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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
AdaptiveCrawler
 
Resource Report
Resource Website
AdaptiveCrawler (RRID:SCR_000573) AdaptiveCrawler software resource, web application THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 9,2022. A web crawler that can intelligently acquire social media content on the Internet to meet the specific online data source acquisition needs of cancer researchers. web crawler, acquire social media content on Internet, cancer research, is listed by: OMICtools
has parent organization: Oak Ridge National Laboratory
Cancer, Breast cancer, Lung cancer PMID:24078710 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01170 SCR_000573 Adaptive Crawler, Smart Web Crawler 2026-08-03 09:31:05 0
Common Terminology Criteria for Adverse Events
 
Resource Report
Resource Website
10+ mentions
Common Terminology Criteria for Adverse Events (RRID:SCR_010296) CTCAE controlled vocabulary, data or information resource, ontology A coding system for reporting adverse events that occur in the course of cancer therapy. It was derived from the Common Toxicity Criteria (CTC) v2.0 and is maintained by the Cancer Therapy Evaluation Program (CTEP) at the National Cancer Institution (NCI). owl is listed by: BioPortal
has parent organization: National Cancer Institute
Cancer nlx_157370 SCR_010296 2026-08-03 09:34:48 10
Upper-Level Cancer Ontology
 
Resource Report
Resource Website
Upper-Level Cancer Ontology (RRID:SCR_010443) CANONT controlled vocabulary, data or information resource, ontology Upper-level ontology for cancer. obo is listed by: BioPortal Cancer nlx_157620 SCR_010443 2026-08-03 09:34:50 0
FISH Oracle
 
Resource Report
Resource Website
FISH Oracle (RRID:SCR_010927) FISH Oracle data or information resource, software resource, database A web-based software tool for the integrative analysis of cancer genomics data. It stores different kinds of downstream processed data from multiple samples in a single database. A powerful search interface allows to dynamically filter the data to be displayed with respect to different criteria. The combination of AJAX technology and a fast visualization engine facilitates a highly dynamic visualization for large amounts of data. FISH Oracle 2 is able to simultaneously display different data sets, thus simplifying their comparison. Filter and display options can be changed on the fly. High quality image export enables the life scientist to easily communicate the results, e.g. in presentations or publications. A comprehensive data administration assures to keep track of the data stored in the database. array cgh, snp, genomics, visualization is listed by: OMICtools
has parent organization: University of Hamburg; Hamburg; Germany
Cancer PMID:21884636 OMICS_00721 SCR_010927 2026-08-03 09:34:36 0
L2L Microarray Analysis Tool
 
Resource Report
Resource Website
1+ mentions
L2L Microarray Analysis Tool (RRID:SCR_013440) L2L data repository, production service resource, data analysis service, service resource, software application, data processing software, database, data analysis software, storage service resource, analysis service resource, data or information resource, software resource THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone.. Documented on August 26, 2019.

Database of published microarray gene expression data, and a software tool for comparing that published data to a user''''s own microarray results. It is very simple to use - all you need is a web browser and a list of the probes that went up or down in your experiment. If you find L2L useful please consider contributing your published data to the L2L Microarray Database in the form of list files. L2L finds true biological patterns in gene expression data by systematically comparing your own list of genes to lists of genes that have been experimentally determined to be co-expressed in response to a particular stimulus - in other words, published lists of microarray results. The patterns it finds can point to the underlying disease process or affected molecular function that actually generated the observed changed in gene expression. Its insights are far more systematic than critical gene analyses, and more biologically relevant than pure Gene Ontology-based analyses. The publications included in the L2L MDB initially reflected topics thought to be related to Cockayne syndrome: aging, cancer, and DNA damage. Since then, the scope of the publications included has expanded considerably, to include chromatin structure, immune and inflammatory mediators, the hypoxic response, adipogenesis, growth factors, hormones, cell cycle regulators, and others. Despite the parochial origins of the database, the wide range of topics covered will make L2L of general interest to any investigator using microarrays to study human biology. In addition to the L2L Microarray Database, L2L contains three sets of lists derived from Gene Ontology categories: Biological Process, Cellular Component, and Molecular Function. As with the L2L MDB, each GO sub-category is represented by a text file that contains annotation information and a list of the HUGO symbols of the genes assigned to that sub-category or any of its descendants. You don''''t need to download L2L to use it to analyze your microarray data. There is an easy-to-use web-based analysis tool, and you have the option of downloading your results so you can view them at any time on your own computer, using any web browser. However, if you prefer, the entire L2L project, and all of its components, can be downloaded from the download page. Platform: Online tool, Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible
microarray, gene expression, adipogenesis, biological, biological process, cancer, cell cycle regulator, cellular component, chromatin, cockayne syndrome, dna damage, growth factor, hormone, human biology, hypoxic response, immune mediator, inflammatory mediator, molecular function, molecular neuroanatomy resource, adipocyte, development, hypoxia, immune, inflammation, metabolism, mitogen, neuro, rna, vascular, transcription, tissue, splicing, mouse, human, rat, source code, statistical analysis, gene, chromatin structure is listed by: Gene Ontology Tools
is related to: Gene Ontology
has parent organization: University of Washington; Seattle; USA
Cockayne syndrome, DNA damage, Other, Aging, Cancer Cora May Poncin Foundation ;
NIGMS GM41624
PMID:16168088 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10463 http://depts.washington.edu/l2l/about.html SCR_013440 L2L Microarray Database, L2L Microarray Analysis Tool: A simple tool for discovering the hidden biological significance in microarray expression data, L2L MDB 2026-08-03 09:35:15 1
GeneSigDB
 
Resource Report
Resource Website
10+ mentions
GeneSigDB (RRID:SCR_013275) GeneSigDB data repository, production service resource, data analysis service, web service, service resource, database, storage service resource, analysis service resource, data access protocol, data or information resource, software resource Database of traceable, standardized, annotated gene signatures which have been manually curated from publications that are indexed in PubMed. The Advanced Gene Search will perform a One-tailed Fisher Exact Test (which is equivalent to Hypergeometric Distribution) to test if your gene list is over-represented in any gene signature in GeneSigDB. Gene expression studies typically result in a list of genes (gene signature) which reflect the many biological pathways that are concurrently active. We have created a Gene Signature Data Base (GeneSigDB) of published gene expression signatures or gene sets which we have manually extracted from published literature. GeneSigDB was creating following a thorough search of PubMed using defined set of cancer gene signature search terms. We would be delighted to accept or update your gene signature. Please fill out the form as best you can. We will contact you when we get it and will be happy to work with you to ensure we accurately report your signature. GeneSigDB is capable of providing its functionality through a Java RESTful web service. gene, gene signature, curated gene signature, gene expression, gene expression signature, bio.tools is listed by: Debian
is listed by: bio.tools
has parent organization: Dana-Farber Cancer Institute
has parent organization: Computational Biology and Functional Genomics Laboratory at Harvard
Cancer Genome Research Institute ;
Dana-Farber Cancer Institute ;
Women's Cancers Program ;
Claudia Adams Barr Foundation ;
NLM 1R01 LM010129;
NCI 1U19 CA148065;
NHGRI 1P50 HG004233
PMID:22110038 biotools:genesigdb, nlx_149342 https://bio.tools/genesigdb SCR_013275 Gene Signature Data Base, GeneSigDB - Curated Gene Signatures Database 2026-08-03 09:35:21 24
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource
 
Resource Report
Resource Website
Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource (RRID:SCR_015324) production service resource, service resource, access service resource, analysis service resource, data or information resource, core facility THIS RESOURCE IS NO LONGER IN SERVICE.Documented on July 27,2022. Core provides bioinformatics specialists available to assist researchers with processing, exploring, and understanding genomics data. hematology, bioinformatics, explore, understand, genomic, data, cancer is listed by: NIDDK Information Network (dkNET)
has parent organization: Fred Hutchinson Cancer Center
Cancer NIDDK P30 DK056465 THIS RESOURCE IS NO LONGER IN SERVICE SCR_015907 SCR_015324 Hutch, Bioinformatic Resource, Fred, Co-operative Center for Excellence in Hematology, Cancer Center 2026-08-03 09:36:08 0
Cancer Genomics Consortium
 
Resource Report
Resource Website
1+ mentions
Cancer Genomics Consortium (RRID:SCR_002384) CGC community building portal, organization portal, data or information resource, portal Consortium promoting communication and collaboration among cancer cytogenomics laboratories, who are interested in applying microarray technologies to cancer diagnosis and cancer research. Their oals are to (1) establish platform-neutral and cancer specific microarray designs for diagnostic purposes, (2) share cancer microarray data between participating institutions for education purposes, (3) create a public cancer array database, and (4) carry out multicenter cancer genome translational research. Collaboration amongst the different laboratories and researchers will not only provide validation for the microarray design(s) but ultimately provide more comprehensive molecular information and more accurate interpretation to better serve cancer patients and further cancer research. The CGC was officially incorporated in June 2010 as a not-for-profit organization. cytogenetics, molecular genetics, molecular pathology, microarray technology, cancer diagnosis, cancer research, microarry, cytogenomics, cancer cytogenomics, cancer genetics, genetics is listed by: OMICtools Cancer Membership fee, Account required OMICS_01776 SCR_002384 CCMC, Cancer Cytogenomics Microarray Consortium 2026-08-03 09:31:48 5
Hardin MD
 
Resource Report
Resource Website
Hardin MD (RRID:SCR_002364) image collection, data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 2, 2025. A medical database with lists, or directories, of information in health and medicine and images of medical conditions. Users may search Hardin MD, browse through the Medical picture gallery, and sort search results by disease or alphabetical letter. disease, health, medicine, database, directory, gallery, image collection has parent organization: University of Iowa; Iowa; USA AIDS, Autoimmune disease, Childrens disease, Herpes, Infectious disease, Skin disease, Sexually transmitted disease, Cancer, Heart disease THIS RESOURCE IS NO LONGER IN SERVICE. nif-0000-21186, r3d100011208 https://doi.org/10.17616/R3G62Z http://www.lib.uiowa.edu/hardin/md/ SCR_002364 Hardin Meta Directory 2026-08-03 09:31:39 0
Cancer Genomics Hub
 
Resource Report
Resource Website
100+ mentions
Cancer Genomics Hub (RRID:SCR_002657) CGHub data repository, data or information resource, database, storage service resource, service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 17, 2022. A secure repository for storing, cataloging, and accessing cancer genome sequences, alignments, and mutation information from the Cancer Genome Atlas (TCGA) consortium and related projects. CGHub gives scientific researchers the statistical power of large cancer genome datasets to attack the molecular complexity of cancer. genome, genome sequence, alignment, mutation has parent organization: University of California at Santa Cruz; California; USA Cancer PMID:25267794 THIS RESOURCE IS NO LONGER IN SERVICE. r3d100011174, nlx_156095 https://doi.org/10.17616/R3F919 SCR_002657 2026-08-03 09:32:04 176
Cancer Genome Anatomy Project
 
Resource Report
Resource Website
100+ mentions
Cancer Genome Anatomy Project (RRID:SCR_003072) CGAP topical portal, data or information resource, portal Project to determine the gene expression profiles of normal, precancer, and cancer cells, whose generated resources are available to the cancer community. Interconnected modules provide access to all CGAP data, bioinformatic analysis tools, and biological resources allowing the user to find in silico answers to biological questions in a fraction of the time it once took in the laboratory. * Genes * Tissues * Pathways * RNAi * Chromosomes * SAGE Genie * Tools gene, gene expression, normal cell, precancer cell, cancer cell, cell, genome, anatomy, gene expression profile, tissue, pathway, rnai, chromosome, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: National Cancer Institute
is parent organization of: CGAP GO Browser
Cancer, Normal, Precancer NCI Free, download Freely available biotools:cgap, nif-0000-30468 https://mitelmandatabase.isb-cgc.org/mb_search SCR_003072 Cancer Genome Anatomy Project (CGAP) 2026-08-03 09:32:09 107
EssSubgraph
 
Resource Report
Resource Website
1+ mentions
EssSubgraph (RRID:SCR_027354) EssSubgraph algorithm resource, software resource A model algorithm that integrates omics data and network data to predict essential genes. Biomarker, essential gene prediction, GNN Cancer National Science Foundation 2243562;
National Institutes of Health R35GM149531
DOI:10.1101/2025.07.21.665218 Integrating omics data and protein-protein interaction network data to predict essential genes. https://github.com/wenmm/EssSubgraph/tree/main SCR_027354 2026-08-02 09:09:40 1
Brain and Body Donation Program
 
Resource Report
Resource Website
100+ mentions
Brain and Body Donation Program (RRID:SCR_004822) BBDP tissue bank, biomaterial supply resource, material resource, brain bank THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. An autopsy-based, research-devoted brain bank, biobank and biospecimen bank that derives its human donors from the Arizona Study of Aging and Neurodegenerative Disease (AZSAND), a longitudinal clinicopathological study of the health and diseases of elderly volunteers living in Maricopa county and metropolitan Phoenix, Arizona. Their function is studied during life and their organs and tissue after death. To date, they have concentrated their studies on Alzheimer's disease, Parkinson's disease, heart disease and cancer. They share the banked tissue, biomaterials and biospecimens with qualified researchers worldwide. Registrants with suitable scientific credentials will be allowed access to a database of available tissue linked to relevant clinical information, and will allow tissue requests to be initiated., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. brain, late adult human, autopsy, mini mental state examination, neuropathological data, medical history, organ, tissue, brain, blood serum, cerebral spinal fluid, clinical, FASEB list is listed by: One Mind Biospecimen Bank Listing
has parent organization: Banner Sun Health Research Institute
Aging, Age-related disease, Alzheimer's disease, Parkinson's disease, Arthritis, Prostate cancer, Neurodegenerative disease, Cancer, Progressive supranuclear palsy, Hippocampal sclerosis, Vascular dementia, Dementia with Lewy bodies, Multiple system atrophy, Motor neuron disease, Frontotemporal lobar dementia, Corticobasal degeneration, Dementia, Cerebrovascular disease, Atherosclerosis, Renal hypertensive disease, Fatty liver, Type II diabetes Michael J. Fox Foundation for Parkinson's Research ;
Sun Health Foundation
PMID:25619230
PMID:33143239
THIS RESOURCE IS NO LONGER IN SERVICE nlx_80798 http://www.bannerhealth.com/Research/Research+Institutes/Banner+Sun+Health+Research+Institute/Research/Research+Programs/Brain+and+Body+Donation/Brain+and+Tissue+Bank.htm http://www.bannerhealth.com/Research/Research+Institutes/Banner+Sun+Health+Research+Institute/Ways+to+Give/Brain+and+Tissue/_Brain+and+Tissue.htm, http://www.bannerhealth.com/Research/Research+Institutes/Banner+Sun+Health+Research+Institute/Research/Research+Programs/Brain+and+Tissue/_Brain+and+Tissue.htm SCR_004822 Banner Sun Health Research Institute Brain and Tissue Bank, Banner Health Brain and Tissue Bank, Brain / Body Donation Program, Banner Brain and Tissue Bank, Banner Sun Health Research Institute Brain and Body Donation Program, Brain/Body Donation Program 2026-08-03 09:32:32 121
Ivy Glioblastoma Atlas Project
 
Resource Report
Resource Website
100+ mentions
Ivy Glioblastoma Atlas Project (RRID:SCR_005044) Ivy GAP image collection, data or information resource, atlas, database Platform for exploring the anatomic and genetic basis of glioblastoma at the cellular and molecular levels that includes two interactive databases linked together by de-identified tumor specimen numbers to facilitate comparisons across data modalities: * The open public image database, here, providing in situ hybridization data mapping gene expression across the anatomic structures inherent in glioblastoma, as well as associated histological data suitable for neuropathological examination * A companion database (Ivy GAP Clinical and Genomic Database) offering detailed clinical, genomic, and expression array data sets that are designed to elucidate the pathways involved in glioblastoma development and progression. This database requires registration for access. The hope is that researchers all over the world will mine these data and identify trends, correlations, and interesting leads for further studies with significant translational and clinical outcomes. The Ivy Glioblastoma Atlas Project is a collaborative partnership between the Ben and Catherine Ivy Foundation, the Allen Institute for Brain Science and the Ben and Catherine Ivy Center for Advanced Brain Tumor Treatment. glioblastoma, in situ hybridization, hematoxylin and eosin stain, brain, tumor, gene expression, anatomic structure, histology, clinical, genomic, expression array, gene, FASEB list has parent organization: Allen Institute for Brain Science Brain cancer, Cancer Ben and Catherine Ivy Foundation nlx_99161 SCR_005044 2026-08-03 09:32:35 126
Cliniques Universitaires Saint-Luc Cancer Centre
 
Resource Report
Resource Website
Cliniques Universitaires Saint-Luc Cancer Centre (RRID:SCR_004922) Cliniques Universitaires Saint-Luc Cancer Centre topical portal, data or information resource, portal, training resource An essential reference center in Europe and a leader in French-speaking Belgium that treats all types of adult and childhood cancer. They fight against cancer while giving patients comprehensive and humane care. Their quest for excellence is in three main academic fields: clinical care, research and teaching. cancer, adult human, child, clinical, oncology, research, young human is parent organization of: Saint-Luc Tumour Bank Cancer nlx_143961 http://www.centreducancer.be/en SCR_004922 Centre du Cancer Cliniques Universitaires St-Luc, Cliniques Universitaires Saint-Luc Cancer Center 2026-08-03 09:32:45 0
NCI SEER Cancer Statistics Review
 
Resource Report
Resource Website
100+ mentions
NCI SEER Cancer Statistics Review (RRID:SCR_024685) topical portal, data or information resource, portal, disease-related portal Platform to report outlining trends in cancer statistics and methods to derive various cancer statistics from the Surveillance, Epidemiology, and End Results (SEER) program. Authoritative source for cancer statistics in the United States. trends in cancer, cancer statistics, methods to derive various cancer statistics, Surveillance, Epidemiology, and End Results program, SEER program, cancer NCI Free, Freely available https://seer.cancer.gov/ SCR_024685 SEER Cancer Statistics Review, , National Cancer Institute SEER Cancer Statistics Review, NIH NCI Surveillance, Epidemiology, and End Results Cancer Statistics Review, NIH NCI SEER Cancer Statistics Review 2026-08-03 09:38:47 345
Cancer Information Service
 
Resource Report
Resource Website
Cancer Information Service (RRID:SCR_024445) topical portal, data or information resource, portal, disease-related portal Portal provides information on Cancer Statistics in Japan. Official website operated by National Cancer Center for cancer information. Cancer statistics in Japan, National Cancer Center, cancer information, cancer Free, Freely available SCR_024445 Cancer Information Service in Japan 2026-08-03 09:38:17 0
Central England Haemato-Oncology Research Biobank
 
Resource Report
Resource Website
Central England Haemato-Oncology Research Biobank (RRID:SCR_004637) CEHRB material resource, biomaterial supply resource, cell repository The Central England Haemato-Oncology Research Biobank stores excess material from oncology samples referred for diagnostic testing and disease monitoring at the West Midlands Regional Genetics Laboratory (WMRGL). The bank is housed within the WMRGL. Types of material stored include viable cells, fixed cell suspensions, DNA, RNA / cDNA, and plasma. The material is made available to all cancer research groups both locally and nationally. Excess sample (mainly from blood and bone marrow) is stored from diagnostic patient material and from samples received throughout their disease course. The WMRGL serves a population of about 5.5 million and is the largest UK NHS genetic Lab. Due to the large patient population CEHRB is able to collate sufficient research material from all classifications of neoplastic haematological disorders including those that are rare. rare, ontology, hematology, tumor, oncology is listed by: One Mind Biospecimen Bank Listing Cancer, Neoplastic hematological disorder Public: The material is made available to all cancer research groups both locally and nationally. nlx_63387 http://www.bwhct.nhs.uk/genetics-index/reglab_oncology.htm, http://www.bwhct.nhs.uk/genetics-index/central_england_haemato-oncology_research_biobank.htm SCR_004637 Central England Haemato-Oncology Research Biobank (CEHRB) 2026-08-03 09:32:29 0
Wistar Institute Collection at Coriell
 
Resource Report
Resource Website
Wistar Institute Collection at Coriell (RRID:SCR_004660) Wistar Collection material resource, biomaterial supply resource, cell repository Collection of cell lines developed by Wistar scientists that includes a group of hybridomas that produce monoclonal antibodies that are useful in influenza research and vaccine development, melanoma cell lines derived from patients with diseases ranging from mild dysplasia to advanced metastatic cancer and a range of human endothelial cell lines. hybridoma, monoclonal antibody, antibody, cell line, melanoma cell line, endothelial cell line, smooth muscle cell line, disease, cancer, dysplasia, metastatic cancer is listed by: One Mind Biospecimen Bank Listing
has parent organization: Coriell Cell Repositories
has parent organization: Wistar Institute
Disease, Cancer, Dysplasia, ( Diseases ranging from mild dysplasia to advanced metastatic cancer ) Non-commercial, For research conducted by universities, Government agencies and academic research centers, Commercial with license nlx_143856 SCR_004660 2026-08-03 09:32:39 0
Human Tumor Atlas Network
 
Resource Report
Resource Website
10+ mentions
Human Tumor Atlas Network (RRID:SCR_023364) HTAN portal, disease-related portal, topical portal, atlas, data or information resource HTAN is National Cancer Institute funded Cancer Moonshot initiative to construct 3-dimensional atlases of dynamic cellular, morphological, and molecular features of human cancers as they evolve from precancerous lesions to advanced disease.Provides three dimensional atlases of cancer transitions for diverse set of tumor types. Efforts to map healthy organs and previous large-scale cancer genomics approaches focused on bulk sequencing at single point in time. Data portal for Human Tumor Atlas Network. Data available on HTAN Portal is open access. Certain data types with potential for re-identification are available in restricted access through dbGAP. Three dimensional atlases, cancer transitions, diverse set of tumor types, map healthy organs, cancer genomics approaches, bulk sequencing at single point in time, data, precancerous lesions to advanced disease, cancer National Cancer Institut Cancer Moonshot Initiative PMID:32302568 Free, Freely available SCR_023364 2026-08-03 09:38:21 27

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