Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
MEDLINE Resource Report Resource Website 10000+ mentions |
MEDLINE (RRID:SCR_002185) | MEDLINE | data or information resource, bibliography, database | A premier bibliographic database that contains over 18 million references to journal articles in life sciences with a concentration on biomedicine. A distinctive feature is that the records are indexed with NLM Medical Subject Headings (MeSH). PubMed provides free access to MEDLINE and links to full text articles when possible. The great majority of journals are selected for MEDLINE based on the recommendation of the Literature Selection Technical Review Committee (LSTRC), an NIH-chartered advisory committee of external experts analogous to the committees that review NIH grant applications. Some additional journals and newsletters are selected based on NLM-initiated reviews, e.g., history of medicine, health services research, AIDS, toxicology and environmental health, molecular biology, and complementary medicine, that are special priorities for NLM or other NIH components. These reviews generally also involve consultation with an array of NIH and outside experts or, in some cases, external organizations with which NLM has special collaborative arrangements. MEDLINE is the primary component of PubMed, part of the Entrez series of databases provided by the NLM National Center for Biotechnology Information (NCBI). MEDLINE may also be searched via the NLM Gateway. Time coverage: generally 1946 to the present, with some older material. Source: Currently, citations from approximately 5,516 worldwide journals in 39 languages; 60 languages for older journals. Citations for MEDLINE are created by the NLM, international partners, and collaborating organizations. | software, biomedicine, gold standard |
is used by: CoPub is used by: DisGeNET is used by: Molecular Imaging and Contrast Agent Database is listed by: 3DVC is related to: KLEIO is related to: FACTA+. is related to: MeSH is related to: XplorMed is related to: MeSH is related to: MuGeX is related to: EBIMed is related to: MEDIE is related to: GREC Corpus is related to: GENIA Project: Mining literature for knowledge in molecular biology is related to: PubMed is related to: Automated recognition of brain region mentions in neuroscience literature. is related to: PubMed is related to: PIE the search is related to: Coremine Medical is related to: Whatizit is related to: Cochrane Central Register of Controlled Trials has parent organization: National Library of Medicine |
nlx_53277 | SCR_002185 | 2026-08-15 11:22:09 | 52571 | |||||||||
|
RankAggreg Resource Report Resource Website 10+ mentions |
RankAggreg (RRID:SCR_002225) | software resource | Software package that performs aggregation of ordered lists based on the ranks using several different algorithms: Borda count, Cross-Entropy Monte Carlo algorithm, Genetic algorithm, and a brute force algorithm. | standalone software, mac os x, unix/linux, windows, r |
is listed by: OMICtools has parent organization: CRAN |
PMID:19228411 | GNU Lesser General Public License, v2, v2.1, v3 | OMICS_03526 | SCR_002225 | RankAggreg: Weighted rank aggregation | 2026-08-15 11:22:10 | 48 | |||||||
|
flowMerge Resource Report Resource Website 1+ mentions |
flowMerge (RRID:SCR_002224) | software resource | Software for merging of mixture components for model-based automated gating of flow cytometry data using the flowClust framework. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:20049161 | Free, Available for download, Freely available | OMICS_05605 | SCR_002224 | flowMerge - Cluster Merging for Flow Cytometry Data | 2026-08-15 11:22:08 | 2 | |||||||
|
Mini Analysis Program Resource Report Resource Website 1000+ mentions |
Mini Analysis Program (RRID:SCR_002184) | Mini Analysis | data processing software, software application, data analysis software, software resource | Software tool that detects peaks of any type, any shape, any direction, and any size for neuroscientists who are studying spontaneous activities. Allows detection of virtually any kind of peaks including spontaneous miniature synaptic currents and potentials, action potential spikes, calcium imaging peaks, amperometric peaks, ECG peaks etc. It includes the complex and multiple peak detection algorithm. Has post-detection analyses including essential plots and statistical parameters. Group Analysis provides specialized and detailed analysis options for action potentials, decay fitting, fEPSP/population spikes, amperometry, etc., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Synaptosoft Inc., analysis, peak, spontaneous, activity, synaptic, current, potential, spike, calcium, image, amperometric, ECG, plot, statistical, parameter | THIS RESOURCE IS NO LONGER IN SERVICE | SciRes_000143, SCR_014441 | SCR_002184 | Mini Analysis, MiniAnalysis | 2026-08-15 11:22:08 | 1147 | ||||||||
|
PROVEAN Resource Report Resource Website 1000+ mentions |
PROVEAN (RRID:SCR_002182) | PROVEAN | production service resource, data analysis service, software resource, service resource, analysis service resource | A software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein. | amino acid substitution, indel, function, protein, amino acid, substitution, protein variant, genome variant, next-generation sequencing, insertion, deletion |
is listed by: OMICtools has parent organization: J. Craig Venter Institute |
NIH ; NHGRI 5R01HG004701-04 |
PMID:23056405 | Free, Available for download, Freely available | OMICS_01849 | SCR_002182 | Protein Variation Effect Analyzer | 2026-08-15 11:22:09 | 2380 | |||||
|
VAAST Resource Report Resource Website 10+ mentions |
VAAST (RRID:SCR_002179) | VAAST, VAAST 2 | standalone software, data processing software, software application, data analysis software, software resource, sequence analysis software | A probabilistic search tool for identifying damaged genes and their disease-causing variants in personal genome sequences. VAAST combines elements of phylogenetic conservation, amino acid substitution, and aggregative approaches to variant prioritization into a single unified likelihood-framework that allows users to accurately identify damaged genes and deleterious variants. The software can score both coding (SNV, indel and splice site) and non-coding variants (SNV), evaluating the cumulative impact of both types of variants simultaneously. It can identify rare variants causing rare genetic diseases and can also use both rare and common variants to identify genes responsible for common diseases. | sequence analysis software, genetic, variant classifier, amino acid substitution, disease, genome interpretation, variant prioritization, disease gene prioritization, genomic variation, bio.tools |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: Opal Research has parent organization: Yandell Lab Portal |
PMID:23836555 PMID:21700766 |
Free, Freely available | nlx_154686, SciRes_000138, biotools:vaast, OMICS_02134 | https://bio.tools/vaast | SCR_002179 | Variant Annotation Analysis and Search Tool, Variant Annotation Analysis & Search Tool | 2026-08-15 11:22:13 | 32 | |||||
|
Autosomal Recessive Polycystic Kidney Disease Mutation Database Resource Report Resource Website 10+ mentions |
Autosomal Recessive Polycystic Kidney Disease Mutation Database (RRID:SCR_002290) | database, data repository, storage service resource, data or information resource, service resource | Catalog of all changes detected in PKHD1 (Polycystic Kidney and Hepatic Disease 1) in a locus specific database. Investigators are invited to submit their novel data to this database. These data should be meaningful for clinical practice as well as of relevance for the reader interested in molecular aspects of polycystic kidney disease (PKD). There are also some links and information for ARPKD patients and their parents. Autosomal recessive polycystic kidney disease (ARPKD/PKHD1) is an important cause of renal-related and liver-related morbidity and mortality in childhood. This study reports mutation screening in 90 ARPKD patients and identifies mutations in 110 alleles making up a detection rate of 61%. Thirty-four of the detected mutations have not been reported previously. Two underlying mutations in 40 patients and one mutation in 30 cases are disclosed, and no mutation was detected on the remaining chromosomes. Mutations were found to be scattered throughout the gene without evidence of clustering at specific sites. PKHD1 mutation analysis is a powerful tool to establish the molecular cause of ARPKD in a given family. Direct identification of mutations allows an unequivocal diagnosis and accurate genetic counseling even in families displaying diagnostic challenges. | clinical, gene, genetic, mutation, protein, recessive, renal | has parent organization: RWTH Aachen University; Aachen; Germany | Autosomal recessive polycystic kidney disease, Polycystic kidney disease | PMID:16199545 PMID:11919560 |
Permission required, Terms of use | nif-0000-21038 | http://www.humgen.rwth-aachen.de/index.asp?subform=database.html&nav=database_nav.html | SCR_002290 | Mutation Database Autosomal Recessive Polycystic Kidney Disease (ARPKD/PKHD1) | 2026-08-15 11:22:14 | 14 | |||||
|
Community Structure-Activity Resource Resource Report Resource Website 10+ mentions |
Community Structure-Activity Resource (RRID:SCR_002206) | CSAR | data repository, storage service resource, data or information resource, data set, service resource | Experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes. Some datasets are generated in house while others are collected from the literature or deposited by academic labs, national centers, and the pharmaceutical industry. For the community to improve their approaches, they need exceptional datasets to train scoring functions and develop new docking algorithms. They aim to provide the highest quality data for a diverse collection of proteins and small molecule ligands. They need input from the community in developing target priorities. Ideal targets will have many high-quality crystal structures (apo and 10-20 bound to diverse ligands) and affinity data for 25 compounds that range in size, scaffold, and logP. It is best if the ligand set has several congeneric series that span a broad range of affinity, with low nanomolar to mid-micromolar being most desirable. They prefer Kd data over Ki data over IC50 data (no % activity data). They will determine solubility, pKa, logP/logD data for the ligands whenever possible. They have augmented some donated IC50 data by determining Kon/Koff and ITC data. | crystal structure, binding affinity, protein-ligand complex, protein, small molecule, ligand, compound |
is used by: NIF Data Federation is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: University of Michigan; Ann Arbor; USA |
NIGMS | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154720 | SCR_002206 | 2026-08-15 11:22:10 | 16 | |||||||
|
OpenTopography Resource Report Resource Website 10+ mentions |
OpenTopography (RRID:SCR_002204) | OpenTopo | data or information resource, storage service resource, service resource, data repository | Accepts and provides access to high-resolution (meter to sub-meter scale) Earth science-oriented topography data (e.g. LiDAR) and bathymetric data, and related tools and resources. The OpenTopography Tool Registry provides a community populated clearinghouse of software, utilities, and tools oriented towards high-resolution topography data (e.g. collected with LiDAR technology) handling, processing, and analysis. Tools registered range from source code to full-featured software applications. Contributions to the registry via the Contribute a Tool page are welcome. OpenTopography also hosts a dataset catalog to which users can register datasets hosted elsewhere; these entries are discoverable by users alongside OpenTopography hosted datasets. Lidar point cloud data are available in LAS, LAZ and ASCII formats. Raster datasets and derived products can be downloaded in Arc ASCII, IMG, and GeoTIFF formats. Derived products and visualizations are available in Google Earth KML format. The OpenTopography user community and advisory committee provides feedback to define the scope of collaborations on data hosting and cyberinfrastructure development | topography, topographical surveying, cloud, earth sciences, aerial photography, topographic map, geography, bathymetric map, geological mapping, geographic information system, bathymetry |
is listed by: CINERGI is listed by: re3data.org is listed by: DataCite has parent organization: San Diego Supercomputer Center has parent organization: University of California; California; USA |
NSF 1948997; NSF 1948994; NSF 1948857 |
Free, Available for download, Freely available | nlx_154717, r3d100010655 | https://api.datacite.org/dois?prefix=10.5069, https://doi.org/10.17616/R3J616 | SCR_002204 | , OpenTopography Facility, Open Topography, NSF OpenTopography Facility | 2026-08-15 11:22:13 | 22 | |||||
|
Fly EM Resource Report Resource Website 1+ mentions |
Fly EM (RRID:SCR_002242) | Fly EM, FlyEM | topical portal, image analysis software, data processing software, portal, data or information resource, software application, data set, software resource, segmentation software | A project producing datasets, software, and algorithms that is developing the technology to produce connectomes at the electron microscopic level of behaviorally-relevant neural circuits as well as the entire Drosophila nervous system. This technology will enable them to create a map of every neuron and synapse in the Drosophila nervous system, using novel approaches to electron microscopy (EM) as the foundation. In the same way that the fly genome paved the way for larger projects, including sequencing the human genome, Fly EM may ultimately contribute to our understanding of the human brain by establishing a fly "connectome" a map that shows how all neurons in the fly brain are connected to each other. They began their entry into EM reconstruction with the fly's adult visual system, where much is known about cell types from previous EM and histological studies, as well as ongoing studies in the Fly Light Project. In addition to establishing and publishing a fly connectome, Fly EM will make technology and methodology available that is needed to perform large-scale EM reconstructions. Fly EM will generally pursue an open policy with their datasets, software, and algorithms after relevant publications. When an EM reconstruction is published, the derived connectome and reconstructed neuronal skeletons will be made available online. The raw data and annotatations will be made available upon request as logistics dictate. To encourage further collaboration and scientific discovery, a small fraction of their raw data and corresponding segmentation will be made available independent of publication. Their goal is to enable others who wish to approach the many algorithmic challenges, but who do not have access to an EM facility, to have the data they need to support methods development, as well as their results to use as a benchmark. Fly EM emphasizes publication of supporting techniques and software approaches before major EM reconstruction releases to encourage rapid feedback from the community and adoption of their strategies. FlyEM maintains much of its software in the open-source repository GitHub:http://janelia-flyem.github.com. They will provide information on official release versions of these packages on git-hub when it reaches reasonable maturity. | neuron, synapse, nervous system, electron microscopy, visual system, connectome, reconstruction, adult, optic lobe, medulla, lobula | has parent organization: Janelia Research | PMID:30033368 | Janelia Farm license, A 3-clause BSD license | nlx_155555 | SCR_002242 | Fly EM Project | 2026-08-15 11:22:13 | 3 | ||||||
|
RDoC Resource Report Resource Website 100+ mentions |
RDoC (RRID:SCR_002244) | RDoC | narrative resource, data or information resource, knowledge environment, standard specification | NIMH Strategic Plan developing, for research purposes, new ways of classifying psychopathology based on dimensions of observable behavior and neurobiological measures. In brief, the effort is to define basic dimensions of functioning (such as fear circuitry or working memory) to be studied across multiple units of analysis, from genes to neural circuits to behaviors, cutting across disorders as traditionally defined. The intent is to translate rapid progress in basic neurobiological and behavioral research to an improved integrative understanding of psychopathology and the development of new and/or optimally matched treatments for mental disorders. The various domains of functioning, and their constituent elements, are being defined by an ongoing series of consensus workshops; input from the research community and other interested stakeholders is encouraged. | cognitive system, neural circuit, behavior, cognition, comorbidity, psychiatric diagnosis |
is related to: RDoCdb has parent organization: National Institute of Mental Health |
Mental disease | NIMH | PMID:24016027 PMID:23902986 PMID:22577302 PMID:21198381 PMID:20939653 PMID:20929969 PMID:20595427 |
Free, Freely available | nlx_155557 | SCR_002244 | Research Domain Criteria | 2026-08-15 11:22:10 | 167 | ||||
|
Cognitive Paradigm Ontology Resource Report Resource Website 1+ mentions |
Cognitive Paradigm Ontology (RRID:SCR_002235) | CogPO | ontology, data or information resource, controlled vocabulary | Ontology used to describe the experimental conditions within cognitive and behavioral experiments, primarily in humans for application and use in the functional neuroimaging community. CogPO has been developed through the integration of the Functional Imaging Biomedical Informatics Research Network (FBIRN) Human Imaging Database (HID) and the BrainMap Database. The design of CogPO concentrates on what can be observed directly: categorization of each paradigm in terms of (1) the stimulus presented to the subjects, (2) the requested instructions, and (3) the returned response. | functional neuroimaging, owl, cognition, behavior |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: BioPortal is related to: Human Imaging Database has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA has parent organization: Mind Research Network |
NIMH 1R01MH084812-01A1 | Free, Freely available | nlx_155537 | http://www.nitrc.org/projects/cogpo | SCR_002235 | 2026-08-15 11:22:10 | 9 | ||||||
|
CleanLine Resource Report Resource Website 100+ mentions |
CleanLine (RRID:SCR_002233) | CleanLine | software resource | An EEGLAB plugin which adaptively estimates and removes sinusoidal artifacts from independent component analysis (ICA) components or scalp channels using a frequency-domain (multi-taper) regression technique with a Thompson F-statistic for identifying significant sinusoidal artifacts. This approach has been advocated by Partha Mitra and Hemant Bokil (Observed Brain Dynamics, Chapter 7.3.4., 2007) and CleanLine utilizes modified routines from the Mitra Lab's Chronux Toolbox (www.chronux.org). Sinusoidal noise can be a prominent artifact in recorded electrophysiological data. This can stem from AC power line fluctuations (e.g. 50/60 Hz line noise + harmonics), power suppliers (e.g. in medical equipment), fluorescent lights, etc. Notch filtering is generally undesirable due to creation of band-holes, and significant distortion of frequencies around the notch frequency (as well as phase distortion at other frequencies and Gibbs rippling in the time-domain). | eeg, meg, electrocorticography, spectral analysis, temporal transformation | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License | nlx_155529 | SCR_002233 | 2026-08-15 11:22:08 | 140 | ||||||||
|
BCO-DMO Resource Report Resource Website 10+ mentions |
BCO-DMO (RRID:SCR_002191) | BCO-DMO | data repository, storage service resource, data or information resource, data set, service resource | Accepts and provides access to marine biogeochemical and ecological data sets from NSF-funded research programs. BCO-DMO is also the data repository for the US GLOBEC and JGOFS programs. | marine, biogeochemical, ecological, ocean, oceanographic, biology, polar |
is listed by: CINERGI has parent organization: Woods Hole Oceanographic Institution; Massachusetts; USA |
NSF | The community can contribute to this resource, For use by the academic and scientific community, Acknowledgement required, See terms of use, Non-commercial, Commercial with written permission | nlx_154701 | SCR_002191 | Biological and Chemical Oceanography Data Management Office, Biological & Chemical Oceanography Data Management Office | 2026-08-15 11:22:09 | 29 | ||||||
|
GRBio Resource Report Resource Website 10+ mentions |
GRBio (RRID:SCR_002228) | GRBio | database, web service, data or information resource, data access protocol, software resource, people resource | Database of biological collections in natural history museums, herbaria, and other biorepositories resulting from a merger of Index Herbariorum (IH), Biodiversity Collections Index (BCI) and biorepositories.org. It contains more than 14,000 records for biorepository institutions, their collections, and staff members. Their two main goals are to improve access to information about biorepositories, the collections and specimens they house, and the researchers and collection managers who work there; and to facilitate electronic linkages to this information through web services that will rely on unique identifiers assigned to biorepositories and collections. The Consortium for the Barcode of Life (CBOL) has developed and will manage GRBio in collaboration with IH and BCI and in consultation with GBIF and NCBI. GRBio includes four categories of data records that provide information on: * Institutional repositories such as museums, herbaria, botanical gardens, zoos, biomedical research institutes and culture centers; * Institutional collection records such as the bird, algal or insect collections within an institutional repository; * Personal collections such as field samples held by a researcher before they have been accessioned into an institutional collection, or privately owned specimens held by non-researchers; and * Staff members at institutional repositories GRBio operates as a moderated community-curated resource. The community is invited to check and update their records and to register institutions, collections and staff members that have not already been registered. GRBio offers registration of institutional collections, "personal" research collections that have not yet been accessioned into an institutional repository, and privately owned collections. | biospecimen repository, biodiversity, biorepository, specimen, institution, registry, biological collection, natural history museum, herbaria, darwin core identifier, taxonomy |
lists: Culture Collection of Algae at the University of Cologne lists: Universidade Federal do Ceara, Centro Ciencias Agrarias lists: Central College of Bangalore lists: Culture Collection of Fungi lists: Carter County Museum is related to: Culture Collection of Algae at the University of Cologne is related to: Universidade Federal do Ceara, Centro Ciencias Agrarias is related to: Culture Collection of Fungi is related to: Carter County Museum |
Public, The community can contribute to this resource | nlx_155523 | SCR_002228 | Global Registry of Biorepositories | 2026-08-15 11:22:08 | 11 | |||||||
|
JGI Genome Portal Resource Report Resource Website 500+ mentions |
JGI Genome Portal (RRID:SCR_002383) | organization portal, data or information resource, department portal, portal | Portal providing access to all JGI genomic databases and analytical tools, sequencing projects and their status, search for and download assemblies and annotations of sequenced genomes, and interactively explore those genomes and compare them with other sequenced microbes, fungi, plants or metagenomes using specialized systems tailored to each particular class of organisms. The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web. | gene, computation, genome, genomics, model organism, assembly, annotation, sequenced genome, metagenome, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: DOE Joint Genome Institute is parent organization of: Takifugu rubripes Genome |
Department of Energy | PMID:24225321 PMID:22110030 |
nif-0000-21230, SCR_004706, OMICS_01654, biotools:jgi_genome_portal, nlx_69965 | http://genome.jgi-psf.org, https://bio.tools/jgi_genome_portal | http://genome.jgi-psf.org/ | SCR_002383 | JGI Genome Portal, DOE Joint Genome Institute Genome Portal | 2026-08-15 11:22:13 | 869 | |||||
|
BEAT Resource Report Resource Website 100+ mentions |
BEAT (RRID:SCR_002387) | software resource | Software that implements all bioinformatics steps required for the quantitative, high-resolution analysis of DNA methylation patterns from bisulfite sequencing data. | standalone software, unix/linux, mac os x, windows, r, dna methylation, epigenetics, genetics, methyl-seq |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:24618468 | GNU Lesser General Public License, v3 or greater | OMICS_03425 | SCR_002387 | BS-Seq Epimutation Analysis Toolkit, BEAT - BS-Seq Epimutation Analysis Toolkit | 2026-08-15 11:22:15 | 130 | |||||||
|
Marine Biological Laboratory Resource Report Resource Website 500+ mentions |
Marine Biological Laboratory (RRID:SCR_002410) | MBL | data or information resource, portal, department portal, organization portal | Private non-profit laboratory at the University of Chicago that works on scientific discovery of biodiversity, understanding the environment and exploring the human condition through education and research. | marine sciences, chicago, marine biology research, environmental science |
is listed by: One Mind Biospecimen Bank Listing is affiliated with: University of Chicago; Illinois; USA is affiliated with: Woods Hole Oceanographic Institution; Massachusetts; USA is parent organization of: BioCurrents Research Center is parent organization of: GenProtEC is parent organization of: MultiFun is parent organization of: VAMPS |
Free, Freely available | nif-0000-00389, ISNI: 000000012169920X, grid.144532.5, Wikidata: Q500632 | https://ror.org/046dg4z72 | SCR_002410 | Marine Biological Laboratory in Woods Hole | 2026-08-15 11:22:15 | 598 | ||||||
|
HistoWeb: Nervous System Resource Report Resource Website 1+ mentions |
HistoWeb: Nervous System (RRID:SCR_002369) | KU Nervous System, HistoWeb Nervous, KU Nervous | data or information resource, training material, d spatial image, atlas, narrative resource | Histology atlas of different parts of the nervous system that corresponds with the laboratory exercises of the Cell & Tissue Biology course of the School of Medicine of the University of Kansas. Succinct explanations of the tissues to guide the first-year medical student in the use of their microscope is provided and subsequently serves as a permanent histology resource for all medical students and physicians. Sections of the brain that are included are: * Spinal Cord * Central Canal * White Matter * Gray Matter * Dorsal Root Ganglion * Cerebellum * Cerebrum * Astrocytes * Nerve * Node of Ranvier * Pacinian Corpuscle | brain, anatomy, histology, microscopic, micrograph | has parent organization: University of Kansas; Kansas; USA | Use of the images in non-profit and educational applications is allowed. Please contact for other inquiries. | nif-0000-21194 | SCR_002369 | KU HistoWeb Nervous System, HistoWeb Nervous System, University of Kansas Nervous System | 2026-08-15 11:22:10 | 4 | |||||||
|
ConSurf Database Resource Report Resource Website 100+ mentions |
ConSurf Database (RRID:SCR_002320) | ConSurfDB | data or information resource, service resource, database | Provides pre-calculated evolutionary conservation profiles for proteins of known structure in the PDB. Enables flexibility in setting the parameters of the calculation, and accepts optional uploads of atomic coordinates, multiple sequence alignments, and phylogenetic trees for use in the calculation of conservation profiles. | PDB, Protein DataBase, evolution, conservation, protein, structure, pre-calculated, profile, FASEB list |
is listed by: bio.tools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: Tel Aviv University; Ramat Aviv; Israel |
Tel Aviv University; Ramat Aviv; Israel | PMID:20478830 PMID:15980475 PMID:12499312 PMID:11243830 |
Free, Freely available | nif-0000-21098, SCR_007609, BioTools:consurf-db, nif-0000-02685 | http://bental.tau.ac.il/new_ConSurfDB/, https://bio.tools/consurf-db | http://consurf-hssp.tau.ac.il | SCR_002320 | , consurf-db, ConSurf-DataBase, ConSurf-DB, ConSurfDB, ConSurf Server Database, ConSurfDataBase, ConSurf- Data Base | 2026-08-15 11:22:14 | 318 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
