Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Issues Status:no known issues (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

26,884 Results - per page

Show More Columns | Download Top 1000 Results

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
PlaForNEA
 
Resource Report
Resource Website
PlaForNEA (RRID:SCR_022027) software application, simulation software, software resource Software allows estimating growth and production at stand level of main forest species implanted in Argentine Mesopotamia such as Pino taeda, Eucalyptus grandis, Pino elliottii and Araucaria angustifolia. Areas for which models were adjusted correspond to province of Misiones, northeast of Corrientes and Concordia in province of Entre Ríos. estimating growth and production, forest species, Argentine Mesopotamia Free, Available for download, Freely available https://plafornea.software.informer.com/ SCR_022027 PLAFORNEA 2026-08-14 09:28:41 0
National Microbiome Data Collaborative
 
Resource Report
Resource Website
1+ mentions
National Microbiome Data Collaborative (RRID:SCR_022161) NMDC data or information resource, portal, topical portal Platform facilitates comprehensive discovery of and access to multidisciplinary microbiome data in order to unlock new possibilities with microbiome data science. Multi organizational effort to integrate microbiome data across diverse areas in medicine, agriculture, bioenergy, and environment. Founded to support long term advancement of microbiome science. Microbiome data exploration and discovery, microbiome data, microbiome data science ecosystem, microbiome data, microbiome data discovery portal, FAIR, FAIRsharing Free, Freely available https://github.com/microbiomedata/nmdc-schema SCR_022161 2026-08-14 09:28:37 2
MDAR
 
Resource Report
Resource Website
MDAR (RRID:SCR_022038) data or information resource, portal, topical portal MDAR Framework establishes minimum set of requirements in transparent reporting applicable to studies in life sciences. MDAR checklist is tool for authors, editors and others seeking to adopt MDAR framework for transparent reporting in manuscripts and other outputs and designed to provide harmonizing principle for reporting requirements currently in use at various journals. methods, Materials Design Analysis Reporting, requirements in transparent reporting, manuscript, journal, harmonizing principle for reporting PMID:33893240 Free, Freely available https://www.incf.org/mdar, https://mfr.osf.io/render?url=https://osf.io/xfpn4/?direct%26mode=render%26action=download%26mode=render SCR_022038 Materials Design Analysis Reporting 2026-08-14 09:28:42 0
EL MAVEN
 
Resource Report
Resource Website
10+ mentions
EL MAVEN (RRID:SCR_022159) data processing software, software application, data analysis software, software resource Open source LC-MS data processing engine for simplifying metabolomics analysis. Mass spectrometry data processing engine that is optimal for isotopomer labeling and global metabolomic profiling experiments. Interactive software platform that accelerates analysis of LC-MS, GC-MS, and LC-MS/MS datasets. Mass spectrometry data processing engine, metabolomics analysis, LC-MS data analysis, metabolomic datasets analysis, Elucidata, MAVEN PMID:31119671 Free, Available for download, Freely available https://github.com/ElucidataInc/ElMaven SCR_022159 EL-MAVEN 2026-08-14 09:28:42 10
granulator
 
Resource Report
Resource Website
1+ mentions
granulator (RRID:SCR_022158) data processing software, software application, data analysis software, software resource Software R package for cell type deconvolution of heterogeneous tissues based on bulk RNAseq data or single cell RNAseq expression profiles.Provides unified testing interface to rapidly run and benchmark multiple deconvolution methods. cell type deconvolution, heterogeneous tissues, RNAseq data, estimate cell type proportions, bulk transcriptomics data, unified testing interface Free, Available for download, Freely available https://github.com/xanibas/granulator SCR_022158 2026-08-14 09:28:27 3
SEED
 
Resource Report
Resource Website
500+ mentions
SEED (RRID:SCR_002129) SEED database, production service resource, data analysis service, data or information resource, data set, service resource, analysis service resource The SEED is a framework to support comparative analysis and annotation of genomes. The cooperative effort focuses on the development of the comparative genomics environment and, more importantly, on the development of curated genomic data. Curation of genomic data (annotation) is done via the curation of subsystems by an expert annotator across many genomes, not on a gene by gene basis. From the curated subsystems we extract a set of freely available protein families (FIGfams). These FIGfams form the core component of our RAST automated annotation technology. Answering numerous requests for automatic Seed-Quality annotations for more or less complete bacterial and archaeal genomes, we have established the free RAST-Server (RAST=Rapid Annotation using Subsytems Technology). Using similar technology, we make the Metagenomics-RAST-Server freely available. We also provide a SEED-Viewer that allows read-only access to the latest curated data sets. We currently have 58 Archaea, 902 Bacteria, 562 Eukaryota, 1254 Plasmids and 1713 Viruses in our database. All tools and datasets that make up the SEED are in the public domain and can be downloaded at ftp://ftp.theseed.org environmental genome, eukaryal, archaeal, bacterial, viral, FASEB list has parent organization: Fellowship for Interpretation of Genomes
has parent organization: University of Chicago; Illinois; USA
has parent organization: Argonne National Laboratory
PMID:16214803 Free, Freely Available nif-0000-20923 http://www.theseed.org/wiki/Main_Page SCR_002129 The SEED 2026-08-14 09:24:31 512
CancerMIRNome
 
Resource Report
Resource Website
10+ mentions
CancerMIRNome (RRID:SCR_022092) database, web service, data or information resource, data access protocol, software resource Web server for cancer miRNome interactive analysis and visualization based on human miRNome data of cancer types from The Cancer Genome Atlas, and public cancer circulating miRNome profiling datasets from NCBI Gene Expression Omnibus and ArrayExpress. Comprehensive database for interactive analysis and visualization of miRNA expression profiles. cancer miRNome interactive analysis, human miRNome data, cancer data, miRNA expression profiles is related to: The Cancer Genome Atlas
is related to: ArrayExpress
Riverside Faculty Start-up Fund ;
UC Cancer Research Coordinating Committee Competition Award ;
UC Academic Senate CoR Research Grant ;
United States Department of Agriculture ;
National Natural Science Foundation of China ;
Science and Technology Project of Guizhou Province
DOI:10.1093/nar/gkab784 Free, Freely available SCR_022092 2026-08-14 09:28:37 48
Human Genetics Laboratory: WFS1 Gene Mutation and Polymorphism Database
 
Resource Report
Resource Website
1+ mentions
Human Genetics Laboratory: WFS1 Gene Mutation and Polymorphism Database (RRID:SCR_001113) database, data repository, storage service resource, data or information resource, service resource This web site lists the disease causing mutations and polymorphisms found in the Wolfram syndrome (WFS1) gene. Sponsors: This resource is supported by the University of Michigan at Ann Arbor. frequency, gene, auditory, disease, hearing, neuropathy, polymorphism, research, wolfram syndrome has parent organization: University of Michigan; Ann Arbor; USA nif-0000-10276 SCR_001113 WFS1 2026-08-14 09:24:13 3
Qvalue
 
Resource Report
Resource Website
10+ mentions
Qvalue (RRID:SCR_001073) data processing software, software application, data analysis software, software resource R package that takes a list of p-values resulting from the simultaneous testing of hypotheses and estimates their q-values. It is designed to measure the proportion of false positives when a test is significant. The software is capable of generating plots for visualization. It can be applied to problems in genomics, brain imaging, astrophysics, and data mining. p value, false positive, null hypothesis, genomics, brain imaging, astrophysics, data mining, r, visualization is listed by: OMICtools
is hosted by: Bioconductor
Free, Available for download, Freely available OMICS_00624 https://github.com/jdstorey/qvalue SCR_001073 2026-08-14 09:24:14 32
eNeoTutor
 
Resource Report
Resource Website
eNeoTutor (RRID:SCR_001590) eNeoTutor data or information resource, training material, software application, software resource, narrative resource THIS RESOURCE IS NO LONGER IN SERVICE, documented August 17, 2016. ASP.NET AJAX .NET 4, Telerik controls enabled application designed to be used with the books presented, papers and web content to help with the acceleration of learning and software development for the neurosciences. All content developed at The Cromwell Workshop is intended to accelerate the implementation of biomedical knowledge, help with EEG clinical certifications and provide the opportunity for students, software developers, neuroscientists, neurologists and neurosurgeons to collaborate globally with knowledge content. e-NeoTutor relies on a subscription model to build software components in multiple languages and access book material. Tutor designed to complement free online course content in neuroscience, work with the Society of Neuroscience, The Human Connectome Project and assist researchers with CNIM certification, biomedical informatics, neuroinformatics and neuroscience training programs. neuroscience, curriculum, brain computer interface, eeg, tutorial, software development is related to: iBIOFind
has parent organization: The Cromwell Workshop
THIS RESOURCE IS NO LONGER IN SERVICE nlx_153831 http://neuronalarchitects.com/eneotutor.html SCR_001590 e-NeoTutor 2026-08-14 09:24:19 0
ToppCluster
 
Resource Report
Resource Website
100+ mentions
ToppCluster (RRID:SCR_001503) ToppCluster production service resource, data analysis service, resource, service resource, analysis service resource A tool for performing multi-cluster gene functional enrichment analyses on large scale data (microarray experiments with many time-points, cell-types, tissue-types, etc.). It facilitates co-analysis of multiple gene lists and yields as output a rich functional map showing the shared and list-specific functional features. The output can be visualized in tabular, heatmap or network formats using built-in options as well as third-party software. It uses the hypergeometric test to obtain functional enrichment achieved via the gene list enrichment analysis option available in ToppGene. term enrichment, gene, analysis, gene enrichment analysis, connectivity, heatmap, ortholog, microarray, function, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is related to: GenitoUrinary Development Molecular Anatomy Project
is related to: ToppGene Suite
NIDDK 1U01DK70219;
NIDDK P30DK078392;
NCRR U54 RR025216;
NIDCR U01DE020049
PMID:20484371 Free OMICS_02225, nlx_152801, biotools:toppcluster https://bio.tools/toppcluster SCR_001503 ToppCluster: A multiple gene list feature analyzer for the dissection of biological systems 2026-08-14 09:24:17 152
vIST/e
 
Resource Report
Resource Website
1+ mentions
vIST/e (RRID:SCR_001627) vIST/e software toolkit, image analysis software, image processing software, data processing software, software application, software resource Open source, platform-independent application for the visualization and analysis of complex, high-dimensional imaging data such as Diffusion Tensor Imaging (DTI) and High Angular Resolution Diffusion Imaging (HARDI). It has a plugin-based architecture which allows third parties to develop new plugins to extend the tool. Overview of the many features: * vIST/e is programmed in C++. It uses the Visualization Toolkit for visualization and pipelined data processing, as well as the cross-platform toolkit Qt Framework for an easy-to-use Graphical User Interface. * vIST/e introduces a powerful new plugin system, which allows for modular development with increased extensibility and stability. * Powerful GPU-based visualization techniques allow for smooth, real-time visualization of large data sets. Using custom ray tracing algorithms created with OpenGL, vIST/e can render DTI ellipsoids and HARDI spherical harmonics glyphs up to 4th order. The high frame rates offered by modern GPU technology allows for interactive exploration of this complex data. * Diffusion Tensor Imaging data can be visualized and interactively explored in a number of ways, including multiple cross-sections, volume rendering, and tensor glyphs. Derived scalar volumes, including various different anisotropy measures, can be computed and visualized. Data from other modalities, such as structural MRI, can be shown alongside the DTI data. * Various fiber tracking methods allow for fast and accurate reconstruction of fiber pathways. Interactively defined Regions of Interest (ROIs) can be used for seeding and filtering of fibers. Fibers are visualized either as lines, optionally using a powerful, GPU-based lighting engine, or as 3D structures such as tubes. * Scalar volumes, glyphs, and fibers can be colored using a wide array of coloring option. Customizable color loop-up tables allow for highly flexible visualization of scalar data. * Visualization and processing of various different HARDI formats is supported. HARDI data is interactively visualized using highly detailed glyphs rendered on the GPU. HARDI glyphs can be visualized in combination with DTI glyphs, for a better overview of complex diffusion data. * vIST/e includes support for NVIDIA's Compute Unified Device Architecture (CUDA), which enables highly parallel, GPU-based data processing, allowing for significant speed-up of computationally expensive algorithms. diffusion tensor imaging, high angular resolution diffusion imaging, visualization, cross-section, volume rendering, tensor glyph, mri, fiber tracking is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Diffusion MRI of Traumatic Brain Injury
has parent organization: Eindhoven University of Technology; North Brabant; Netherlands
Free, Available for download, Freely available nlx_153923 http://www.nitrc.org/projects/viste SCR_001627 DTITool 2026-08-14 09:24:19 4
Sequence Tag Alignment and Consensus Knowledgebase Database
 
Resource Report
Resource Website
Sequence Tag Alignment and Consensus Knowledgebase Database (RRID:SCR_002156) database, data processing software, data or information resource, software application, software resource, data visualization software THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. The STACKdb is knowledgebase generated by processing EST and mRNA sequences obtained from GenBank through a pipeline consisting of masking, clustering, alignment and variation analysis steps. The STACK project aims to generate a comprehensive representation of the sequence of each of the expressed genes in the human genome by extensive processing of gene fragments to make accurate alignments, highlight diversity and provide a carefully joined set of consensus sequences for each gene. The STACK project is comprised of the STACKdb human gene index, a database of virtual human transcripts, as well as stackPACK, the tools used to create the database. STACKdb is organized into 15 tissue-based categories and one disease category. STACK is a tool for detection and visualization of expressed transcript variation in the context of developmental and pathological states. The data system organizes and reconstructs human transcripts from available public data in the context of expression state. The expression state of a transcript can include developmental state, pathological association, site of expression and isoform of expressed transcript. STACK consensus transcripts are reconstructed from clusters that capture and reflect the growing evidence of transcript diversity. The comprehensive capture of transcript variants is achieved by the use of a novel clustering approach that is tolerant of sub-sequence diversity and does not rely on pairwise alignment. This is in contrast with other gene indexing projects. STACK is generated at least four times a year and represents the exhaustive processing of all publicly available human EST data extracted from GenBank. This processed information can be explored through 15 tissue-specific categories, a disease-related category and a whole-body index exonic, expressed, expressed sequence tag (est), expression, fragment, gene, alignment, alternative gene, cdna, clone, cluster, developmental, disease, diversity, genome, homo sapiens, human, isoform, knowledgebase, meta-cluster, mrna, pathological, sequence, tissue, transcript, variant, visualization PMID:11125101 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-20946 SCR_002156 STACKdb 2026-08-14 09:24:28 0
StAMPP
 
Resource Report
Resource Website
1+ mentions
StAMPP (RRID:SCR_022022) data processing software, software application, data analysis software, software resource Software R package for statistical analysis of mixed ploidy populations.Used for calculation of population structure and differentiation based on single nucleotide polymorphism genotype data from populations of any ploidy level, and/or mixed ploidy levels. statistical analysis, mixed ploidy populations, single nucleotide polymorphism genotype data is related to: R Project for Statistical Computing Victorian Department of Primary Industries ;
Geoffrey Gardiner Foundation ;
Meat and Livestock Australia ;
New Zealand Agriseeds ;
Christchurch ;
New Zealand ;
Australian Postgraduate Award ;
Dairy Futures CRC
DOI:10.1111/1755-0998.12129 Free, Available for download, Freely available https://github.com/lpembleton/StAMPP SCR_022022 2026-08-14 09:28:35 6
hierfstat
 
Resource Report
Resource Website
10+ mentions
hierfstat (RRID:SCR_022021) data processing software, software application, data analysis software, software resource Software R package for estimation and tests of hierarchical F statistics.Used to estimate hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in hierarchy.Intended for analysis of population structure using genetic markers. estimation and tests of hierarchical F statistics, haploid or diploid genetic data, analysis of population structure, genetic markers DOI:10.1093/genetics/144.4.1933
DOI:10.1534/genetics.116.198424
Free, Available for download, Freely available https://github.com/jgx65/hierfstat SCR_022021 2026-08-14 09:28:41 11
UK Sheep Genome Mapping Project
 
Resource Report
Resource Website
1+ mentions
UK Sheep Genome Mapping Project (RRID:SCR_002272) data or information resource, portal, database, topical portal THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. The project aims to apply genome mapping research to sheep, utilizing previous research in sheep (in other countries) and in other species (in the UK and abroad) to the benefit of the UK sheep industry. The project itself uses existing breeding structures, knowledge of the sheep genome and experimental resources. It has three main aims: i) To use the Suffolk, Texel and Charollais Sire Referencing Schemes to detect and verify quantitative trait loci (QTLs) for growth and carcass composition traits ii) To investigate candidate genes and/or chromosomal regions for associations with production traits. iii) To investigate approaches for optimizing future genotyping strategies within the sire referencing schemes for practical and cost effective application of marker-assisted selection By using commercial breeding populations for the research, immediate application of beneficial results is possible. Potential benefits include increased genetic progress through marker assisted selection which utilizes the genotype information, correction of possible parentage errors (ultimately leading to additional genetic progress) and opportunities for using marker information for product certification. The project will benefit the UK sheep industry by the use of Marker Assisted Selection (MAS) utilizing QTL or gene variants identified in the project. Additional benefits may arise from parentage verification and correction of errors e.g. misallocation of lamb to ewe. In the longer term, opportunities may exist to use markers for quality control, tracing products to their source. The major advantage of the design of this project is that the results are immediately applicable to the breeding schemes within which the QTLs and/or genes are detected. The time lag in the application of the results that is often seen with experimental populations is minimized. The project requires close involvement with the Sire Reference Schemes, in return for their assistance the results have immediate benefit to animals within these groups. gene, animal, breed, breeding, chromosomal, chromosome, genome, genotype, genotyping, lamb, map, mapping, marker, population, production, region, sheep, specie, structure, trait THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-20995 SCR_002272 UKSGMP 2026-08-14 09:24:29 1
Mind Research Network - COINS
 
Resource Report
Resource Website
10+ mentions
Mind Research Network - COINS (RRID:SCR_000805) COINS data repository, storage service resource, data or information resource, data set, service resource A web-based neuroimaging and neuropsychology software suite that offers versatile, automatable data upload/import/entry options, rapid and secure sharing of data among PIs, querying and export all data, real-time reporting, and HIPAA and IRB compliant study-management tools suitable to large institutions as well as smaller scale neuroscience and neuropsychology researchers. COINS manages over over 400 studies, more than 265,000 clinical neuropsychological assessments, and 26,000 MRI, EEG, and MEG scan sessions collected from 18,000 participants at over ten institutions on topics related to the brain and behavior. As neuroimaging research continues to grow, dynamic neuroinformatics systems are necessary to store, retrieve, mine and share the massive amounts of data. The Collaborative Informatics and Neuroimaging Suite (COINS) has been created to facilitate communication and cultivate a data community. This tool suite offers versatile data upload/import/entry options, rapid and secure sharing of data among PIs, querying of data types and assessments, real-time reporting, and study-management tools suitable to large institutions as well as smaller scale researchers. It manages studies and their data at the Mind Research Network, the Nathan Kline Institute, University of Colorado Boulder, the Olin Neuropsychiatry Research Center (at) Hartford Hospital, and others. COINS is dynamic and evolves as the neuroimaging field grows. COINS consists of the following collaboration-centric tools: * Subject and Study Management: MICIS (Medical Imaging Computer Information System) is a centralized PostgreSQL-based web application that implements best practices for participant enrollment and management. Research site administrators can easily create and manage studies, as well as generate reports useful for reporting to funding agencies. * Scan Data Collection: An automated DICOM receiver collects, archives, and imports imaging data into the file system and COINS, requiring no user intervention. The database also offers scan annotation and behavioral data management, radiology review event reports, and scan time billing. * Assessment Data Collection: Clinical data gathered from interviews, questionnaires, and neuropsychological tests are entered into COINS through the web application called Assessment Manager (ASMT). ASMT's intuitive design allows users to start data collection with little or no training. ASMT offers several options for data collection/entry: dual data entry, for paper assessments, the Participant Portal, an online tool that allows subjects to fill out questionnaires, and Tablet entry, an offline data entry tool. * Data Sharing: De-identified neuroimaging datasets with associated clinical-data, cognitive-data, and associated meta-data are available through the COINS Data Exchange tool. The Data Exchange is an interface that allows investigators to request and share data. It also tracks data requests and keeps an inventory of data that has already been shared between users. Once requests for data have been approved, investigators can download the data directly from COINS. mri, fmri, neuropsychological assessment, neuroimaging, diffusion tensor imaging assay, magnetic resonance imaging assay, functional mri assay, diffusion magnetic resonance imaging, magnetoencephalography, electroencephalography, brain, behavior, data sharing, data management, clinical, computed tomography, magnetic resonance, single photon emission computed tomography, positron emission tomography, clinical assessment clinical neuroinformatics, image collection, mri 2d image, database application is used by: Consortium for Reliability and Reproducibility
is used by: DataLad
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: NKI-RS Enhanced Sample
has parent organization: Mind Research Network
is parent organization of: MCIC
Aging NIBIB 1 R01 EB 000840;
NIBIB 1 R01 EB 006841;
NIBIB 1 R01 EB 005846
PMID:22275896 THIS RESOURCE IS NO LONGER IN SERVICE nlx_144067 http://www.nitrc.org/projects/coins SCR_000805 Mind Research Network - Collaborative Informatics and Neuroimaging Suite, Collaborative Informatics Neuroimaging Suite, Collaborative Informatics and Neuroimaging Suite 2026-08-14 09:24:10 20
Tandem Repeats Finder
 
Resource Report
Resource Website
500+ mentions
Tandem Repeats Finder (RRID:SCR_022193) TRF data processing software, software application, data analysis software, software resource, sequence analysis software Software tool to locate and display tandem repeats in DNA sequences. Program to analyze DNA sequences. nucleotides pattern, pattern copies, DNA tandem repeat, DNA sequences, locate tandem repeats NSF CCR9623532 PMID:9862982 Free, Available for download, Freely available https://tandem.bu.edu/trf/trf.html SCR_022193 2026-08-14 09:28:38 544
Pathway Analysis Tool for Integration and Knowledge Acquisition
 
Resource Report
Resource Website
1+ mentions
Pathway Analysis Tool for Integration and Knowledge Acquisition (RRID:SCR_002100) PATIKA data or information resource, pathway analysis software, database The human pathway database which contains different biological entities and reactions and software tools for analysis. PATIKA Database integrates data from several sources, including Entrez Gene, UniProt, PubChem, GO, IntAct, HPRD, and Reactome. Users can query and access this data using the PATIKAweb query interface. Users can also save their results in XML or export to common picture formats. The BioPAX and SBML exporters can be used as part of this Web service. human, pathway, reaction, database, pathway analysis software, web service, biological entity, biological reaction uses: Entrez Gene
uses: UniProt
uses: PubChem
uses: Gene Ontology
uses: IntAct
uses: HPRD - Human Protein Reference Database
uses: Reactome
PMID:12117798
PMID:14960461
THIS RESOURCE IS NO LONGER IS SERVICE. nif-0000-20882 http://www.cs.bilkent.edu.tr/~patikaweb/ SCR_002100 Pathway Analysis Tool for Integration and Knowledge Acquisition (PATIKA), PATIKA - Pathway Analysis Tools for Integration and Knowledge Acquisition 2026-08-14 09:24:26 2
BWA-MEM2
 
Resource Report
Resource Website
5000+ mentions
BWA-MEM2 (RRID:SCR_022192) data processing software, software application, data analysis software, software resource, sequence analysis software Software tool for sequence mapping.The next version of BWA-MEM. Used for aligning sequencing reads against large reference genome. Intel Corporation, sequence mapping, aligning sequencing reads, large reference genome, Burrows-Wheeler Aligner, is related to: BWA DOI:10.1109/IPDPS.2019.00041 Free, Available for download, Freely available SCR_022192 BWA-MEM 2026-08-14 09:28:43 5566

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. RRID Portal Resources

    Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.