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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Arabidopsis Hormone Database Resource Report Resource Website 10+ mentions |
Arabidopsis Hormone Database (RRID:SCR_001792) | AHD, AHD2.0 | controlled vocabulary, data or information resource, data repository, database, ontology, service resource, storage service resource | Database providing a systematic and comprehensive view of morphological phenotypes regulated by plant hormones, as well as regulatory genes participating in numerous plant hormone responses. By integrating the data from mutant studies, transgenic analysis and gene ontology annotation, genes related to the stimulus of eight plant hormones were identified, including abscisic acid, auxin, brassinosteroid, cytokinin, ethylene, gibberellin, jasmonic acid and salicylic acid. Another pronounced characteristics of this database is that a phenotype ontology was developed to precisely describe all kinds of morphological processes regulated by plant hormones with standardized vocabularies. To increase the coverage of phytohormone related genes, the database has been updated from AHD to AHD2.0 adding and integrating several pronounced features: (1) added 291 newly published Arabidopsis hormone related genes as well as corrected information (e.g. the arguable ABA receptors) based on the recent 2-year literature; (2) integrated orthologues of sequenced plants in OrthoMCLDB into each gene in the database; (3) integrated predicted miRNA splicing site in each gene in the database; (4) provided genetic relationship of these phytohormone related genes mining from literature, which represents the first effort to construct a relatively comprehensive and complex network of hormone related genes as shown in the home page of our database; (5) In convenience to in-time bioinformatics analysis, they also provided links to a powerful online analysis platform Weblab that they have recently developed, which will allow users to readily perform various sequence analysis with these phytohormone related genes retrieved from AHD2.0; (6) provided links to other protein databases as well as more expression profiling information that would facilitate users for a more systematic analysis related to phytohormone research. Please help to improve the database with your contributions. | arabidopsis thaliana, hormone, hormone function, hormone gene, phytohormone, abscisic acid, auxin, brassinosteroid, cytokinin, ethylene, gibberellin, jasmonic acid, salicylic acid, microarray, phenotype, gene, mirna prediction, expression, mutant, blast, orthologue, mirna splicing site, root, cotyledon, leaf, hypocotyl, stem, flower, silique, seed, embryo, stress, morphology, plant, hormone, regulatory gene, mutant, transgenic, annotation, data analysis service |
is related to: Gene Ontology has parent organization: Peking University; Beijing; China |
National Natural Science Foundation of China 30625003; National Natural Science Foundation of China 30730011; Ministry of Science and Technology of China 2009CB119101; Ministry of Education of China ED20060047 |
PMID:21045062 PMID:19015126 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02559 | SCR_001792 | Arabidopsis Hormone Database 2.0 | 2026-09-19 12:49:47 | 28 | |||||
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Arabidopsis thaliana Protein Interactome Database Resource Report Resource Website 1+ mentions |
Arabidopsis thaliana Protein Interactome Database (RRID:SCR_001896) | AtPID | data or information resource, data repository, database, service resource, storage service resource | Centralized platform to depict and integrate the information pertaining to protein-protein interaction networks, domain architecture, ortholog information and GO annotation in the Arabidopsis thaliana proteome. The Protein-protein interaction pairs are predicted by integrating several methods with the Naive Baysian Classifier. All other related information curated is manually extracted from published literature and other resources from some expert biologists. You are welcomed to upload your PPI or subcellular localization information or report data errors. Arabidopsis proteins is annotated with information (e.g. functional annotation, subcellular localization, tissue-specific expression, phosphorylation information, SNP phenotype and mutant phenotype, etc.) and interaction qualifications (e.g. transcriptional regulation, complex assembly, functional collaboration, etc.) via further literature text mining and integration of other resources. Meanwhile, the related information is vividly displayed to users through a comprehensive and newly developed display and analytical tools. The system allows the construction of tissue-specific interaction networks with display of canonical pathways. | gene, gene expression, domain, annotation, ineractome, metabolic pathway, phylogenetic, protein, protein-protein interaction, signaling pathway, proteome, protein subcellular location, ortholog, gene regulation, pathway, phenotype |
is listed by: OMICtools is related to: Gene Ontology has parent organization: Northeast Forest University; Harbin; China |
National Basic Research Program of China 2010CB945400; National Basic Research Program of China 2007CB108800; National High Technology Research and Development Program of China 2006AA02Z313; National High Technology Research and Development Program of China 2006AA10Z129; National Natural Science Foundation of China 30870575; National Natural Science Foundation of China 30730078; Science and Technology Commission of Shanghai Municipality 06DZ22923 |
PMID:21036873 PMID:17962307 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01898, nif-0000-02585 | http://atpid.biosino.org/ | SCR_001896 | AtPID Database | 2026-09-19 12:49:51 | 8 | ||||
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PBmice Resource Report Resource Website 1+ mentions |
PBmice (RRID:SCR_006978) | PBmice | data or information resource, data repository, database, service resource, software resource, source code, storage service resource | Database for storing, retrieving, and displaying the information derived from piggyBac (PB) insertions (Insert) and their characterizations in the mouse genome with piggyBac transposon system. Quick Search and Advanced Search tools have been provided to find information in the PBmice database, the result is centered on Inserts and provides information related to the Inserts. A mapping database is linked to PBmice too. This mapping database allows row experiment data to be inputted in. All the mature data can be allowed publish to PBmice. PBmice Source Code is available with a License Agreement. | c57bl/6j, insertional mutation, mutagenesis, piggybac, transposon, insert, mutation | has parent organization: Fudan University; Shanghai; China | Program for New Century Excellent Talents in University ; Chinese Key Projects for Basic Research 2006CB806700; Chinese Key Projects for Basic Research 2005CB321905; Chinese Key Projects for Basic Research 2002CB512801; Hi-tech Research and Development Project 2007AA022012; National Natural Science Foundation of China 60473124; Shanghai Pujiang Program 05PJ14024 |
PMID:17932058 | nlx_97993 | http://www.scbit.org/PBmice/, http://www.idmshanghai.cn/PBmice/ | SCR_006978 | PiggyBac Mutagenesis Information CEnter, PBmice: PiggyBac Mutagenesis Information CEnter | 2026-09-19 12:51:22 | 1 | |||||
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Consortium for Reliability and Reproducibility Resource Report Resource Website 1+ mentions |
Consortium for Reliability and Reproducibility (RRID:SCR_003774) | CoRR | data or information resource, data set, portal | Consortium that has aggregated resting state fMRI (R-fMRI) and diffusion imaging data from laboratories around the world, creating an open science resource for the imaging community, that facilitates the assessment of test-retest reliability and reproducibility for functional and structural connectomics. Given that this was a retrospective data collection, they have focused on basic phenotypic measures that are relatively standard in the neuroimaging field, as well as fundamental for analyses and sample characterization. Their phenotypic key is organized to reflect three classifications of variables: 1) core (i.e., minimal variables required to characterize any dataset), 2) preferred (i.e., variables that were strongly suggested for inclusion due to their relative import and/or likelihood of being collected by most sites), and 3) optional (variables that are data-set specific or only shared by a few sites). CoRR includes 33 datasets consisting of: * 1629 Subjects * 3357 Anatomical Scans * 5093 Resting Functional Scans * 1302 Diffusion Scans * 300 CBF and ASL Scans | consortium, connectomics, reproducibility, resting state fmri, fmri, diffusion mri, neuroimaging, metadata standard, functional image, dti, anatomical image, functional, anatomical |
uses: Mind Research Network - COINS uses: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: 1000 Functional Connectomes Project |
NIDA ; National Natural Science Foundation of China ; Child Mind Institute ; Institute of Psychology ; Chinese Academy of Sciences ; Nathan S. Kline Institute for Psychiatric Research; New York; USA |
Registration required, (NITRC), Open unspecified license | nlx_158048 | SCR_003774 | Consortium for Reliability and Reproducibility (CoRR) | 2026-09-19 12:50:25 | 6 | ||||||
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International HapMap Project Resource Report Resource Website 5000+ mentions |
International HapMap Project (RRID:SCR_002846) | HapMap | data or information resource, database, experimental protocol, narrative resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. A multi-country collaboration among scientists and funding agencies to develop a public resource where genetic similarities and differences in human beings are identified and catalogued. Using this information, researchers will be able to find genes that affect health, disease, and individual responses to medications and environmental factors. All of the information generated by the Project will be released into the public domain. Their goal is to compare the genetic sequences of different individuals to identify chromosomal regions where genetic variants are shared. Public and private organizations in six countries are participating in the International HapMap Project. Data generated by the Project can be downloaded with minimal constraints. HapMap project related data, software, and documentation include: bulk data on genotypes, frequencies, LD data, phasing data, allocated SNPs, recombination rates and hotspots, SNP assays, Perlegen amplicons, raw data, inferred genotypes, and mitochondrial and chrY haplogroups; Generic Genome Browser software; protocols and information on assay design, genotyping and other protocols used in the project; and documentation of samples/individuals and the XML format used in the project. | genetic variant, disease, genetic sequence, genetic variation, single nucleotide polymorphism, genetic diversity, dna, sequence, catalog, genome, chromosome, bio.tools |
is used by: BioSample Database at EBI is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: SNAP - SNP Annotation and Proxy Search is related to: Haploview is related to: NHGRI Sample Repository for Human Genetic Research is related to: DistiLD - Diseases and Traits in LD is related to: SNP at Ethnos is related to: GBrowse is related to: Broad Institute Genomics Platform has parent organization: NCBI |
Chinese Academy of Sciences ; Chinese Ministry of Science and Technology ; Delores Dore Eccles Foundation ; Genome Canada ; Genome Quebec ; Hong Kong Innovation and Technology Commission ; Japanese Ministry of Education Culture Sports Science and Technology MEXT ; National Natural Science Foundation of China ; SNP Consortium ; University Grants Committee of Hong Kong ; Wellcome Trust ; W. M. Keck Foundation ; NIH |
PMID:14685227 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02940, biotools:int_hapmap_project, r3d100011835, OMICS_00273 | http://www.hapmap.org/, https://bio.tools/int_hapmap_project, https://doi.org/10.17616/R3H06Q | http://snp.cshl.org | SCR_002846 | HapMap Project | 2026-09-19 12:50:06 | 6854 | |||
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Human Potential Tumor Associated Antigen database Resource Report Resource Website 1+ mentions |
Human Potential Tumor Associated Antigen database (RRID:SCR_002938) | data or information resource, database | To accelerate the process of tumor antigen discovery, we generated a publicly available Human Potential Tumor Associated Antigen database (HPtaa) with pTAAs identified by insilico computing. 3518 potential targets have been included in the database, which is freely available to academic users. It successfully screened out 41 of 82 known Cancer-Testis antigens, 6 of 18 differentiation antigen, 2 of 2 oncofetal antigen, and 7 of 12 FDA approved cancer markers that have Gene ID, therefore will provide a good platform for identification of cancer target genes. This database utilizes expression data from various expression platforms, including carefully chosen publicly available microarray expression data, GEO SAGE data, Unigene expression data. In addition, other relevant databases required for TAA discovery such as CGAP, CCDS, gene ontology database etc, were also incorporated. In order to integrate different expression platforms together, various strategies and algorithms have been developed. Known tumor antigens are gathered from literature and serve as training sets. A total tumor specificity penalty was computed from positive clue penalty for differential expression in human cancers, the corresponding differential ratio, and normal tissue restriction penalty for each gene. We hope this database will help with the process of cancer immunome identification, thus help with improving the diagnosis and treatment of human carcinomas. | cancer, tumor, tumor-associated antigen | has parent organization: Chinese Academy of Sciences; Beijing; China | National 863 program in China 2001AA215411; National Natural Science Foundation of China 30531160045; National Natural Science Foundation of China 30570393; Ludwig Institute for Cancer Research KSP 003 |
PMID:16381942 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02987 | http://www.hptaa.org | SCR_002938 | HPtaa Database | 2026-09-19 12:56:37 | 1 | |||||
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Database of Arabidopsis Transcription Factors Resource Report Resource Website 10+ mentions |
Database of Arabidopsis Transcription Factors (RRID:SCR_007101) | DATF | data or information resource, database | Database that collects all arabidopsis transcription factors (totally 1922 Loci; 2290 Gene Models) and classifies them into 64 families. It uses not only locus (gene), but also gene model (transcript, protein) and the detail information is for each gene model not for locus. It adds multiple alignment of the DNA-binding domain of each family, Neighbor-Joining phylogenetic tree of each family, the GO annotation, homolog with the Database of Rice Transcription Factors (DRTF). It also keeps old information items such as the unique cloned and sequenced information of about 1200 transcription factors, protein domains, 3D structure information with BLAST hits against PDB, predicted Nuclear Location Signals, UniGene information, as well as links to literature reference. | gene, alignment, arabidopsis, binding, clone, dna, domain, locus, phylogenetic tree, transcription, chromosome, transcription factor, blast, family, bio.tools, FASEB list |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Peking University; Beijing; China |
State Key Laboratory of Protein and Plant Gene Research ; National Natural Science Foundation of China 31470330; China 863 Programs 2006AA02Z334; China Postdoctoral Science Foundation Grant 2014M560017 |
PMID:15731212 | Free | nif-0000-21112, OMICS_00551, biotools:datf | https://bio.tools/datf | SCR_007101 | 2026-09-19 12:57:01 | 37 | |||||
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lnc2cancer Resource Report Resource Website 10+ mentions |
lnc2cancer (RRID:SCR_023781) | data or information resource, database | Manually curated database of experimentally supported lncRNAs associated with various human cancers. Cancer long non coding RNA database. Lnc2Cancer 3.0 is updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. | Manually curated database, experimentally supported lncRNAs, human cancer, cancer long non coding RNA, lncRNA/circRNA cancer, | Heilongjiang Provincial Natural Science Foundation ; Heilongjiang Touyan Innovation Team Program ; National High Technology Research and Development Program of China ; National Key R and D Program of China ; National Natural Science Foundation of China ; Postdoctoral Foundation of Heilongjiang Province ; Postdoctoral Science Foundation of China |
PMID:26481356 PMID:33219685 |
Free, Freely available | SCR_023781 | lnc2Cancer 3.0 | 2026-09-19 12:57:40 | 26 | ||||||||
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HLAsupE Resource Report Resource Website 1+ mentions |
HLAsupE (RRID:SCR_016277) | data or information resource, database | Database of HLA supertype-specific epitopes. It describes major histocompatibility complex (MHC) molecules that bind short peptides derived from endogenous or exogenous antigens and present them onto the surface of antigen-presenting cells (APCs) for T-cell receptor (TCR) recognition. | hla, supertype, epitope, t cell, immunology, immune, mhc, antigen, histocompatibility | 863 Project 2012AA02A407; National Natural Science Foundation of China 31270788; National Natural Science Foundation of China 31470899; National Natural Science Foundation of China 91442203; National Science and Technology Major Project 2012ZX09103301014 |
PMID:27307005 | Freely available, Tutorial available | SCR_016277 | integrated database of HLA supertype specific epitopes | 2026-09-19 12:57:35 | 1 | ||||||||
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Resting State Hemodynamic Response Function Retrieval and Deconvolution Resource Report Resource Website 1+ mentions |
Resting State Hemodynamic Response Function Retrieval and Deconvolution (RRID:SCR_023663) | rsHRF | software resource, software toolkit | Software toolbox for resting state HRF estimation and deconvolution analysis. Matlab and Python toolbox that implements HRF estimation and deconvolution from resting state BOLD signal. Used to retrieve optimal lag between events and HRF onset, as well as HRF shape. Once that HRF has been retrieved for each voxel/vertex, it can be deconvolved from time series or one can map shape parameters everywhere in brain and use it as pathophysiological indicator. Input can be 2D GIfTI, 3D or 4D NIfTI images, but also on time series matrices/vectors. Output are three HRF shape parameters for each voxel/vertex, plus deconvolved time series, and number of retrieved pseudo events. All can be written back to GIfTI or NIfTI images. | hemodynamic response function, HRF estimation and deconvolution, resting state BOLD signal, GIfTI images, NIfTI images, brain | European Union Horizon 2020 Framework Programme ; Fund for Scientific Research-Flanders ; National Natural Science Foundation of China |
PMID:34560269 | Free, Available for download, Freely available | https://github.com/compneuro-da/rsHRF | SCR_023663 | 2026-09-19 12:58:26 | 4 | |||||||
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Beijing: Eyes Open Eyes Closed Study Resource Report Resource Website |
Beijing: Eyes Open Eyes Closed Study (RRID:SCR_001507) | Beijing EOEC | data or information resource, data set | Data set of 48 healthy controls from a community (student) sample from Beijing Normal University in China with 3 resting state fMRI scans each. During the first scan participants were instructed to rest with their eyes closed. The second and third resting state scan were randomized between resting with eyes open versus eyes closed. In addition this dataset contains a 64-direction DTI scan for every participant. The following data are released for every participant: * 6-minute resting state fMRI scan (R-fMRI) * MPRAGE anatomical scan, defaced to protect patient confidentiality * 64-direction diffusion tensor imaging scan (2mm isotropic) * Demographic information and information on the counterbalancing of eyes open versus eyes closed. | early adult human, resting state, fmri, diffusion tensor imaging, resting state fmri, eyes open, eyes closed, neuroimaging, mprage, image collection, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Beijing Normal University; Beijing; China has parent organization: 1000 Functional Connectomes Project |
Healthy | National Natural Science Foundation of China 30770594; National High Technology Program of China (863) 2008AA02Z405 |
Creative Commons Attribution-NonCommercial License | nlx_152810 | SCR_001507 | Beijing Eyes Open Eyes Closed Study, Beijing Normal University State Key Laboratory of Cognitive Neuroscience and Learning Eyes Open Eyes Closed Sample, Eyes Open Eyes Closed Sample, BNU Eyes Open Eyes Closed Sample | 2026-09-19 12:58:33 | 0 | |||||
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CLEAR Resource Report Resource Website 10+ mentions |
CLEAR (RRID:SCR_021663) | data analysis software, data processing software, software application, software resource | Software tool as computational pipeline for circular and linear RNA expression analysis from ribosomal-RNA depleted RNA-seq. CIRCexplorer3-CLEAR is CLEAR pipeline for direct comparison of circular and linear RNA expression. | Howard Hughes Medical Institute International Program ; National Natural Science Foundation of China ; Strategic Priority Research Program of Chinese Academy of Sciences |
PMID:31904419 DOI:10.1101/668657 |
Free, Available for download, Freely available | SCR_021663 | CLEAR/circExplorer3, Circular and Linear RNA Expression Analysis from Ribosomal-RNA depleted (Ribo–) RNA-seq, CIRCexplorer3-CLEAR | 2026-09-19 12:54:56 | 15 | |||||||||
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Group Information Guided ICA Resource Report Resource Website |
Group Information Guided ICA (RRID:SCR_009491) | GIG-ICA | software resource, software toolkit | Software toolbox for group-information guided Independent Component Analysis (ICA). In GIG-ICA, group information captured by standard Independent Component Analysis (ICA) on the group level is used as guidance to compute individual subject specific Independent Components (ICs) using a multi-objective optimization strategy. For computing subject specific ICs, GIG-ICA is applicable to subjects that are involved or not involved in the computation of the group information. Besides the group ICs, group information captured from other imaging modalities and meta analysis could be used as the guidance in GIG-ICA too. | computational neuroscience, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Chinese Academy of Sciences; Beijing; China |
Hundred Talent Program of the Chinese Academy of Sciences ; National Basic Research Program of China 973 Program ; National Natural Science Foundation of China 91132707; National Natural Science Foundation of China 30970770 |
PMID:23194820 | Available for download | nlx_155639 | SCR_009491 | 2026-09-19 12:58:07 | 0 | ||||||
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iNPS Resource Report Resource Website 10+ mentions |
iNPS (RRID:SCR_015750) | algorithm resource, software resource | Software for nucleosome detection that builds on the NPS software. Its application to T-cell activation data demonstrates a greater ability to facilitate detection of nucleosome repositioning, uncovering additional biological features underlying the activation process., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | nucleosome, detection, nps, sequencing data, nucleosome positioning | is related to: NPS | Chinese Academy of Sciences KSCX2-EW-J-15; Chinese Academy of Sciences KSCX2-EW-R-02; Chinese Academy of Sciences YZ201243; Chinese Ministry of Science and Technology 2011CB504206; Fundamental Research Funds for the Central Universities 2014JBZ005; National Natural Science Foundation of China 31210103916; National Natural Science Foundation of China 91019019; Shanghai Academic Leader Project 11XD1405700; Stem Cell Leading Project XDA01010303 |
PMID:25233085 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015750 | iNPS: An improved algorithm for accurate nucleosome positioning from sequencing data | 2026-09-19 12:58:13 | 25 | |||||||
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shinyCircoss Resource Report Resource Website 1+ mentions |
shinyCircoss (RRID:SCR_022367) | software application, software resource | Software R/Shiny application for interactive creation of Circos plot. Used for creation of Circos plot interactively. | Circos plot, interactive creation |
uses: Shiny uses: R Project for Statistical Computing is related to: RCircos is related to: RStudio is related to: CRAN |
Fundamental Research Funds for the Central Universities ; National Key Research and Development Program of China ; National Natural Science Foundation of China ; National Program for Support of Top-notch Young Professionals |
PMID:29186362 | Free, Available for download, Freely available | https://github.com/YaoLab-Bioinfo/shinyCircos | SCR_022367 | 2026-09-19 12:58:21 | 3 | |||||||
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IPEV Resource Report Resource Website 1+ mentions |
IPEV (RRID:SCR_023702) | data analysis software, data processing software, software application, software resource | Software tool to identify of Prokaryotic and Eukaryotic virus derived sequences in virome using deep learning. Used to calculate set of scores that reflect probability that input sequence fragments are prokaryotic and eukaryotic viral sequences. | Prokaryotic and Eukaryotic virus derived sequences, identify sequences, virome, eukaryotic viral sequences, prokaryotic viral sequences, | National Key Research and Development Program of China ; National Natural Science Foundation of China |
DOI:10.1101/2023.05.28.541705 | Free, Available for download, Freely available | SCR_023702 | Identification of Prokaryotic and Eukaryotic Virus | 2026-09-19 12:55:37 | 1 | ||||||||
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TAM Resource Report Resource Website 10+ mentions |
TAM (RRID:SCR_023800) | data access protocol, software resource, web service | Web server for miRNA set enrichment analysis. TAM 2.0 is updated version of this web server. Allows to test functional and disease annotations of miRNAs by overrepresentation analysis and to compare input de-regulated miRNAs with those de-regulated in other disease conditions via correlation analysis. | miRNA set enrichment analysis, functional and disease annotations testing, miRNAs, overrepresentation analysis, | Doctoral Fund of Ministry of Education of China ; Fundamental Research Funds for Central Universities of China ; National Natural Science Foundation of China ; Natural Science Foundation of Hebei Province |
PMID:29878154 PMID:20696049 |
Free, Freely available | SCR_023800 | TAM 2.0 | 2026-09-19 12:55:39 | 11 | ||||||||
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miRBaseConverter Resource Report Resource Website 1+ mentions |
miRBaseConverter (RRID:SCR_023873) | data analysis software, data processing software, software application, software resource | Software R package for converting and retrieving information of miRNAs in different miRBase versions. Used for converting and retrieving miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. Can process huge number of miRNAs in short time without other depends. | converting and retrieving miRNAs information, miRNAs information, different miRBase versions, miRNA Name, miRNA Accession, miRNA Sequence, miRNA Version, miRNA History, miRNA Family, miRNA | Applied Basic Research Foundation of Science and Technology of Yunnan Province ; Australian Research Council Discovery Project ; Chinese Academy of Sciences ; National Health and Medical Research council ; National Natural Science Foundation of China ; Presidential Foundation of Hefei Institutes of Physical Science ; Shanghai Key Laboratory of Intelligent Information Processing China |
PMID:30598108 | Free, Available for download, Freely available | https://github.com/taoshengxu/miRBaseConverter | SCR_023873 | 2026-09-19 12:55:39 | 3 | ||||||||
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RNALocate Resource Report Resource Website 10+ mentions |
RNALocate (RRID:SCR_024418) | data access protocol, software resource, web service | Web tool for RNA subcellular localizations analysis. RNALocate v2.0 is updated resource for RNA subcellular localization with increased coverage and annotation. | RNA subcellular localizations analysis, | is listed by: SoftCite | Scientific Research Fund of Heilongjiang Provincial Education Department ; National Key Research and Development Project of China ; National Natural Science Foundation of China ; Paul K. and Diane Shumaker Endowment Fund at University of Missouri ; Guangdong Basic and Applied Basic Research Foundation |
PMID:27543076 PMID:34551440 |
Free, Freely available | http://www.rna-society.org/rnalocate/, http://www.rnalocate.org/ | SCR_024418 | RNALOCATE, RNALocate v2.0 | 2026-09-19 12:55:43 | 24 | ||||||
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HPEPDOCK Server Resource Report Resource Website 50+ mentions |
HPEPDOCK Server (RRID:SCR_018561) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server for blind peptide protein docking based on hierarchical algorithm. Blind peptide-protein docking by fast modeling of peptide conformations and global sampling of binding orientations. | Blind peptide protein docking, peptide conformation modeling, global sampling, blind orientation, protein, modeling, docking, bio.tools |
is listed by: bio.tools is listed by: Debian |
Huazhong University of Science and Technology ; National Key Research and Development Program of China ; National Natural Science Foundation of China |
PMID:29746661 | Free, Freely available | biotools:hpepdock | https://bio.tools/hpepdock | SCR_018561 | 2026-09-19 12:53:53 | 73 |
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