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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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glycosciences.de Resource Report Resource Website 10+ mentions |
glycosciences.de (RRID:SCR_002324) | GLYCOSCIENCES.de | data or information resource, portal, database, topical portal | Portal of glycoinformatics resources including databases and bioinformatics tools for glycobiology and glycomics research. Databases include a bibliography, structure, nuclear magnetic resonance (NMR), mass spectroscopy (ms) and a PDB search. | glycoinformatics, glycobiology, glycomics, carbohydrate, 3d structure, data analysis service, modeling, structure, nuclear magnetic resonance, mass spectroscopy, protein, glycan |
lists: LiGraph lists: pdb-data lists: PDB2MultiGif is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: University of Giessen; Hesse; Germany is parent organization of: GlyProt is parent organization of: Distance Mapping is parent organization of: pdb-care is parent organization of: pdb2linucs is parent organization of: GlyVicinity is parent organization of: GlyTorsion is parent organization of: GlySeq is parent organization of: LINUCS is parent organization of: sumo is parent organization of: GlycoFragment is parent organization of: Glyco-CD is parent organization of: GlycoMapsDB is parent organization of: SWEET-DB is parent organization of: CARP |
DFG | PMID:16239495 | Free, Public | nif-0000-21103 | SCR_002324 | Glycosciences | 2026-08-15 11:22:12 | 25 | |||||
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University of Antwerp; Antwerp; Belgium Resource Report Resource Website 1+ mentions |
University of Antwerp; Antwerp; Belgium (RRID:SCR_002444) | university | Public university in Antwerp, Belgium that offers programs in economics, engineering, arts, design sciences, and medicine and health. | public university, design sciences program, belgium |
is related to: EMIF is parent organization of: Alzheimer Disease and Frontotemporal Dementia Mutation Database is parent organization of: Neurofitter is parent organization of: Hereditary Hearing Loss Homepage is parent organization of: STEPS |
Free | ISNI:0000 0001 0790 3681, Wikidata:Q175241, nlx_44049, Crossref funder ID:501100007660, grid.5284.b | https://ror.org/008x57b05 | SCR_002444 | Universiteit Antwerpen, University of Antwerp, UAntwerp | 2026-08-15 11:22:13 | 3 | |||||||
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MisterI Resource Report Resource Website 1+ mentions |
MisterI (RRID:SCR_002317) | Mr. I, Mr I | image processing software, data processing software, software application, software resource, data visualization software | A powerful and modular medical image viewer/editor. It should be particularly useful to Undergraduates, Postdocs and Researchers in Medical Imaging to visualize data and to easily make attractive figures (for papers or presentations). It will also in a near future offer a number of advanced algorithms for medical image processing. Look at the video to get an idea ! http://www.benoitscherrer.com/MisterI/videos.html | c++, mgh/mgz, magnetic resonance, nifti, nrrd, visualization | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Cardware, Http://www.nitrc.org/include/glossary.php#697 | nlx_155666 | SCR_002317 | 2026-08-15 11:22:14 | 1 | ||||||||
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Visible Mouse Project Resource Report Resource Website 1+ mentions |
Visible Mouse Project (RRID:SCR_002393) | Visible Mouse Project | video resource, data or information resource, training material, image collection, narrative resource | Educational resource to introduce users to the anatomy, physiology, histology, and pathology of the laboratory mouse, with an emphasis on the Genetically Engineered Mouse (GEM). It provides access to histological images, scanned at high resolution and browsable through Zoomify, movie loops and animations derived from MRI, correlated MRI and histology. It has CNS data but is focused on the whole body, e.g., physiological data is available for the heart in the form of wave patterns, histology, CNS, pathology, magnetic resonance imaging, neoplasms; animation, virtual histology, mouse, correlated imaging, necropsy, whole mouse. It may be useful to neuroscientists by relating brain anatomy to the rest of the body. There is a movie illustrating necropsy of the mouse. A link to a compendium of histological slices of brain neoplasms is provided under the Image Archive link. There is a CNS link under construction for anatomical system, which presumably will include detailed CT imaging. This site still appears to be under construction. | necropsy, histology, pathology, physiology, pathology, knock out mouse, mri, heart, wave pattern, central nervous system, neoplasm, animation, virtual histology, anatomy, anatomic system, imaging |
has parent organization: University of California at Davis; California; USA is parent organization of: Visible Mouse Anatomy |
NIH ; MMRRC |
For educational non-profit use, Permission is required to link to any material on the site | nif-0000-00119 | SCR_002393 | The Visible Mouse Project | 2026-08-15 11:22:15 | 2 | ||||||
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ClinicalTrials.gov Resource Report Resource Website 10000+ mentions |
ClinicalTrials.gov (RRID:SCR_002309) | ClinicalTrials.gov | database, data repository, storage service resource, clinical trial, data or information resource, service resource, catalog | Registry and results database of federally and privately supported clinical trials conducted in United States and around world. Provides information about purpose of trial, who may participate, locations, and phone numbers for more details. This information should be used in conjunction with advice from health care professionals.Offers information for locating federally and privately supported clinical trials for wide range of diseases and conditions. Research study in human volunteers to answer specific health questions. Interventional trials determine whether experimental treatments or new ways of using known therapies are safe and effective under controlled environments. Observational trials address health issues in large groups of people or populations in natural settings. ClinicalTrials.gov contains trials sponsored by National Institutes of Health, other federal agencies, and private industry. Studies listed in database are conducted in all 50 States and in 178 countries. | clinical trial, intervention, treatment, therapy, observation, drug, adverse event, result, outcome, data set, FASEB list |
is used by: NIF Data Federation is used by: Patients to Trials Consortium is used by: Corengi is used by: Biomarkers of Anti-TNF Treatment Efficacy in Rheumatoid Arthritis - Unresponsive Populations is used by: Limited Access Datasets From NIMH Clinical Trials is used by: Integrated Clinical Trials is used by: Integrated Datasets is used by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases lists: Epidemiology of Diabetes Interventions and Complications lists: Behavior Enhances Drug Reduction of Incontinence lists: Diabetes Prevention Program lists: Diabetes Prevention Program Outcomes Study lists: Folic Acid for Vascular Outcome Reduction in Transplantation lists: Family Investigation of Nephropathy of Diabetes lists: Frequent Hemodialysis Network Daily Trial lists: HALT PKD lists: HEALTHY study lists: RiVuR lists: Study of Nutrition in Acute Pancreatitis lists: TINSAL-T2D lists: Treatment Options for type 2 Diabetes in Adolescents and Youth lists: TOMUS lists: TRIGR lists: CATIE - Alzheimers Disease lists: CATIE - Clinical Antipsychotic Trials in Intervention Effectiveness lists: Gastroparesis Clinical Research Consortium lists: Diabetes Control and Complications Trial lists: Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit lists: Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction lists: Frequent Hemodialysis Network Nocturnal Trial lists: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia lists: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study lists: Complementary and Alternative Medicine for Urological Symptoms lists: Program to Reduce Incontinence by Diet and Exercise lists: TEDDY lists: Diabetes Prevention Type 1 lists: HALT-C Trial lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C lists: Medical Therapy of Prostatic Symptoms is listed by: OMICtools is related to: NIMH Clinical Trials is related to: cthist is related to: Clinical Trials Viewer has parent organization: National Library of Medicine is parent organization of: LinkedCT is parent organization of: Functional Dyspepsia Treatment Trial is parent organization of: High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis is parent organization of: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C is parent organization of: Maryland Genetics of Interstitial Cystitis is parent organization of: Treatment of SSRI-resistant Depression in Adolescents (TORDIA) is parent organization of: Systematic Treatment Enhancement Program for Bipolar Disorder (STEP-BD) is parent organization of: TADS - Treatment for Adolescents with Depression Study is parent organization of: Biomarkers of Anti-TNF Treatment Efficacy in Rheumatoid Arthritis - Unresponsive Populations is parent organization of: Renin Angiotensin System Study |
NIH ; NLM |
PMID:27631620 | Free, Freely available | OMICS_01792, r3d100010211, nif-0000-21091 | https://doi.org/10.17616/R3H887 | SCR_002309 | Clinical Trials Database, ClinicalTrials.gov, Clinicaltrials.gov: A Service Of The National Institutes Of Health, ClinicalTrials, Clinical Trials gov | 2026-08-15 11:22:14 | 54250 | ||||
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CAMERA - Collection of annotation related methods for mass spectrometry data Resource Report Resource Website 1+ mentions |
CAMERA - Collection of annotation related methods for mass spectrometry data (RRID:SCR_002466) | CAMERA | software resource | A Bioconductor package integrating algorithms to extract compound spectra, annotate isotope and adduct peaks, and propose the accurate compound mass even in highly complex data. | standalone software, mac os x, unix/linux, windows, r, spectra, extraction, annotation, liquid chromatography, mass spectrometry, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Bioconductor |
PMID:22111785 | Free, Available for download, Freely available | biotools:camera, OMICS_03366 | https://bio.tools/camera | SCR_002466 | CAMERA - Collection of annotation related methods for mass spectrometry data | 2026-08-15 11:22:12 | 4 | |||||
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Ensembl Resource Report Resource Website 10000+ mentions |
Ensembl (RRID:SCR_002344) | data or information resource, database | Collection of genome databases for vertebrates and other eukaryotic species with DNA and protein sequence search capabilities. Used to automatically annotate genome, integrate this annotation with other available biological data and make data publicly available via web. Ensembl tools include BLAST, BLAT, BioMart and the Variant Effect Predictor (VEP) for all supported species. | collection, genome, dataset, database, vertebrate, eukaryotic, DNA, protein, sequence, search, automaticly, annotate, data, bio.tools, FASEB list |
is used by: NIF Data Federation is used by: Animal QTLdb is used by: ChannelPedia is used by: Blueprint Epigenome is used by: HmtPhenome lists: Ensembl Covid-19 is listed by: OMICtools is listed by: Biositemaps is listed by: re3data.org is listed by: LabWorm is listed by: bio.tools is listed by: Debian is listed by: SoftCite is related to: Ensembl Genomes is related to: GermOnline is related to: CandiSNPer is related to: Human Splicing Finder is related to: NGS-SNP is related to: Sanger Mouse Resources Portal is related to: DECIPHER is related to: Ensembl Genomes is related to: PeptideAtlas is related to: AnimalTFDB is related to: Bgee: dataBase for Gene Expression Evolution is related to: FlyMine is related to: Rat Gene Symbol Tracker is related to: UniParc at the EBI is related to: go-db-perl is related to: UniParc is related to: g:Profiler is related to: RIKEN integrated database of mammals is related to: VBASE2 is related to: p300db is related to: ShinyGO has parent organization: European Bioinformatics Institute has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: Ensembl Metazoa is parent organization of: Ensembl Variation is parent organization of: Pre Ensembl is parent organization of: Variant Effect Predictor is parent organization of: Ensembl Bacteria is parent organization of: Ensembl Plants is parent organization of: Ensembl Fungi is parent organization of: Ensembl Protists is parent organization of: Ensembl Genome Browser works with: Genotate works with: CellPhoneDB works with: Open Regulatory Annotation Database works with: Database of genes related to Repeat Expansion Diseases works with: TarBase |
Wellcome Trust ; EMBL ; European Union ; FP7 ; FP6 ; MRC ; NHGRI ; BBSRC |
PMID:24316576 PMID:23203987 |
nif-0000-21145, OMICS_01647, biotools:ensembl, r3d100010228 | https://bio.tools/ensembl, https://sources.debian.org/src/ensembl/, https://doi.org/10.17616/R39K5B | SCR_002344 | ENSEMBL | 2026-08-15 11:22:15 | 12374 | ||||||
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DBSubLoc - Database of protein Subcellular Localization Resource Report Resource Website 1+ mentions |
DBSubLoc - Database of protein Subcellular Localization (RRID:SCR_002339) | DbSubLoc | database, production service resource, data analysis service, web service, data or information resource, data access protocol, software resource, service resource, analysis service resource | A database of protein subcellular localization containing proteins from primary protein database SWISS-PROT and PIR. By collecting the subcellular localization annotation, these information are classified and categorized by cross references to taxonomies and Gene Ontology database. Annotations were taken from primary protein databases, model organism genome projects and literature texts, and then were analyzed to dig out the subcellular localization features of the proteins. The proteins are also classified into different categories. Based on sequence alignment, nonredundant subsets of the database have been built, which may provide useful information for subcellular localization prediction. The database now contains >60 000 protein sequences including 30 000 protein sequences in the nonredundant data sets. Online download, SOAP server, Blast tools and prediction services are also available. | protein, protein database, protein subcellular localization, blast, prediction, subcellular | has parent organization: National Tsing Hua University; Hsinchu; Taiwan | National Key Foundational Research of China 863-2002AA23/03/; National Key Foundational Research of China 2002AA234041; National Key Foundational Research of China 973-2003CB715900; National Key Foundational Research of China NSF-90303017 |
PMID:14681374 | nif-0000-02735 | SCR_002339 | 2026-08-15 11:22:12 | 2 | |||||||
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dbSNP Resource Report Resource Website 5000+ mentions |
dbSNP (RRID:SCR_002338) | dbSNP | database, data repository, storage service resource, data or information resource, service resource | General database of genetic variations maintained by the NCBI. Database as central repository for both single base nucleotide substitutions and short deletion and insertion polymorphisms. Distinguishes report of how to assay SNP from use of that SNP with individuals and populations. This separation simplifies some issues of data representation. However, these initial reports describing how to assay SNP will often be accompanied by SNP experiments measuring allele occurrence in individuals and populations. Community can contribute to this resource. | insertion, polymorphism, short, deletion, single, nucleotide, genetic, variation, genomics, genotype, disease, allele, microsatellite, marker, multinucleotide, heterozygous, sequence, gold standard, bio.tools |
is used by: ExAc is used by: GEMINI is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Ensembl Variation is related to: GWAS Central is related to: TopoSNP is related to: GWAS Central is related to: dbSNP151 has parent organization: NCBI has parent organization: National Human Genome Research Institute works with: Open Regulatory Annotation Database |
NLM | PMID:21154707 | Free, Freely available | nif-0000-02734, biotools:dbsnp, OMICS_00264, r3d100010652 | http://www.ncbi.nlm.nih.gov/projects/SNP/, https://bio.tools/dbsnp, https://doi.org/10.17616/R3XG81 | SCR_002338 | dbSNP: Database for Short Genetic Variations, Entrez SNP - Single Nucleotide Polymorphism, SNV Database, NCBI SNV Database, NCBI Short Genetic Variations Database, NCBI Short Genetic Variations, NCBI Single Nucleotide Polymorphism, Entrez SNP, dbSNP, NCBI Short Genetic Variations (SNV) database | 2026-08-15 11:22:10 | 9088 | ||||
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PolyPhred Resource Report Resource Website 100+ mentions |
PolyPhred (RRID:SCR_002337) | PolyPhred | software resource | Software program that compares fluorescence-based sequences across traces obtained from different individuals to identify heterozygous sites for single nucleotide substitutions. Its functions are integrated with the use of three other programs: Phred (Brent Ewing and Phil Green), Phrap (Phil Green), and Consed (David Gordon and Phil Green). PolyPhred identifies potential heterozygotes using the base calls and peak information provided by Phred and the sequence alignments provided by Phrap. Potential heterozygotes identified by PolyPhred are marked for rapid inspection using the Consed tool. | windows, sequence, nucleotide substitution, heterozygote, polymorphic, genotype, single nucleotide polymorphism, fluorescence, single nucleotide substitution, polymorphism, insertion, deletion, indel, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Washington; Seattle; USA |
PMID:17115056 PMID:16493422 PMID:9207020 |
Free for academic use, Commercial use requires a license | biotools:polyphred, OMICS_01815 | https://bio.tools/polyphred | SCR_002337 | 2026-08-15 11:22:14 | 127 | ||||||
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NRDR Resource Report Resource Website 10+ mentions |
NRDR (RRID:SCR_002458) | topical portal, portal, web application, data or information resource, software resource | Searchable portal for public non-coding RNA databases. The databases are classified by RNA family, information source, information content, and available search mechanisms. | public database portal, non coding rna, non coding rna portal |
is listed by: OMICtools has parent organization: University of Sao Paulo; Sao Paulo; Brazil |
PMID:22336709 | Free, Freely available | OMICS_01702 | http://www.ime.usp.br/~durham/ncrnadatabases/index.php | SCR_002458 | NRDR: Non-coding RNA Databases Resource, Non-coding RNA Databases Resource | 2026-08-15 11:22:12 | 11 | ||||||
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Numerical Fibre Generator Resource Report Resource Website 50+ mentions |
Numerical Fibre Generator (RRID:SCR_002457) | NFG | software resource | A collection of tools that generate numerical fiber structures with the complexity of human white matter and simulate Diffusion-Weighted MR images that would arise from them. Its primary use is to enable the testing of tracking algorithms | analyze, c, console (text based), macos, microsoft, magnetic resonance, posix/unix-like, tractography, windows, dw-mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Brain Research Institute |
Free, Available for download, Freely available | nlx_155832 | http://www.nitrc.org/projects/nfg | SCR_002457 | Numerical Fibre Generator (NFG) | 2026-08-15 11:22:15 | 59 | ||||||
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BioCyc Resource Report Resource Website 1000+ mentions |
BioCyc (RRID:SCR_002298) | data or information resource, database | A collection of Pathway/Genome Databases which describes the genome and metabolic pathways of a single organism. The BioCyc collection of Pathway/Genome Databases (PGDBs) provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms. BioCyc PGDBs are generated by software that predicts the metabolic pathway complements of completely sequenced organisms from their genome sequences. They also include the results of a number of other computational inference procedures applied to these genomes, including predictions of which genes code for missing enzymes in metabolic pathways, and predicted operons. The BioCyc Web site provides a suite of software tools for database searching and visualization, for omics data analysis, and for comparative genomics and comparative pathway questions. The databases within the BioCyc collection are organized into tiers according to the amount of manual review and updating they have received. Tier 1 PGDBs have been created through intensive manual efforts, and receive continuous updating. Tier 2 PGDBs were computationally generated by the PathoLogic program, and have undergone moderate amounts of review and updating. Tier 3 PGDBs were computationally generated by the PathoLogic program, and have undergone no review and updating. There are 967 DBs in Tier 3. The downloadable version of BioCyc that includes the Pathway Tools software provides more speed and power than the BioCyc Web site. | database, pathway/genome databases, PGDB, genome, metabolic pathway, microbiome, FASEB list |
uses: Pathway Tools is used by: PathCase Pathways Database System lists: Pathway Tools lists: EcoCyc lists: MetaCyc lists: HumanCyc: Encyclopedia of Homo sapiens Genes and Metabolism is listed by: LabWorm is listed by: Human Microbiome Project is related to: Pathway Tools is related to: PathCase Pathways Database System is related to: EcoCyc is related to: MetaCyc is related to: HumanCyc: Encyclopedia of Homo sapiens Genes and Metabolism is related to: EcoCyc is related to: Gramene is related to: NCBI BioSystems Database is related to: KOBAS is related to: Tuberculosis Database is related to: Pathway Tools has parent organization: Stanford Research Institute International |
NIGMS GM080746 | PMID:16246909 | Restricted | nif-0000-00369, r3d100011259 | https://doi.org/10.17616/R36G8H | SCR_002298 | BioCyc Database Collection | 2026-08-15 11:22:11 | 1063 | |||||
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NFT Resource Report Resource Website 1+ mentions |
NFT (RRID:SCR_002450) | NFT | software toolkit, image analysis software, data processing software, software application, software resource, segmentation software | A MATLAB Toolbox for generating realistic head models from available data (MRI and/or electrode locations), for computing numerical solutions for the forward problem of electromagnetic source imaging and for single dipole source localization. The NFT includes tools for segmenting scalp, skull, cerebrospinal fluid (CSF) and brain tissues from T1-weighted magnetic resonance (MR) images. The Boundary Element Method (BEM) and Finite Element Method (FEM) are used for the numerical solution of the forward problem. When a subject MR image is not available a template head model can be warped to measured electrode locations to obtain an individualized head model. Toolbox functions may be called either from a graphic user interface compatible with EEGLAB or from the MATLAB command line. | eeg, meg, electrocorticography, eeg modeling, forward - inverse, modeling, matlab, mri, electrode |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Swartz Center for Computational Neuroscience |
PMID:20457183 | Free, Available for download, Freely available | nlx_155823 | http://www.nitrc.org/projects/nft | SCR_002450 | NFT: Neuroelectromag Forward Modeling, Neuroelectromagnetic Forward Modeling Toolbox, Neuroelectromagnetic Forward Head Modeling Toolbox | 2026-08-15 11:22:15 | 1 | |||||
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DPDx: Laboratory Identification of Parasites of Public Health Concern Resource Report Resource Website 1+ mentions |
DPDx: Laboratory Identification of Parasites of Public Health Concern (RRID:SCR_002335) | DPDx | database, topical portal, data repository, production service resource, material analysis service, storage service resource, biomaterial analysis service, portal, data or information resource, data set, image collection, service resource, analysis service resource | Parasite-related portal including concise reviews of parasites and parasitic diseases, an image library, a review of recommended procedures for collecting, shipping, processing, and examining biologic specimens, and a diagnostic assistance function, in which laboratorians and other health professionals desiring assistance in parasite identification can ask questions and/or send digital images of specimens for expedited review and consultation with DPD staff. This assistance is free of charge. The portal is hoped to strengthen diagnosis of, and enhance the capacity to address the global problem of parasitic diseases, both in the United States and abroad. Potential DPDx applications include: * training and continuing education of laboratorians, using material collected by CDC or contributed by other institutions * provision to health facilities worldwide of diagnostic assistance by CDC staff backed up when needed by experts from other institutions * diagnostic quizzes for self-assessment of laboratorians skills * informal, early detection of unusually clustered, atypical or emerging parasitic diseases | blastocystis, diagnosis, diagnostic, disease, global, gnathostoma, health, life cycle, micrograph, parasite, parasitic disease, pneumocystis, public health, case study, morphology, comparative morphology, intestinal tract, blood-borne parasite, life-cycle, electron micrograph, diagnostic procedure | has parent organization: Centers for Disease Control and Prevention | Parasitic disease | Most of the material is free of copyright and users are welcome to store and copy material in the public domain as they wish (please, Kindly cite the source!). Copyrighted material includes: life cycle images of Blastocystis and Pneumocystis, And electron micrograph images of Gnathostoma; if users are interested in publishing these items, They must obtain permission from the original copyright holder. | nif-0000-21126 | SCR_002335 | 2026-08-15 11:22:12 | 1 | |||||||
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NCANDA: Data Integration Component Resource Report Resource Website 1+ mentions |
NCANDA: Data Integration Component (RRID:SCR_002447) | NCANDA-Datacore | data management, experimental protocol, data or information resource, training material, software resource, narrative resource | Manuals, training materials, and computational tools developed by the National Consortium on Alcohol and NeuroDevelopment in Adolescence (NCANDA) Data Component. The NCANDA consortium consists of an Administrative Component at UC San Diego, the Data Integration Component at SRI International, and five data collection sites, Duke University, Oregon Health & Sciences University, SRI International, University of Pittsburgh, and UC San Diego. Each collection site will collect data from about 150 adolescents, each of them seen for one baseline and three annual follow-up visits. | clinical neuroinformatics, computational neuroscience, magnetic resonance, nifti, os independent, data integration, mri, bioinformatics, adolescent, alcohol, neurodevelopment |
uses: Lightweight Data Pipeline is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Stanford Research Institute International |
PMID:26562597 PMID:24296908 |
Free, Available for download, Freely available | nlx_155821 | http://ncanda.sri.com | SCR_002447 | National Consortium on Alcohol and NeuroDevelopment in Adolescence: Data Integration Component | 2026-08-15 11:22:13 | 1 | |||||
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Current Controlled Trials Resource Report Resource Website 1000+ mentions |
Current Controlled Trials (RRID:SCR_002325) | CCT | database, data repository, storage service resource, data or information resource, service resource | Free-to-view clinical trials register of clinical trials worldwide, it allows users to search, register and share information about randomized controlled trials. Publication services are also available via the range of open access peer-reviewed journals published by BioMed Central. Current Controlled Trials is run by an editorial and technical in-house team. It receives advice from an international Advisory Group, including academics, doctors and health care specialists of international renown. The Advisory Group provides valuable guidance on the current activities and possible new directions of Current Controlled Trials' two databases, the metaRegister of Controlled Trials (mRCT) and the International Standard Randomised Controlled Trial Number (ISRCTN) scheme. | controlled trial, health, public health, science, trial, randomized controlled trial, clinical trial, FASEB list |
uses: ISRCTN Registry is related to: ISRCTN Registry is parent organization of: ISRCTN Registry |
Science Navigation Group ; European Union ; administrative fee |
Free and open access | nif-0000-21104 | http://www.webcitation.org/getfile?fileid=6fc2d850dde348335d1ab0b66828190d475a6967 | SCR_002325 | Current Controlled Trials Ltd | 2026-08-15 11:22:14 | 1471 | |||||
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Avian Brain Circuitry Database Resource Report Resource Website 1+ mentions |
Avian Brain Circuitry Database (RRID:SCR_002401) | ABCD | image repository, data repository, storage service resource, data or information resource, spatially referenced dataset, image collection, service resource, atlas |
THIS RESOURCE IS NO LONGER IN SERVICE. Documented August 21, 2017. Database developed for storing, retrieving and cross-referencing neuroscience information about the connectivity of the avian brain. It contains entries about the new and old terminology of the areas and their hierarchy and data on connections between brain regions, as well as a functional keyword system linked to brain regions and connections. |
bird, relational database, anatomical atlas dataset, avian, brain region, connection, homologue, brain, structure, neuroanatomy, nomenclature |
is used by: NIF Data Federation is used by: Integrated Nervous System Connectivity is related to: Integrated Manually Extracted Annotation has parent organization: Szent Istvan University Faculty of Veterinary Science; Budapest; Hungary |
OTKA Foundation OTKA-033069 | PMID:17889371 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00386 | http://www.behav.org/abcd/ | SCR_002401 | 2026-08-15 11:22:11 | 6 | |||||
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ENZYME Resource Report Resource Website 100+ mentions |
ENZYME (RRID:SCR_002487) | ENZYME | database, data repository, storage service resource, data or information resource, service resource | A repository of information relative to the nomenclature of enzymes. It is primarily based on the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB) and it describes each type of characterized enzyme for which an EC (Enzyme Commission) number has been provided. These include * EC number * Recommended name * Alternative names (if any) * Catalytic activity * Cofactors (if any) * Pointers to the Swiss-Prot protein sequence entry(ies) that correspond to the enzyme (if any) * Pointers to human disease(s) associated with a deficiency of the enzyme (if any) We believe that the ENZYME database can be useful to anybody working with enzymes and that it can be of help in the development of computer programs involved with the manipulation of metabolic pathways. Available services include downloading ENZYME by FTP as well as report forms for a new ENZYME entry or for an error/update in an existing entry. | enzyme commission, enzyme name, nomenclature, enzyme categories, enzyme classification, enzyme nomenclature, enzyme reaction categories, gold standard |
is used by: LIPID MAPS Proteome Database is used by: Open PHACTS is related to: BRENDA is related to: ExplorEnz is related to: KEGG is related to: MetaCyc is related to: Nomenclature Committee of IUBMB is related to: Enzyme Nomenclature is related to: IntEnz- Integrated relational Enzyme database has parent organization: SIB Swiss Institute of Bioinformatics |
PMID:10592255 | Free, Available for download, Freely available | nif-0000-02803 | http://www.expasy.ch/enzyme/ | SCR_002487 | Enzyme nomenclature database | 2026-08-15 11:22:16 | 102 | |||||
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Genevestigator Resource Report Resource Website 100+ mentions |
Genevestigator (RRID:SCR_002358) | Genevestigator | database, commercial organization, production service resource, data analysis service, data or information resource, service resource, analysis service resource | A high performance search engine for gene expression that integrates thousands of manually curated public microarray and RNAseq experiments and nicely visualizes gene expression across different biological contexts (diseases, drugs, tissues, cancers, genotypes, etc.). There are two basic analysis approaches: # for a gene of interest, identify which conditions affect its expression. # for condition(s) of interest, identify which genes are specifically expressed in this/these conditions. Genevestigator builds on the deep integration of data, both at the level of data normalization and on the level of sample annotations. This deep integration allows scientists to ask new types of questions that cannot be addressed using conventional tools. | gene, genetic, animal, development, disease, meta-analysis, regulation, stage, microarray, rnaseq, visualization, gene expression, disease, drug, tissue, cancer, genotype, pharma, biomedical, conditions, genotype, anatomy, neoplasm, chemical, hormone, infection, model organism, organ, cell type, cell line, target, biomarker, similarity, FASEB list | is parent organization of: RefGenes | 4 products:, Free, Free for academic use, Account required, Paid subscription, Local installation | nif-0000-21172, OMICS_00763 | SCR_002358 | 2026-08-15 11:22:12 | 407 |
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