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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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pyLMM Resource Report Resource Website 10+ mentions |
pyLMM (RRID:SCR_014525) | data analysis software, data processing software, software application, standalone software, software resource | A Python package for doing linear mixed model associations in genome wide association studies (GWAS). The software corrects for population structure using EMMA. | python, data analysis software, linear mixed model, genome wide association studies, gwas, lmm, emma | DOI:10.1534/genetics.107.080101 | Install using pip | SCR_014525 | 2026-08-13 09:29:03 | 12 | ||||||||||
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Lifestyle Interventions for Expectant Moms (LIFE-Moms) Resource Report Resource Website |
Lifestyle Interventions for Expectant Moms (LIFE-Moms) (RRID:SCR_014376) | LIFE-Moms | data or information resource, organization portal, resource, portal | A consortium whose overall goal is to identify effective behavioral and lifestyle interventions that will improve weight, glycemic control and other pregnancy-related outcomes in obese and overweight pregnant women, and determine whether these interventions reduce obesity and metabolic abnormalities in their children. The study/consortium is comprised of seven clinical centers, with each clinical center conducting its own trial. Additional information on the consortium and individual trials is located in the Consortium Summaries tab. | pregnant, pregnancy, obesity, metabolic abnormality, behavioral intervention, lifestyle intervention, clinical trial |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources |
Obesity | NIDDK ; NHLBI ; NICHD ; National Center for Complementary and Integrative Health ; Office of Research on Womens Health ; Office of Behavioral and Social Sciences Research |
Synopses available, Users may access trial data at clinicaltrial.gov | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014376 | Lifestyle Interventions for Expectant Moms | 2026-08-13 09:29:02 | 0 | |||||
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VitalView Software Resource Report Resource Website 10+ mentions |
VitalView Software (RRID:SCR_014497) | data processing software, software application, data analytics software, data acquisition software, software resource | A data acquisition and analysis software program. The program collects data from sensors and receivers and displays graphical data analysis as well as descriptive statistics. | data acquisition, data analysis | PMID:12213503 | Commercial | SCR_014497 | 2026-08-13 09:29:11 | 16 | ||||||||||
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Mercator Resource Report Resource Website 500+ mentions |
Mercator (RRID:SCR_014493) | data analysis software, data processing software, software resource, software application | A software package for quantification of histological sections. This software performs functions including: management and analysis of regions of interest, annotations, statistical analysis, and 3D visualization. These results are edited in an Excel-compatible spreadsheet. | histology analysis, image analysis, statistical analysis, 3d visualization, excel | Commercial | SCR_014493 | 2026-08-13 09:29:11 | 692 | |||||||||||
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ImageMagick Resource Report Resource Website 100+ mentions |
ImageMagick (RRID:SCR_014491) | image processing software, data processing software, software resource, software application | Software suite for creating, editing, composing, and converting bitmap images. It can read and write images in over 200 formats including PNG, JPEG, JPEG-2000, GIF, TIFF, DPX, EXR, WebP, Postscript, PDF, and SVG. The user can use this software to resize, flip, mirror, rotate, distort, shear and transform images, adjust image colors, apply various special effects, or draw text, lines, polygons, ellipses and Bézier curves. | image editing, image processing software, image analysis software, bitmap, adjust image colors, bezier curves | is listed by: Debian | Restricted | https://sources.debian.org/src/imagemagick/ | SCR_014491 | 2026-08-13 09:29:02 | 140 | |||||||||
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Muse: Portable Scalp EEG Device (Muse S Athena) Resource Report Resource Website 100+ mentions |
Muse: Portable Scalp EEG Device (Muse S Athena) (RRID:SCR_014418) | mobile app, software resource, instrument resource, software application | It is a portable scalp electroencephalography (EEG) system that can be used to measure brain activity. It is battery powered and has four active electrodes located at 10-20 coordinates TP9, AF7, AF8, and TP10, a common mode reference, and a driven right leg. It includes an accelerometer and gyroscope, and works with desktop and mobile EEG acquisition and visualization software. Muse 2 expands upon the first model with increasingly robust hardware. | portable, scalp electroencephalography, brain activity, mobile app, data acquisition software, data analysis software | Ontario Centres of Excellence ; Natural Sciences and Engineering Research Council of Canada |
DOI:10.1371/journal.pone.0130129 | Public, Commercial product, Headband requires purchase, App is free | SCR_014418 | , Muse 2, Muse: the brain sensing headband | 2026-08-13 09:29:10 | 326 | ||||||||
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FlexField Software Resource Report Resource Website 1+ mentions |
FlexField Software (RRID:SCR_014420) | systems interoperability software, software resource, standalone software, software application | Transformation software designed to help model and change Oracle account charts. This can be used to reorganize Oracle accounts due to events such as mergers, acquisitions, regulatory requirements and the need for more ranges when the data outgrows the range of the current chart of accounts. FlexField transforms an existing accounting flexfield segment structure, values, code combinations, and CCIDs according to user mappings, and applies the new code combinations and CCIDs. It propagates the change throughout an existing E-Business Suite data, everywhere the accounting flexfield is used. It removes the old code combinations and CCIDs, and aligns the new Chart of Accounts (COA) so that all balances belonging to a single CCID are summarized into a single line. | software, oracle, ccid, account chart, segment structure, accounting, chart of accounts | Commercial product, License fee | SCR_014420 | 2026-08-13 09:29:02 | 2 | |||||||||||
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Clinical Islet Transplantation Consortium (CITC) Resource Report Resource Website 1+ mentions |
Clinical Islet Transplantation Consortium (CITC) (RRID:SCR_014385) | CITC, CIT | service resource, access service resource | Network of clinical centers and a data coordinating center established to conduct studies of islet transplantation in patients with type 1 diabetes. | type 1 diabetes, consortium, network, islet transplantation, clinical |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is listed by: Diabetes Research Centers |
Type 1 diabetes, Diabetes | NIDDK U01 DK070431; NIAID |
SCR_014385 | Clinical Islet Transplantation Consortium | 2026-08-13 09:29:10 | 1 | |||||||
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Navios Software Resource Report Resource Website 1+ mentions |
Navios Software (RRID:SCR_014421) | data analysis software, data processing software, software application, data acquisition software, software resource | Used in tandem with the Navios Flow Cytometer in order to acquire data for use in analyzing cellular characteristics. | flow cytometry, machine software, control software, data analysis software, data acquisition software, lymphocyte, multicolor | Commercial product | http://www.beckman.com/coulter-flow-cytometry/instruments/flow-cytometers/navios | SCR_014421 | Navios Tetra Software | 2026-08-13 09:29:10 | 3 | |||||||||
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BD Accuri C6 Plus Resource Report Resource Website 50+ mentions |
BD Accuri C6 Plus (RRID:SCR_014422) | data analysis software, data processing software, software application, data acquisition software, software resource | Software used for collecting and analyzing flow cytometry data. Files can be exported in FCS 3.1 format for import into other flow cytometry analysis programs such as FCS Express™ software and FlowJo™ software. | data analysis software, data acquisition software, flow cytometry, flow cytometry analysis program | Commercial product | SCR_014422 | 2026-08-13 09:29:01 | 56 | |||||||||||
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Restoring Insulin Secretion Consortium (RISE) Resource Report Resource Website |
Restoring Insulin Secretion Consortium (RISE) (RRID:SCR_014383) | RISE | data or information resource, organization portal, database, consortium, portal | Consortium which includes 3 studies, each assessing the hypothesis that aggressive glucose lowering will lead to recovery of beta-cell function that will be sustained after treatment in those with prediabetes and early type 2 diabetes. | prediabetes, type 2 diabetes, consortium, aggressive glucose lowering, beta cell function, Diabetes |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is listed by: Diabetes Research Centers is listed by: NIDDK Central Repository |
NIDDK | SCR_014383 | Restoring Insulin Secretion Consortium | 2026-08-13 09:29:00 | 0 | ||||||||
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International Geo Sample Number Resource Report Resource Website 1+ mentions |
International Geo Sample Number (RRID:SCR_014505) | IGSN | data or information resource, narrative resource, standard specification, international standard specification, identifier resolution, production service resource, service resource | A persistent unique identifier for samples and specimens collected from the natural environment. IGSNs are created by the user and are case sensitive. They should be concise, machine readable, and non-derivable to ensure originality. IGSNs were created and are organized by the IGSN e.V., whose goal is to implement and promote standard methods for locating, identifying, and citing physical samples with confidence by operating an international IGSN registration service with a distributed infrastructure for use by and benefit to its members. | identifier, natural environment, geology, unique, identifying system | Available to participating members, IGSNs must be tagged in manuscripts | http://igsn.github.io http://igsn.github.io/syntax | SCR_014505 | International GeoSample Number, International Geo Sample Number (IGSN) | 2026-08-13 09:29:11 | 2 | ||||||||
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MSstats Resource Report Resource Website 100+ mentions |
MSstats (RRID:SCR_014353) | data analysis software, data processing software, software resource, software application | A package for statistical relative quantification of proteins and peptides in global, targeted, and data-independent proteomics. It handles shotgun, label-free, and label-based Selected Reaction Monitoring, as well as SWATH/DIA (Data Independent Acquisition) experiments. MSStats provide functionality for data processing and visualization, model-based statistical analysis, and model-based sample size calculations. | data independent acquisition, statistical relative quantification, protein, peptide, data analysis software, data processing, data visualization, proteomics |
uses: R Project for Statistical Computing is used by: Skyline is listed by: Bioconductor |
National Science Foundation CAREER award 1054826 | DOI:10.1186/1471-2105-13-S16-S6 | Acknowledgement requested, Available for download | http://www.bioconductor.org/packages/release/bioc/html/MSstats.html | SCR_014353 | MSStats | 2026-08-13 09:29:02 | 239 | ||||||
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CyberUnits Resource Report Resource Website 1+ mentions |
CyberUnits (RRID:SCR_014358) | simulation software, software application, software toolkit, software library, software resource | A cross-platform class library for development of high-performance life science computer simulations. It supports modelling for biomedical cybernetics and systems biology with Object Pascal. It contains a set of Pascal units for rapid programming of high-performance computer simulations called the Brick collection. | simulation software, modeling, pascal, software library |
uses: Free Pascal Compiler is used by: SimulaBeta is used by: SimulAdren is related to: Lazarus IDE |
DOI:10.13140/RG.2.1.4227.4963 | May be used with open source software and in commercial applications, Source code is available, Bricks collection is available for download | SCR_014358 | 2026-08-13 09:29:10 | 1 | |||||||||
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VDJ Server Resource Report Resource Website 10+ mentions |
VDJ Server (RRID:SCR_014356) | web application, data analysis software, data processing software, software application, software resource, collaboration tool | A web application immune repertoire management, analysis, and archiving. Users can collaborate and share data either privately or publicly. Users can perform a variety of tasks, such as create and share projects with other users, conduct pre-processing tasks on single end reads, run IgBlast, and obtain basic repertoire characterization results for B cell receptor and T cell receptor repertoires. | omics data, web application, scalable resource, immune repertoire |
has parent organization: University of Texas Southwestern Medical Center; Texas; USA has parent organization: J. Craig Venter Institute has parent organization: Yale University; Connecticut; USA |
NIAID 1R01A1097403 | Free, Open source analysis software is available for local use | http://wiki.vdjserver.org/vdjserver/index.php/VDJServer_Wiki | SCR_014356 | VDJServer | 2026-08-13 09:29:00 | 18 | |||||||
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Brain Entropy Mapping Toolbox Resource Report Resource Website 10+ mentions |
Brain Entropy Mapping Toolbox (RRID:SCR_014470) | BENtbx | data processing software, software application, software toolkit, software resource, image processing software | A toolkit for mapping brain entropy using fMRI. It uses several functions from ASLtbx. At its core, the toolkit is a collection of batch scripts that implement a pipeline for processing fMRI data in order to get Sample entropy for each voxel. | brain, entropy, fmri, mapping, software toolkit, image processing software | PMID:24657999 | Acknowledgement required, Register to download application and sample data | SCR_014470 | Brain Entropy Mapping Toolbox: BENtbx | 2026-08-13 09:29:02 | 12 | ||||||||
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Rexplore Resource Report Resource Website |
Rexplore (RRID:SCR_014364) | web application, software resource, text-mining software, software application | An application which provides an environment to explore and organize scholarly data. Rexplore leverages solutions in large-scale data mining, semantic technologies and visual analytics, which allows users to detect and follow research trends, identify and map relationships between authors, perform expert searches, and analyze research performance. | semantic publishing, analytics, semantic web, machine learning, data mining | has parent organization: Open University; Milton Keynes; United Kingdom | Not publicly available, Contact Enrico Motta | SCR_014364 | 2026-08-13 09:29:02 | 0 | ||||||||||
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CopyCaller Resource Report Resource Website 100+ mentions |
CopyCaller (RRID:SCR_014486) | data analysis software, data processing software, software resource, software application | A software for analyzing real-time PCR data and quantifying DNA targets. It can perform copy number analysis, report confidence in copy number, display data in table and graphic format, change analysis parameters, and view data analysis information for multiple experiments at once. | data analysis, real-time pcr data analysis, real-time pcr, pcr, dna target | SCR_014486 | 2026-08-13 09:29:03 | 344 | ||||||||||||
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Minitab Resource Report Resource Website 5000+ mentions |
Minitab (RRID:SCR_014483) | data analysis software, data processing software, software resource, software application | A statistical software package that allows the user to import data, create graphs, and perform statistical analysis. It can perform basic statistical tests like descriptive statistics, hypothesis tests, confidence intervals, and normality tests as well as regression and ANOVA and quality assessment. | data analysis, statistical analysis, hypothesis, confidence, descriptive | is listed by: SoftCite | SCR_014483 | 2026-08-13 09:29:03 | 6109 | |||||||||||
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Optseq Resource Report Resource Website 100+ mentions |
Optseq (RRID:SCR_014363) | data processing software, software application, standalone software, data acquisition software, software resource | Software tool for automatically scheduling events for rapid-presentation event-related (RPER) fMRI experiments (the schedule is the order and timing of events). Events in RPER are presented closely enough in time that their hemodynamic responses will overlap. This requires that the onset times of the events be jittered in order to remove the overlap from the estimate of the hemodynamic response. RPER is highly resistant to habituation, expectation, and set because the subject does not know when the next stimulus will appear or which stimulus type it will be. | fmri, scheduling event, event, rper, hemodynamic response, stimulus, stochastic design | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Available for download | SCR_005976, nlx_151349 | http://www.nitrc.org/projects/optseq | SCR_014363 | Optseq2, Optseq - fMRI Event Scheduler | 2026-08-13 09:29:00 | 341 |
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