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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Plexon: 16 channel V-Probe Resource Report Resource Website 1+ mentions |
Plexon: 16 channel V-Probe (RRID:SCR_018784) | instrument resource | Linear electrode array used for intracranial electrophysiological recordings. V-Probe is multi-use, multi-site, linear electrode with recording sites positioned on side of sharpened, symmetric cone by Plexon Inc. Minimizes trauma to brain tissue upon insertion. Durable, highly customizable, and often used in acute research with medium to large animals. | Linear electrode, V-Probe, intracranial electrophysiological recording, Plexon Inc., minimizes trauma, brain tissue, insertion, customizable, animal research, instrument, equipment | is listed by: USEDit | Restricted | https://plexon.com/wp-content/uploads/2020/01/Probe-Technical-Guide.pdf | SCR_018784 | 2026-08-15 11:25:58 | 8 | |||||||||
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AsPredicted Resource Report Resource Website 100+ mentions |
AsPredicted (RRID:SCR_018789) | data or information resource, portal, topical portal | Website for study pre-registration. Defines minimum required criteria for pre-registration and allows authors to pre-register their study. It is standardized pre-registration that requires only what is necessary to separate exploratory from confirmatory analyses. | Study pre-registration, publish paper, evaluation, minimum required criteria, author study pre-registration, standardized pre-registration | has parent organization: University of Pennsylvania; Philadelphia; USA | Restricted | SCR_018789 | 2026-08-15 11:25:59 | 165 | ||||||||||
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Plexon: 16-channel digital headstage Resource Report Resource Website |
Plexon: 16-channel digital headstage (RRID:SCR_018783) | instrument resource | Headstage that attaches to 16-channel linear electrode arrays by Plexon Inc. Digitizes analog voltage signals and outputs them to data acquisition systems. | Headstage, digital headstage, 16 channel linear electrode arrays, Plexon Inc., voltage signal, instrument, equipment | is listed by: USEDit | Restricted | https://plexon.com/wp-content/uploads/2020/01/Digital-Headstage-Technical-Guide.pdf | SCR_018783 | Plexon 16-channel digital headstage (Generation 2) | 2026-08-15 11:25:59 | 0 | ||||||||
|
AlgPred Resource Report Resource Website 50+ mentions |
AlgPred (RRID:SCR_018780) | data access protocol, software resource, service resource, web service | Web tool for prediction of allergens based on similarity of known epitope with any region of protein. Used for prediction of allergenic proteins and mapping of IgE epitopes. | Allergen prediction, allergenic protein, allergenic protein prediction, IgE epitopes mapping, epitope, protein region, prediction, bio.tools |
is listed by: Debian is listed by: bio.tools |
Council of Scientific and Industrial Research | PMID:16844994 | Free, Freely available | biotools:algpred | https://webs.iiitd.edu.in/raghava/algpred/submission.html, https://bio.tools/algpred | SCR_018780 | 2026-08-15 11:25:58 | 94 | ||||||
|
FunGene Resource Report Resource Website 50+ mentions |
FunGene (RRID:SCR_018749) | software toolkit, database, data repository, production service resource, storage service resource, data or information resource, software resource, service resource, analysis service resource | Functional gene pipeline and repository. Functional gene repository provides collections of genes in interactive platform, while functional gene pipeline offers suite of tools for functional gene amplicon processing and analysis. Together they enable key steps in functional gene based microbial community analysis, from target selection and primer analysis to amplicon processing and ecological discovery. | Gene processing, microbial ecology, functional genes, amplification primers, phylogeny, biogeochemical cycles, amplicon analysis, ecological discovery, microbial community | has parent organization: Michigan State University; Michigan; USA | NIEHS P42 ES004911; USDA National Institute of Food and Agriculture ; NIDDK UH3 DK083993; Office of Science U.S. Department of Energy ; NIEHS |
PMID:24101916 | Free, Freely available | SCR_018749 | FunGene Pipeline | 2026-08-15 11:25:58 | 58 | |||||||
|
syngo DynaCT Resource Report Resource Website |
syngo DynaCT (RRID:SCR_018902) | data processing software, software application, software resource, data visualization software, 3d visualization software | Software tool to construct 3D models of soft tissue using CT-like cross sectional imaging. | 3D model, soft tissue, soft tissue 3D model, 3D model construction, cross sectional imaging | Restricted | SCR_018902 | Siemens Healthineers syngo DynaCT | 2026-08-15 11:26:03 | 0 | ||||||||||
|
RatsPub Resource Report Resource Website |
RatsPub (RRID:SCR_018905) | web service, data access protocol, software application, software resource, text-mining software | Web service that conducts comprehensive literature mining to identify roles of genes in addiction. Searches PubMed to find abstracts containing genes of interest and list of curated addiction related keywords. | Literature mining, addiction gene, PubMed abstract, gene, addiction, addiction relationship, neurogenetics | NIDA P30 DA044223; NIDA U01 DA047638 |
Free, Freely available | https://github.com/chen42/ratspub | SCR_018905 | rats.pub, Rats.pub, Relationship with Addiction Through Searches of PubMed | 2026-08-15 11:26:03 | 0 | ||||||||
|
BadMedicine Resource Report Resource Website 1+ mentions |
BadMedicine (RRID:SCR_018879) | software toolkit, software development tool, code testing framework, software application, software resource, software library | Software library and command line tool for generating realistic looking synthetic Electronic Health Records data for testing purposes. | Electronic Health Record, electronic health record data generation, health data, testing health data, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Freely available | biotools:badmedicine | https://bio.tools/badmedicine | SCR_018879 | 2026-08-15 11:26:02 | 1 | ||||||||
|
robvis Resource Report Resource Website 100+ mentions |
robvis (RRID:SCR_018755) | robvis | software toolkit, web application, software resource | Software R package and web app, which facilitates rapid production of publication quality risk of bias assessment figures. Used to produce high quality figures that summarize the risk-of-bias assessments performed as part of systematic review or research synthesis project. | Risk of bias assessment, publication figure, publication quality figure, figure production, systematic review, research synthesis project | is related to: Shiny | University of Bristol ; University Hospitals Bristol NHS Foundation Trust |
DOI:10.1002/jrsm.1411 | Free, Freely available | SCR_018755 | Risk Of Bias VISualization | 2026-08-15 11:25:58 | 100 | ||||||
|
Zeiss: Axio Imager 2 Resource Report Resource Website 10+ mentions |
Zeiss: Axio Imager 2 (RRID:SCR_018876) | instrument resource | Axio Imager 2 resolves samples from tissue sections in pathology to brain specimens in neuroscience to multi dyed FISH specimens. Works with ZEN imaging software. | Upright microscope, Zeiss, imaging microscope, instrument, equipment, upright microscope platform, |
is used by: Icahn School of Medicine at Mount Sinai Microscopy and Advanced Bioimaging Core Facility is related to: Zeiss: Axio Imager M2 is related to: Zeiss: Axio Imager Z2m system |
https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018876.pdf | SCR_018856 | https://www.zeiss.com/microscopy/us/products/light-microscopes/axio-imager-2-for-biology.html | SCR_018876 | Axio Imager 2 | 2026-08-15 11:26:00 | 41 | |||||||
|
ScanITD Resource Report Resource Website 1+ mentions |
ScanITD (RRID:SCR_018886) | data processing software, software application, data analysis software, software resource, sequence analysis software | Open source software Python tool for detecting internal tandem duplication with variant allele frequency estimation. | Internal tandem duplication, FLT3, acute myeloid leukemia, TCGA, chimeric alignment, variant allele frequency, variant allele, frequency estimation, , bio.tools |
is listed by: Debian is listed by: bio.tools |
Acute Myeloid Leukemia | DOI:10.5524/100775 | Free, Available for download, Freely available | biotools:ScanItD | https://bio.tools/ScanITD, http://gigadb.org/dataset/100775 | SCR_018886 | Scan Internal Tandem Duplications | 2026-08-15 11:26:02 | 1 | |||||
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ROSIE Resource Report Resource Website 10+ mentions |
ROSIE (RRID:SCR_018764) | ROSIE | data access protocol, application programming interface, web application, software resource | Unified web framework for Rosetta applications. Web interface for selected Rosetta protocols. Web front end for Rosetta software suite. Provides common user interface for Rosetta protocols, stable application programming interface for developers to add additional protocols, flexible back-end to allow leveraging of computer cluster resources shared by Rosetta Commons member institutions, and centralized administration by Rosetta Commons to ensure continuous maintenance. Offers general and speedy paradigm for serverification of Rosetta applications. Lowers barriers to Rosetta use for broader biological community. | Web interface for Rosetta, Rosetta online server, Rosetta application serverification, Rosetta user interface | works with: Rosetta | NIGMS R01 GM073151; NIGMS R01 GM07822; NIGMS R21 GM102716; NCRR R00 RR024107; NCI U54 CA143907; NEI PN2 EY016586; NIGMS T32 GM 88118; Taiwan Governmental Scholarship for Study Abroad ; Howard Hughes Medical and Institute International Student Research Fellowship ; NSF |
PMID:23717507 | Restricted | https://rosie.rosettacommons.org/ | SCR_018764 | Rosetta Online Server that Includes Everyone | 2026-08-15 11:25:58 | 10 | |||||
|
Chinese Glioma Genome Atlas Resource Report Resource Website 1000+ mentions |
Chinese Glioma Genome Atlas (RRID:SCR_018802) | CGGA | database, topical portal, portal, data or information resource, data set, disease-related portal | Web application for data storage and analysis to explore brain tumors datasets from Chinese cohorts. Data portal for storage and interactive exploration of multi-dimensional functional genomic data that includes primary and recurrent glioma samples from Chinese cohorts. Allows users to browse DNA mutation profile, mRNA/microRNA expression profile and methylation profile, and to do correlation and survival analysis in specific glioma subtype. | Functional genomic data, glioma samples, brain tumor datasets, Chinese cohort, whole exome sequencing data, DNA methylation data, mRNA sequencing data, microRNA microarray data, clinical data, DNA mutation profile analysis, expression profile, methylation profile, survival analysis, glioma subtype, FASEB list | Glioma | DOI:10.1101/2020.01.20.911982 | Free, Freely available | SCR_018802 | 2026-08-15 11:26:00 | 1344 | ||||||||
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Random DNA Sequence Generator Resource Report Resource Website 10+ mentions |
Random DNA Sequence Generator (RRID:SCR_018768) | data access protocol, software resource, service resource, web service | Web application to generate random DNA sequences. | Random DNA, random DNA sequence, generate random DNA, sequence, generation | is related to: University of California at Irvine; California; USA | Free, Freely available | SCR_018768 | 2026-08-15 11:25:58 | 22 | ||||||||||
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TRiCoLOR Resource Report Resource Website 1+ mentions |
TRiCoLOR (RRID:SCR_018801) | data processing software, software application, data analysis software, software resource, sequence analysis software | Command line application for tandem repeats profiling from error prone long read sequencing data. Works on data from Oxford Nanopore Technologies and Pacific Biosciences sequencers. Used on whole genome alignments. | Tandem repeat, long read sequencing data, whole genome alignment, data analysis, sequence analysis, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Available for download, Freely available | biotools:tricolor | https://bio.tools/tricolor | SCR_018801 | 2026-08-15 11:25:58 | 2 | ||||||||
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A.M.P.I.: Master 8 stimulator Resource Report Resource Website 1+ mentions |
A.M.P.I.: Master 8 stimulator (RRID:SCR_018889) | instrument resource | Pulse generator that can hold 8 different pre-programmed paradigms all of which can use up to all 8 channels. | A.M.P.I, pulse generator, eight channel generator, programmable generator, instrument, equipment | Restricted | https://neurophysics.ucsd.edu/Manuals/Master%208/Master%208%20Eight%20Channel%20Programmable%20Pulse%20Generator.pdf | SCR_018889 | Master-8 EIGHT CHANNEL PROGRAMMABLE PULSE GENERATOR, Master-8 Eight Channel Programmable Pulse Generator | 2026-08-15 11:26:00 | 8 | |||||||||
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STAMP Resource Report Resource Website 500+ mentions |
STAMP (RRID:SCR_018887) | software toolkit, data processing software, software application, data analysis software, software resource, data visualization software | Open source software package for analyzing taxonomic or metabolic profiles that promotes best practices in choosing appropriate statistical techniques and reporting results. Graphical software package that provides statistical hypothesis tests and exploratory plots for analyzing taxonomic and functional profiles. Supports tests for comparing pairs of samples or samples organized into two or more treatment groups. | Statistical analysis, taxonomic profile, functional profile, metabolic profile, statistical hypothesis test, plot, sample, sample group, sample pair comparison, bio.tools |
is listed by: Debian is listed by: bio.tools |
Genome Atlantic ; Natural Sciences and Engineering Research Council of Canada ; Australian Research Council ; Canada Foundation for Innovation ; Canada Research Chairs program ; Dalhousie Faculty of Computer Science ; Dalhousie Centre for Comparative Genomics and Evolutionary Bioinformatics ; Tula Foundation Killam Trust |
PMID:25061070 | Free, Freely available | biotools:stamp-metagenomic | https://github.com/dparks1134/STAMP, https://github.com/dparks1134/STAMP/releases, https://bio.tools/stamp-metagenomic | SCR_018887 | STAMP v2.1.3, statistical analysis of taxonomic and functional profiles | 2026-08-15 11:25:59 | 588 | |||||
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GOnet Resource Report Resource Website 1+ mentions |
GOnet (RRID:SCR_018977) | data access protocol, software resource, service resource, web service | Web tool for interactive Gene Ontology analysis of any biological data sources resulting in gene or protein lists. | Gene Ontology, interactive analysis, data, gene, protein, gene list, protein list, analysis, bio.tools |
is listed by: Debian is listed by: bio.tools works with: Gene Ontology |
NIH Common Fund ; NIGMS ; NHGRI R24 HG010032; NIAID U19 AI118610; NIAID U19 AI118626 |
PMID:30526489 | biotools:GOnet | https://github.com/mikpom/gonet, https://bio.tools/GOnet | SCR_018977 | 2026-08-15 11:26:00 | 7 | |||||||
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Cole-Parmer: Masterflex L/S Variable Speed Digital Drive with Remote I/O peristaltic pump Resource Report Resource Website 1+ mentions |
Cole-Parmer: Masterflex L/S Variable Speed Digital Drive with Remote I/O peristaltic pump (RRID:SCR_019028) | instrument resource | Peristaltic pump with flow rate 0.06 to 3400 mL/min, three digit LED display, reversible motor, LED indicators to confirm motor direction and speed range from 6 to 600 rpm. | Pump, reversible motor, peristaltic pump, LED display, variable speed, Perkin Parmer | is listed by: USEDit | Restricted | SCR_019028 | 6 to 600 rpm; 90 to 260 VAC, Masterflex L/S Variable-Speed Digital Drive with Remote I/O | 2026-08-15 11:26:01 | 4 | |||||||||
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Toolbox for Representational Similarity Analysis Resource Report Resource Website 1+ mentions |
Toolbox for Representational Similarity Analysis (RRID:SCR_019029) | software toolkit, data processing software, software application, data analysis software, software resource | Software Matlab toolbox to perform representational similarity analysis for neural data. | Representional similarity analysis, data analysis, data, neural data |
is related to: MATLAB has parent organization: University of Cambridge; Cambridge; United Kingdom |
UK Medical Research Council ; European Research Council Starting Grant ; European Research Council Advanced Grant |
PMID:24743308 | Free, Available for download, Freely available | SCR_019029 | RSA toolbox | 2026-08-15 11:26:08 | 9 |
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