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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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TetraScience Resource Report Resource Website |
TetraScience (RRID:SCR_013977) | data management software, data processing software, software application, software resource, data acquisition software | A software provider which supplies researchers with software that enables remote monitoring and management of experiments. TetraScience provides software for managing lab cameras, sensors, electrical switches, adapters, and timers. Users are notified by text or email of lab proceedings and alerts. | remote management, management tool, data aacquisiton, data management, software |
is listed by: Connected Researchers is related to: Connected Researchers |
SCR_013977 | 2026-08-14 09:26:45 | 0 | |||||||||||
|
Signal Resource Report Resource Website 500+ mentions |
Signal (RRID:SCR_014276) | data processing software, software application, data analysis software, software resource, data acquisition software | A sweep-based data acquisition and analysis software package. Its uses range from a simple storage oscilloscope to complex applications requiring stimulus generation, data capture, control of external equipment and custom analysis. A built-in script language automates tasks and provides additional tools for custom analyses and applications. Signal includes functions for specific application areas, including dynamic clamp, whole cell and patch clamp electrophysiology, and evoked response including control of magnetic and other stimulus devices. Video tutorials and a demo version of Signal is available on the main page. | sweep based, data acquisition software, data analysis software, | Pay for product | SCR_014276 | 2026-08-14 09:27:04 | 737 | |||||||||||
|
Michigan State University Labs and Facilities Resource Report Resource Website |
Michigan State University Labs and Facilities (RRID:SCR_012252) | MSU Labs & Facilities, MSU Labs and Facilities | access service resource, portal, data or information resource, service resource, core facility | An Portal, Core facility |
is listed by: ScienceExchange is related to: Michigan State University RTSF Genomics Core Facility is related to: MSU Comprehensive Phytopathogen Genomics Resource has parent organization: Michigan State University; Michigan; USA |
SciEx_1277 | SCR_012252 | Michigan State University Labs & Facilities | 2026-08-14 09:26:23 | 0 | |||||||||
|
Psykinematix Resource Report Resource Website 10+ mentions |
Psykinematix (RRID:SCR_014830) | standalone software, data processing software, software application, data analysis software, software resource, data acquisition software | Standalone solution dedicated to Visual Psychophysics running on Mac OS X. Psykinematix runs standard psychophysical protocols, presents complex stimuli, collects subject's responses, and analyzes results on the fly. It consists of a unique OpenGL-based software package that does not require any programming skill to create and run complex experiments. | psychophysics, visual psychophysics, standalone, mac, data analysis, data acquisition, experiment | Demo is available, Available for download, License required | SCR_014830 | 2026-08-14 09:27:11 | 21 | |||||||||||
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Yale School of Medicine Pharmacology Resource Report Resource Website |
Yale School of Medicine Pharmacology (RRID:SCR_010594) | organization portal, data or information resource, department portal, portal | The Department of Pharmacology at Yale University offers integrated and interdisciplinary opportunities for graduate study under the newly organized Program in Biological and Biomedical Sciences (BBS). Students entering the BBS program can take courses, participate in laboratory rotations, and perform thesis research with any of the more than 200 faculty members in the biological sciences at Yale located at the closely situated School of Medicine and Science Hill ends of campus. The faculty and students of the BBS program are organized into moderately-sized, interest-based Tracks to ensure individualized attention and maximize scientific interactions. Prospective students apply to the Track that best matches their interests, although there is complete freedom to work with faculty members in any Track or to switch Tracks after arrival at Yale. | has parent organization: Yale School of Medicine; Connecticut; USA | nlx_47908 | SCR_010594 | YSM Pharmacology | 2026-08-14 09:26:19 | 0 | ||||||||||
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National Institute on Drug Abuse Center for Genetic Studies Resource Report Resource Website 1+ mentions |
National Institute on Drug Abuse Center for Genetic Studies (RRID:SCR_013061) | NIDA Center for Genetic Studies | data repository, storage service resource, data or information resource, data set, service resource | Site for collection and distribution of clinical data related to genetic analysis of drug abuse phenotypes. Anonymous data on family structure, age, sex, clinical status, and diagnosis, DNA samples and cell line cultures, and data derived from genotyping and other genetic analyses of these clinical data and biomaterials, are distributed to qualified researchers studying genetics of mental disorders and other complex diseases at recognized biomedical research facilities. Phenotypic and Genetic data will be made available to general public on release dates through distribution mechanisms specified on website. | drug abuse, family, family structure, genetic analysis, genetics, addiction, age, biomaterial, cell line, citation, clinical, clinical status, data, diagnosis, dna, genotyping, human, mental disorder, mutation analysis, phenotype, publications, sex, clinical data, genotype, gene, GWAS |
is recommended by: National Library of Medicine is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: NIH Data Sharing Repositories has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA has parent organization: Rutgers University; New Jersey; USA |
NIDA ; NIH Blueprint for Neuroscience Research |
Free, Freely available | nif-0000-00181 | https://zork5.wustl.edu//nida/ | http://zork.wustl.edu/nida/ | SCR_013061 | National Institute of Drug Abuse (NIDA) Human Genetics Initiative, NIDA Center for Genetic Studies | 2026-08-14 09:26:39 | 7 | ||||
|
NIH-CIDI Lung Segmentation Tool Resource Report Resource Website 1+ mentions |
NIH-CIDI Lung Segmentation Tool (RRID:SCR_014150) | image analysis software, data processing software, software application, software resource, segmentation software | A segmentation tool for the segmentation of a lung from CT images. The sofware can be run in two modes: fully automatic and semi-automatic with manual seeding by the user. The software also allows the user to perform basic filtering operations and manual correction to the segmentation. The VTK-based rendering implementation, along with option to view in axial, coronal, and sagittal, provides the user with better visualization of the segmented lung. | segmentation software, lung, ct image, visualization |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: National Institutes of Health |
PMID:25570151 | Open source | SCR_014150 | CIDI-lung-seg, CIDI Lung Seg | 2026-08-14 09:26:47 | 1 | ||||||||
|
ImmunoStar Resource Report Resource Website 500+ mentions |
ImmunoStar (RRID:SCR_013473) | commercial organization, reagent supplier, antibody supplier, material resource | An Antibody supplier | nlx_152388 | SCR_013473 | Immunonuclear, Diasorin, Incstar, Immuno Nuclear, ImmunoStar inc. | 2026-08-14 09:26:40 | 661 | |||||||||||
|
ICZN Resource Report Resource Website 10+ mentions |
ICZN (RRID:SCR_010241) | standard specification, portal, data or information resource, international standard specification, organization portal, narrative resource | An organization that acts as adviser and arbiter for the zoological community by generating and disseminating information on the correct use of the scientific names of animals. The ICZN is responsible for producing the International Code of Zoological Nomenclature - a set of rules for the naming of animals and the resolution of nomenclatural problems. | nlx_156873 | SCR_010241 | International Commission on Zoological Nomenclature | 2026-08-14 09:26:18 | 16 | |||||||||||
|
xFITOM Resource Report Resource Website 1+ mentions |
xFITOM (RRID:SCR_014445) | standalone software, data processing software, software application, data analysis software, software resource, sequence analysis software | A fully customizable program that uses a graphical user interface to locate transcription factor-binding sites in genomic sequences. xFITOM scans DNA or RNA sequences for putative binding sites as defined by a collection of aligned known sites, a consensus sequence in IUPAC degenerate-base format, or a combination of the two. | transcription factor, binding site, information theory, customizable program, sequence analysis software |
uses: GenBank is related to: CollecTF |
PMID:21346861 | Available for download, Acknowledgement requested | http://www.mybiosoftware.com/fitom-1-0-detection-binding-sites-dna-rna-sequences.html | compbio.umbc.edu/Software/xFITOM/ http://research.umbc.edu/~erill/ | SCR_014445 | 2026-08-14 09:27:06 | 7 | |||||||
|
PLINK/SEQ Resource Report Resource Website 50+ mentions |
PLINK/SEQ (RRID:SCR_013193) | software toolkit, software application, software resource, software library | An open-source C/C++ library for working with human genetic variation data. The specific focus is to provide a platform for analytic tool development for variation data from large-scale resequencing projects, particularly whole-exome and whole-genome studies. However, the library could in principle be applied to other types of genetic studies, including whole-genome association studies of common SNPs. (entry from Genetic Analysis Software) | gene, genetic, genomic, c/c++, r, macos, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: PLINK has parent organization: Harvard University; Cambridge; United States |
Open unspecified license | nlx_154213, biotools:plink-seq | https://bio.tools/plink-seq | SCR_013193 | 2026-08-14 09:26:37 | 77 | ||||||||
|
LeafCutter Resource Report Resource Website 10+ mentions |
LeafCutter (RRID:SCR_017639) | data processing software, software application, data analysis software, data analytics software, software resource | Software tool for identifying and quantifying RNA splicing variation. Used to study sample and population variation in intron splicing. Identifies variable intron splicing events from short read RNA-seq data and finds alternative splicing events of high complexity. Used for detecting differential splicing between sample groups, and for mapping splicing quantitative trait loci (sQTLs). | Identify, quantitate, RNA, splicing, variation, intron, short, read, RNAseq, data, mapping, trait, loci, sQTL | has parent organization: Stanford University; Stanford; California | CEHG Fellowship ; Howard Hughes Medical Institute ; NHGRI HG007036; NHGRI HG008140; NHGRI HG009431; NIMH R01 MH107666 |
PMID:29229983 DOI:10.1038/s41588-017-0004-9 |
Free, Available for download, Freely available | SCR_017639 | 2026-08-14 09:28:10 | 32 | ||||||||
|
HiC-Pro Resource Report Resource Website 100+ mentions |
HiC-Pro (RRID:SCR_017643) | data processing software, software application, software resource, workflow software | Software tool as optimized and flexible pipeline for Hi-C data processing. Used to process Hi-C data, from raw fastq files, paired end Illumina data, to normalized contact maps. | Hi-C, data, raw, fastq, file, paired, Illumina, normalized, contact, map, bio.tools |
is listed by: Debian is listed by: bio.tools |
France Genomique National infrastructure ; Labex Deep ; European Research Coucil ; ERC Advanced Investigator award ; European Commission ; ABS4NGS project ; National Human Genome Research Institute ; Paris Alliance of Cancer Research Institutes ; Howard Hughes Medical Institute |
PMID:26619908 | Free, Available for download, Freely available | biotools:hic-pro | https://bio.tools/hic-pro | SCR_017643 | 2026-08-14 09:27:49 | 238 | ||||||
|
Gwyddion Resource Report Resource Website 1000+ mentions |
Gwyddion (RRID:SCR_015583) | data processing software, software application, data analysis software, software resource | Modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for the analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM) and it supports a lot of SPM data formats. However, it can be used for general height field and (greyscale) image processing, for instance for the analysis of profilometry data or thickness maps from imaging spectrophotometry. | spm data analysis, spm data visualization, height field analysis |
is listed by: Debian is listed by: OMICtools is listed by: SoftCite |
Czech Metrology Institute Department of Nanometrology | DOI:10.2478/s11534-011-0096-2 | Open source | OMICS_07548 | https://sources.debian.org/src/gwyddion/ | SCR_015583 | 2026-08-14 09:27:27 | 1661 | ||||||
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Thunder Resource Report Resource Website 10+ mentions |
Thunder (RRID:SCR_016556) | image analysis software, data processing software, software application, data analysis software, software resource | Software package for the analysis of image and time series data in Python. Provides data structures and algorithms for loading, processing, and analyzing these data. Runs locally or against a Spark cluster with an identical API. | Free, Available for download, Freely available, Tutorial available | https://github.com/thunder-project/thunder | SCR_016556 | 2026-08-14 09:27:26 | 10 | |||||||||||
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cgpPindel Resource Report Resource Website 10+ mentions |
cgpPindel (RRID:SCR_017090) | data processing software, software application, data analysis software, software resource | Software tool as cancer genome project insertion or deletion detection workflow for Pindel. | works with: Pindel | Free, Available for download, Freely available | http://cancerit.github.io/cgpPindel/ | SCR_017090 | 2026-08-14 09:27:41 | 26 | ||||||||||
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tenx Resource Report Resource Website 10+ mentions |
tenx (RRID:SCR_016957) | software toolkit, production service resource, data analysis service, software resource, service resource, analysis service resource | Pipeline for the analysis of 10x single cell RNA sequencing data. Collection of python3 pipelines and Rscripts to analyze data generated with the 10x Genomics platform. The pipelines are based on 10x's Cell Ranger pipeline for mapping and quantitation and the R Seurat package for downstream analysis. | analysis, 10x, single, cell, RNA, sequencing, data, genomic, platform, mapping, quantitation | Free, Available for download, Freely available | SCR_016957 | 2026-08-14 09:27:30 | 13 | |||||||||||
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Mizutani Lab 3D Structure Portal Resource Report Resource Website 1+ mentions |
Mizutani Lab 3D Structure Portal (RRID:SCR_016529) | laboratory portal, data repository, storage service resource, portal, data or information resource, service resource, organization portal | Departamental portal of Applied Biochemistry, School of Engineering, Tokai University, Japan. Used for computed tomography (CT) and visualizing 3D structures of biological soft tissues represented with Cartesian coordinates. | computed, tomography, visualize, 3D structure, biological, soft, tissue, imaging, sectioning, | Free, Available for download, Freely available, DVDs commercially available | SCR_016529 | 2026-08-14 09:27:25 | 2 | |||||||||||
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Marvel Resource Report Resource Website 1+ mentions |
Marvel (RRID:SCR_017621) | software toolkit, image analysis software, data processing software, software application, software resource, alignment software | Software set of tools that facilitate overlapping, patching, correction and assembly of noisy long reads. | Overlapping, patching, correction, assembly, noisy, long, read, sequence, align | Free, Available for download, Freely available | SCR_017621 | 2026-08-14 09:28:10 | 2 | |||||||||||
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Letswave Resource Report Resource Website 10+ mentions |
Letswave (RRID:SCR_016414) | software toolkit, data processing software, software application, software resource, data visualization software | Open source electroencephalogram (EEG) signal processing toolbox to process and visualise EEG/MEG data and other neurophysiological signals. | process, visualise, EEG, MEG, data, neurophysiological, signal, brain, neuroscience | is related to: MATLAB | Free, Available for download, Freely available | https://www.letswave.org/ | SCR_016414 | 2026-08-14 09:27:42 | 27 |
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