Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
ArrayExpress (R) Resource Report Resource Website 1+ mentions |
ArrayExpress (R) (RRID:SCR_000120) | ArrayExpress (R) | software resource | Software to access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet | microarray |
is listed by: OMICtools is related to: ArrayExpress has parent organization: Bioconductor has parent organization: European Bioinformatics Institute |
PMID:19505942 | Free, Available for download, Freely available | OMICS_01974 | SCR_000120 | 2026-08-15 11:21:40 | 1 | |||||||
|
TransGenic Resource Report Resource Website 10+ mentions |
TransGenic (RRID:SCR_000001) | commercial organization | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A commercial antibody supplier and knockout mice producer. | commercial organization, antibody supplier, knockout mouse | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152482 | SCR_000001 | Transgenic Inc, TransGenic Inc | 2026-08-15 11:21:39 | 11 | |||||||||
|
Academia.edu Resource Report Resource Website 1+ mentions |
Academia.edu (RRID:SCR_000080) | Academia.edu | community building portal, data or information resource, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Social networking site for academic researchers that allows researchers to share papers, find people working in a field and see analytics on papers etc | social networking, altmetrics, analytics, paper, research interest, job resource | is listed by: FORCE11 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152526 | SCR_000080 | 2026-08-15 11:21:41 | 9 | ||||||||
|
Neural Circuit Tracer Resource Report Resource Website 1+ mentions |
Neural Circuit Tracer (RRID:SCR_000116) | NCTracer | software resource | Open source software for automated and manual tracing of neurites from light microscopy stacks of images. NCTracer 2.0 is developed for the Windows 7, 64-bit operating system and requires a minimum of 4 GB of RAM. This version does not run on 32-bit computers, Mac or Linux OS. | neuronal circuit, neuron tracing, branch structure, automated tracing |
is related to: Dataset of dendritic spine neck lengths and head sizes is related to: experimental studies reporting connection probabilities and/or unitary PSP amplitudes has parent organization: Northeastern University; Massachusetts; USA |
NINDS NS063494 | PMID:21562803 | nlx_152603 | https://bpb-us-w2.wpmucdn.com/sites.northeastern.edu/dist/9/312/files/2020/09/User-Guide-V-4-0.pdf | SCR_000116 | 2026-08-15 11:21:40 | 2 | ||||||
|
VariantAnnotation Resource Report Resource Website 1+ mentions |
VariantAnnotation (RRID:SCR_000074) | VariantAnnotation | software resource | Software package to annotate variants, compute amino acid coding changes, and predict coding outcomes. | annotation, genetic variant, data import, genetics, high throughput sequencing, snp, sequencing |
is listed by: OMICtools is related to: CRAN has parent organization: Bioconductor has parent organization: Fred Hutchinson Cancer Center |
PMID:24681907 | Free, Available for download, Freely available | OMICS_02073 | SCR_000074 | VariantAnnotation - Annotation of Genetic Variants | 2026-08-15 11:21:41 | 9 | ||||||
|
SOAPfusion Resource Report Resource Website 1+ mentions |
SOAPfusion (RRID:SCR_000079) | SOAPfusion | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 22,2022. An open source software tool for fusion discovery with paired-end RNA-Seq reads. The tool follows a different strategy by finding fusions directly and verifying them, differentiating it from all other existing tools by finding the candidate regions and searching for the fusions afterwards. | software, open source, free, RNA, sequencing, data, computing, research, analysis, rna-seq, candidate regions, bio.tools |
is listed by: OMICtools is listed by: SOAP is listed by: bio.tools is listed by: Debian |
Guangdong Innovative Research Team Program ; General Research Fund of the Hong Kong Government |
PMID:24123671 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01358, biotools:soapfusion | https://bio.tools/soapfusion | SCR_000079 | 2026-08-15 11:21:40 | 3 | |||||
|
timecourse Resource Report Resource Website 1+ mentions |
timecourse (RRID:SCR_000077) | timecourse | software resource | Software functions for data analysis and graphical displays for developmental microarray time course data. | microarray, differential expression, time course, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: CRAN has parent organization: Bioconductor has parent organization: University of California at Berkeley; Berkeley; USA |
Free, Available for download, Freely available | OMICS_01980, biotools:timecourse | https://bio.tools/timecourse | SCR_000077 | timecourse - Statistical Analysis for Developmental Microarray Time Course Data | 2026-08-15 11:21:41 | 5 | ||||||
|
Patchwork Resource Report Resource Website 10+ mentions |
Patchwork (RRID:SCR_000072) | Patchwork | software resource | Software tool for analyzing and visualizing allele-specific copy numbers and loss-of-heterozygosity in cancer genomes. The data input is in the format of whole-genome sequencing data which enables characterization of genomic alterations ranging in size from point mutations to entire chromosomes. High quality results are obtained even if samples have low coverage, ~4x, low tumor cell content or are aneuploid. Patchwork takes BAM files as input whereas PatchworkCG takes input from CompleteGenomics files. TAPS performs the same analysis as Patchwork but for microarray data. | genome, allele, copy number, bam, unix, r, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Uppsala University; Uppsala; Sweden |
Cancer, Tumor | PMID:23531354 | Free, Available for download, Freely available | biotools:patchwork, OMICS_02118 | https://bio.tools/patchwork | SCR_000072 | 2026-08-15 11:21:40 | 10 | |||||
|
Brain Trauma Foundation Resource Report Resource Website 1+ mentions |
Brain Trauma Foundation (RRID:SCR_000108) | BTF | organization | The Brain Trauma Foundation (BTF) is a national non-profit organization dedicated to improving the outcome of traumatic brain injury (TBI) patients worldwide by developing best practices guidelines, quality improvement programs, conducting clinical research, and educating medical professionals and consumers. Our efforts also focus on public education aimed at increasing awareness and understanding of the symptoms of a concussion. Our goal is to better educate coaches, nurses, athletes, parents and all citizens about the importance of recognizing concussions and taking the appropriate steps to ensure people receive appropriate care. Also by educating healthcare professionals on the immediate care for coma patients, we estimate that thousands of lives could be saved each year in the U.S., millions worldwide, and more would be spared life-long disabilities. Research has proven that all brain damage does not occur at the moment of impact but rather evolves over the ensuing hours and days after the initial injury, due to brain swelling and inadequate oxygen and blood flow to the injured brain. In most cases, this secondary damage can be controlled by applying scientific, evidence-based diagnostic and treatment Guidelines, which BTF has developed with medical organizations and physicians with expertise in TBI. BTF offers updated continuing education activities for all levels of health care professionals caring for TBI patients. The online activities include recorded presentations, live web-based lectures, and interactive learning modules based on the latest scientific-evidence. Also available on the BTF Learning Portal is an online version of the EMS course developed in coordination with National Highway Traffic Safety Administration. The Brain Trauma Foundation leads the way in cutting-edge clinical research on Traumatic Brain Injury (TBI). Improving diagnosis and treatment of TBI requires a focus on clinical research. Our mission is to improve the outcome of TBI patients worldwide. BTF's research spans the spectrum from concussion to coma. BTF is conducting innovative research into the cause diagnosis of concussion. Also, BTF develops Best TBI Practice Guidelines, which when followed can significantly improve a patient's outcome. The Foundation is currently conducting studies and leading consortiums of investigators from multiple universities and disciplines in many TBI research areas that will have immediate impact on patient outcomes. | traumatic brain injury, coma, concussion, diagnostics, best practices, research, one mind tbi | ISNI: 0000 0001 2172 2553, grid.417506.1, nlx_143730, Wikidata: Q4955793 | https://ror.org/02gxtdy09 | SCR_000108 | 2026-08-15 11:21:40 | 1 | |||||||||
|
MNI Podcasts Resource Report Resource Website 1+ mentions |
MNI Podcasts (RRID:SCR_000021) | MNI Podcasts | data or information resource, podcast, narrative resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16,2023. Collection of podcasts which features experts of the Montreal Neurological Institute and Hospital talking about their research, along with important issues and current events regarding it. | neurology, podcast, montreal neurological institute, montreal neurological institute and hospital, current events, research news |
is used by: NIF Data Federation is related to: Integrated Podcasts has parent organization: McGill University; Montreal; Canada |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_91897 | https://www.youtube.com/user/MontrealNeuro | SCR_000021 | Montreal Neurological Institute Podcasts | 2026-08-15 11:21:39 | 1 | ||||||
|
PAMGO Resource Report Resource Website 1+ mentions |
PAMGO (RRID:SCR_000022) | PAMGO | ontology, data or information resource, controlled vocabulary | THIS RESOURCE IS NO LONGER IN SERVICE, documented on June 10, 2016. A consortium that created universal descriptors to describe functionally similar gene products and their attributes across all organisms. In 2004, the PAMGO interest group joined the GO consortium to extend the GO to include terms describing various processes related to microbe-host interactions. The organization uses a controlled vocabulary to set a process in place to describe plant associated microbes and their interactions with their plant-hosts. These higher order terms can describe gene products of all types of symbionts (e.g. parasites, commensals, and mutualists), including prokaryotes and eukaryotes that associate with plant or animal hosts. This initiative is a multi-institutional collaborative effort to pool information and research in: the bacteria Dickeya dadantii, Pseudomonas syringae pv tomato and Agrobacterium tumefaciens, the fungus Magnaporthe grisea, the oomycetes Phytophthora sojae and Phytophthora ramorum, and the nematode Meloidogyne hapla. | ontology, plant ontology, microbe-host, controlled vocabulary, symbiosis, parasite, mutualist, commensal |
is affiliated with: Cornell University; New York; USA is affiliated with: North Carolina State University; North Carolina; USA is affiliated with: University of Wisconsin-Madison; Wisconsin; USA is affiliated with: Virginia Bioinformatics Institute has parent organization: Virginia Polytechnic Institute and State University; Virginia; USA |
NSF 2005-35600-16370; NSF EF-0523736 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_92278 | SCR_000022 | Plant-Associated Microbe Gene Ontology, Plant Associated Microbe Gene Ontology, PAMGO - Plant-Associated Microbe Gene Ontology | 2026-08-15 11:21:39 | 5 | ||||||
|
Tablet Resource Report Resource Website 1+ mentions |
Tablet (RRID:SCR_000017) | Tablet | software resource | A lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments. | next generation sequence, assembly, alignment |
is listed by: OMICtools has parent organization: James Hutton Institute; Scotland; United Kingdom |
PMID:22445902 | Free, Available for download, Freely available | OMICS_00896 | SCR_000017 | Tablet - Next Generation Sequence Assembly Visualization | 2026-08-15 11:21:39 | 8 | ||||||
|
AutoPrime Resource Report Resource Website 1+ mentions |
AutoPrime (RRID:SCR_000097) | AutoPrime | data access protocol, software resource, web service | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16,2023. Server to rapidly design primers for real-time PCR measurement of eukaryotic expression. | primer, real-time pcr, primer design |
is listed by: OMICtools has parent organization: German Cancer Research Center |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02333 | SCR_000097 | 2026-08-15 11:21:40 | 7 | ||||||||
|
International Union of Basic and Clinical Pharmacology Resource Report Resource Website 1+ mentions |
International Union of Basic and Clinical Pharmacology (RRID:SCR_000135) | IUPHAR | nonprofit organization | Voluntary, non-governmental, non-profit pharmacologist association promoting international cooperation, sponsoring international and regional activities, encouraging free exchange of scientists and ideas, developing public awareness, establishing advisory committees. Has official relations with the World Health Organization (WHO). Helps pharmacologists to participate with other branches of science in international activities, either directly or under ICSU, WHO and UNESCO. Member of the International Council for Science (ICSU) and participates in the work of its scientific committees. Has its own publishing program. Pharmacology International, is published every June and December. Member Directory is maintained continually, as an online resource. Provides IUPHAR Receptor Database, major on-line repository of characterization data for receptors and drugs, and the IUPHAR Ion Channels Database. Official Reports from The IUPHAR Committee on Receptor Nomenclature and Drug Classification are published in Pharmacological Reviews. IUPHAR World Congresses of Pharmacology are held every few years. | gold standard, pharmacologist, association, international, receptor, nomenclature, drug, classification, data, repository |
is parent organization of: NC-IUPHAR is parent organization of: Endogenous GPCR List works with: CellPhoneDB |
Crossref funder ID: 100009703, nlx_47304, grid.479924.5 | https://ror.org/0125syc65 | SCR_000135 | International Union of Pharmacology | 2026-08-15 11:21:41 | 6 | |||||||
|
Neuron Registry Curator Interface Resource Report Resource Website 1+ mentions |
Neuron Registry Curator Interface (RRID:SCR_000094) | NRCI | data or information resource, storage service resource, service resource, data repository | Repository of neuron types characterized by machine-readable part-relation-value triple-based neuron properties. A Curator Interface facilitates the direct knowledge transfer of information from the participating neuroscientist for entry into the Neuron Registry. | neuron, registry, neuron property, data repository, knowledge environment, database, registry, neuroinformatics |
is related to: Neuron Registry Annotated Corpus is related to: Program on Ontologies of Neural Structures has parent organization: George Mason University; Virginia; USA has parent organization: International Neuroinformatics Coordinating Facility |
International Neuroinformatics Coordinating Facility ; under the Program on Ontologies of Neural Structures PONS |
Restricted | nif-0000-00540 | http://incfnrci.appspot.com | SCR_000094 | INCF Neuron Registry | 2026-08-15 11:21:40 | 2 | |||||
|
R Manuals Resource Report Resource Website 1+ mentions |
R Manuals (RRID:SCR_000036) | R Manuals | training material, data or information resource, narrative resource | Manuals for R created on Debian Linux that can be downloaded as PDF files, EPUB files (for R-devel and R-patched), or directly browsed as HTML. They may differ from the manuals for Mac or Windows on platform-specific pages, but most parts will be identical for all platforms. | r, programming language, statistical analysis, graphics | is related to: R Project for Statistical Computing | Free, Available for download, Freely available | OMICS_01764 | SCR_000036 | The R Manuals | 2026-08-15 11:21:39 | 8 | |||||||
|
Patchmaster Resource Report Resource Website 100+ mentions |
Patchmaster (RRID:SCR_000034) | data processing software, software application, software resource, data acquisition software | Multi-channel data acquisition software. Multi-channel stimulation/acquisition software with programmable experiment control and automation, software Lock-in amplifier and Photometry/Imaging extension. PATCHMASTER supports all HEKA amplifiers and data acquisition hardware. | HEKA, HEKA amplifiers and data acquisition hardware support, | is used by: Heka Elektronik: EPC 10 USB Patch Clamp Amplifier | Restricted | SciRes_000168 | SCR_000034 | PATCHMASTER | 2026-08-15 11:21:40 | 155 | ||||||||
|
Dipy Resource Report Resource Website 10+ mentions |
Dipy (RRID:SCR_000029) | DIPY | software toolkit, data processing software, software application, data analysis software, software resource | Software Python package for analyzing diffusion data. Software library for analysis of diffusion MRI data. | MRI, magnetic resonance, diffusion data analysis, diffusion MRI data, diffusion MRI data analysis, |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian has parent organization: Neuroimaging in Python has parent organization: University of Cambridge; Cambridge; United Kingdom |
PMID:24600385 | Free, Available for download, Freely available | nlx_155745 | https://sources.debian.org/src/python-dipy/, http://www.nitrc.org/projects/dipy, http://elef.soic.indiana.edu/, https://github.com/nipy/dipy_web, | http://nipy.org/dipy/ | SCR_000029 | Diffusion Imaging In Python, NIPY Diffusion Imaging Analysis | 2026-08-15 11:21:40 | 16 | ||||
|
Epilepsy Foundation Resource Report Resource Website 1+ mentions |
Epilepsy Foundation (RRID:SCR_000026) | data or information resource, portal, topical portal | The Epilepsy Foundation of America is the national voluntary agency dedicated solely to the welfare of the almost 3 million people with epilepsy in the U.S. and their families. The organization works to ensure that people with seizures are able to participate in all life experiences; to improve how people with epilepsy are perceived, accepted and valued in society; and to promote research for a cure. :Typical of the Foundations national programs are its Jeanne A. Carpenter Epilepsy Legal Defense Fund, the H.O.P.E. (Helping Other People with Epilepsy) Mentoring Program, a Public Policy Institute, Seniors and Womens Health Initiatives, the Kids Speak Up advocacy program, a school personnel training program, outreach to youth and to the Hispanic community, employment programs and a research grants program. Services commonly provided in local communities are information and referral, counseling, patient and family advocacy, school and community education, support groups and camps for children. Its Web site offers the most comprehensive, medically approved consumer information about epilepsy and seizures on the Internet and is the trusted source for millions of people who seek reliable information about epilepsy. : Each year the Foundation also invites research investigators to apply for grants and fellowships to test new ideas and follow new research leads. The applications, more than a hundred in an average year, are ranked according to merit by a blue ribbon panel of research scientists, and funded according to available resources. Additionally, the Epilepsy Foundation offers a series of training fellowships in basic, clinical and behavioral science to scientists at the start of their careers. These fellowships, awarded to young people at the nation's leading research institutes, have in many cases been the first steps on a lifetime commitment to solving the medical and scientific puzzle of why epilepsy develops and how it can be treated or prevented. Specifically, the Gowers Fellowship is awarded annually to a physician/scientist who is embarking on a career in academic clinical medicine and who wishes to undertake a specific project in epilepsy research. Sponsors: The Epilepsy Foundation is funded primarily through individual donations from the general public and receives restricted grant support from the federal government, foundations and private industry. | education, epilepsy, fellowship, funding, cure, health, mentoring, patient, research, seizure, service, support, treatment, welfare | nif-0000-10220 | SCR_000026 | Epilepsy | 2026-08-15 11:21:39 | 1 | ||||||||||
|
Multiple Sclerosis Discovery Forum Resource Report Resource Website 1+ mentions |
Multiple Sclerosis Discovery Forum (RRID:SCR_000027) | MSDF | data or information resource, topical portal, disease-related portal, portal | Portal that aims to inspire connections, clinical advances and accelerate progress toward multiple sclerosis cures. MSDF updates its site with news and information about topics relevant to multiple sclerosis and hosts discussions about controversial subjects with the goal of spreading information and enabling collaboration between researchers. MSDF provides access to drug development pipelines, tissue repositories, the MS gene, animal models, and clinical trials. | collaboration tool, multiple sclerosis, multiple sclerosis cures, |
lists: MSDF Drug Development Pipeline lists: Coriell Cell Repositories lists: Harvard Brain Tissue Resource Center lists: NICHD Brain and Tissue Bank for Developmental Disorders lists: Accelerated Cure Project MS Repository lists: Human Brain and Spinal Fluid Resource Center lists: Bioserve Global BioRepository lists: UM Brain Endowment Bank lists: MSGene lists: Human Brain Tissue Bank lists: Maritime Brain Tissue Bank lists: MRC London Neurodegenerative Diseases Brain Bank lists: Multiple Sclerosis Research Australia Brain Bank lists: Netherlands Brain Bank lists: NeuroBioTec lists: Newcastle Brain Tissue Resource lists: ProteoGenex lists: Sera Laboratories International lists: National Disease Research Interchange lists: Multiple Sclerosis Research Australia Brain Bank is related to: MSDF Drug Development Pipeline is related to: Coriell Cell Repositories is related to: Harvard Brain Tissue Resource Center is related to: NICHD Brain and Tissue Bank for Developmental Disorders is related to: Accelerated Cure Project MS Repository is related to: Human Brain and Spinal Fluid Resource Center is related to: UM Brain Endowment Bank is related to: MSGene is related to: Human Brain Tissue Bank is related to: Maritime Brain Tissue Bank is related to: MRC London Neurodegenerative Diseases Brain Bank is related to: Netherlands Brain Bank is related to: NeuroBioTec is related to: Newcastle Brain Tissue Resource is related to: ProteoGenex is related to: Sera Laboratories International has parent organization: Accelerated Cure Project for Multiple Sclerosis is parent organization of: MSDF Drug Development Pipeline |
Multiple Sclerosis | EMD Serono ; National Multiple Sclerosis Society ; Genzyme |
Free, Public | nlx_156702 | SCR_000027 | MS Discovery Forum | 2026-08-15 11:21:39 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
