicine may be imparted to students, expanded by research, and extended to the public for the benefit of animal and human health to meet the changing needs of Michigan, the nation, and the world. The College of Veterinary Medicine is fortunate to have an outstanding faculty, all of whom hold the doctor of veterinary medicine degree and/or the doctor of philosophy degree. Nearly all of the specialty boards recognized by the American Veterinary Medical Association are represented on the faculty. Many of these faculty members are leaders in their fields, both nationally and internationally. Michigan State has a long-standing commitment to equal opportunity, affirmative action, and multiculturalism. The College of Veterinary Medicine has attained national recognition for its leadership in programs for the encouragement of underrepresented groups at the preprofessional, professional, and advanced studies levels, as well as for increased diversity in its faculty. Special opportunities for preveterinary and professional students to participate in international veterinary activities further expand appreciation of different cultures. Indeed, international experience and opportunities abound in the college for both faculty and students. Nearly 300 individuals associated with the college have been involved in activities in 36 countries. A special endowment provides funds to support student travel abroad. The abundance and variety of animal agriculture and companion animals in Michigan provides the college with one of the largest clinical and diagnostic caseloads in the country. Educational and research opportunities are considerably enhanced by this large caseload. The college also takes seriously its obligation to meet the needs of society in addition to clinical services and education. The college has expertise in public health, biomedical and comparative medical research, ecosystem and environmental management, and the multiple facets that compose our complex global food system. CVM also supports key animal health programs conducted by both the Michigan Department of Agriculture and the U.S. Department of Agriculture. has parent organization: Michigan State University; Michigan; USA nlx_43774 SCR_012848 CVM 2026-08-13 09:28:43 0
NGSmethDB
 
Resource Report
Resource Website
1+ mentions
NGSmethDB (RRID:SCR_012847) NGSmethDB data or information resource, database, service resource, data repository, storage service resource A dedicated database for the storage, browsing and data mining of whole-genome, single-base-pair resolution methylomes. bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
PMID:20965971 OMICS_01844, biotools:ngsmethdb https://bio.tools/ngsmethdb SCR_012847 NGSmethDB - A database for NGS single-cytosine-resolution DNA methylation data 2026-08-13 09:28:48 9
Neuroimaging in Python
 
Resource Report
Resource Website
10+ mentions
Neuroimaging in Python (RRID:SCR_013141) NIPY, data or information resource, software application, community building portal, software resource, software development tool, portal, software development environment Community site to make brain imaging research easier that aims to build software that is clearly written, clearly explained, a good fit for the underlying ideas, and a natural home for collaboration. brain, imaging, neuroimaging, analysis, python, fmri, fmri analysis, magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Python Programming Language
has parent organization: SourceForge
has parent organization: University of California at Berkeley; Berkeley; USA
has parent organization: Massachusetts Institute of Technology; Massachusetts; USA;
is parent organization of: Dipy
is parent organization of: NiLearn
is parent organization of: NIPY
is parent organization of: NiBabel
is parent organization of: Nipype
is parent organization of: Nitime
NIMH 5R01MH081909-02;
NIBIB 1R03EB008673-01
PMID:21897815 Revised BSD license nlx_149365 http://www.nitrc.org/projects/nipy-community http://www.nitrc.org/projects/nipype SCR_013141 NIPY Community 2026-08-13 09:28:49 27
Harvard NeuroDiscovery Center Labs and Facilities
 
Resource Report
Resource Website
Harvard NeuroDiscovery Center Labs and Facilities (RRID:SCR_012695) HNDC Labs & Facilities data or information resource, core facility, service resource, access service resource, portal Established in 2001 by Dr. Joseph Martin (Dean of Harvard Medical School, 1997-2007), the Harvard NeuroDiscovery Center is a pioneering biomedical research group focused on ending suffering from neurodegenerative diseases. By drawing on the intellectual strength and proven capability of the Harvard medical community and colleagues throughout the world, the NeuroDiscovery Center has developed a unique approach to understanding and treating these devastating diseases. is listed by: ScienceExchange
is related to: HNDC Enhanced NeuroImaging Core
is related to: HNDC NeuroBehavior Laboratory Core
is related to: HNDC Advanced Tissue Resource Center
has parent organization: Harvard Medical School; Massachusetts; USA
SciEx_8885 SCR_012695 Harvard Medical School NeuroDiscovery Center Labs and Facilities, Harvard Medical School NeuroDiscovery Center Labs & Facilities 2026-08-13 09:29:00 0
Georgetown University Labs and Facilities
 
Resource Report
Resource Website
Georgetown University Labs and Facilities (RRID:SCR_012694) Georgetown Labs & Facilities, Georgetown Labs and Facilities data or information resource, core facility, service resource, access service resource, portal An Portal, Core facility is listed by: ScienceExchange
has parent organization: Georgetown University; Washington D.C.; USA
SciEx_893 SCR_012694 Georgetown University Labs & Facilities 2026-08-13 09:28:41 0
Baltimore Longitudinal Study of Aging (BLSA)
 
Resource Report
Resource Website
Baltimore Longitudinal Study of Aging (BLSA) (RRID:SCR_013148) BLSA topical portal, data or information resource, disease-related portal, database, research forum portal, portal America''s longest-running scientific study of human aging, begun in 1958. BLSA scientists are learning what happens as people age and how to sort out changes due to aging from those due to disease or other causes. More than 1,400 men and women are study volunteers. They range in age from their 20s to their 90s. This study is currently recruiting healthy seniors over 70. late adult human, adult, healthy, clinical data, middle adult human, disease, clinical study has parent organization: Intramural Research Program Aging, Healthy NIA nlx_144413 http://www.grc.nia.nih.gov/branches/blsa/blsa.htm SCR_013148 Baltimore Longitudinal Study of Aging 2026-08-13 09:28:49 0

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