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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Segtools Resource Report Resource Website 1+ mentions |
Segtools (RRID:SCR_004394) | software resource, source code | Segtools is a Python package designed to put genomic segmentations back in the context of the genome! Using R for graphics, Segtools provides a number of modules to analyze a segmentation in various ways and help you interpret its biological relevance. Segmentations should be in BED4+ or GFF format, with the ''name'' field of each line used specifying the segment label of that line. The Segtools commands allow you to compare the properties of the segment labels with one another. | has parent organization: University of Washington; Seattle; USA | PMID:22029426 | nlx_40271 | SCR_004394 | 2026-08-15 11:30:38 | 5 | ||||||||||
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Ben-Gurion University of the Negev; Beer-Sheva; Israel Resource Report Resource Website |
Ben-Gurion University of the Negev; Beer-Sheva; Israel (RRID:SCR_004031) | BGU | institution, university | Public research university in Beersheba, Israel. Ben-Gurion University of the Negev has five campuses: the Marcus Family Campus, Beer Sheva; the David Bergmann Campus, Beer Sheva; the David Tuviyahu Campus, Beer Sheva; the Sede Boqer Campus, and Eilat Campus. |
is parent organization of: TissueNet - The Database of Human Tissue Protein-Protein Interactions is parent organization of: ResponseNet is parent organization of: NetAge Database is parent organization of: LMAS |
nlx_156770 | SCR_004031 | Ben-Gurion University of the Negev, Ben Gurion University, Ben-Gurion University of the Negev; Beersheva; Israel | 2026-08-15 11:30:31 | 0 | |||||||||
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National Yang-Ming University; Taipei; Taiwan Resource Report Resource Website |
National Yang-Ming University; Taipei; Taiwan (RRID:SCR_004826) | institution, university |
is parent organization of: SET is parent organization of: YM500 is parent organization of: DriverDB is parent organization of: SCAdb: A CANDIDATE GENE DATABASE FOR SPINOCEREBELLAR ATAXIAS |
SCR_004826 | 2026-08-15 11:30:38 | 0 | |||||||||||||
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ABIDE Resource Report Resource Website 100+ mentions |
ABIDE (RRID:SCR_003612) | ABIDE | data or information resource, data set | Resting state functional magnetic resonance imaging (R-fMRI) datasets from 539 individuals with autism spectrum disorder (ASD) and 573 typical controls. This initiative involved 16 international sites, sharing 20 samples yielding 1112 datasets composed of both MRI data and an extensive array of phenotypic information common across nearly all sites. This effort is expected to facilitate discovery science and comparisons across samples. All datasets are anonymous, with no protected health information included. | phenotype, resting state functional magnetic resonance imaging, mri, image, fmri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: 1000 Functional Connectomes Project has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Autism spectrum disorder, Normal | Leon Levy Foundation ; Joseph P. Healy ; Stavros Niarchos Foundation ; NIMH K23MH087770; NIMH R03MH096321 |
Account required, Creative Commons Attribution-NonCommercial-ShareAlike License, v3 | nlx_157761 | SCR_003612 | Autism Brain Imaging Data Exchange | 2026-08-15 11:30:34 | 227 | |||||
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BreakDB Resource Report Resource Website |
BreakDB (RRID:SCR_003134) | BreakDB | data or information resource, data set | Data set developed to store, annotate and dsplay structural variant (SV) breakpoint events identified by PEMer and from other sources. | structural variant, breakpoint |
is related to: PEMer has parent organization: European Molecular Biology Laboratory |
PMID:19236709 | Free, Freely available | nlx_156789 | SCR_003134 | Break DB | 2026-08-15 11:30:33 | 0 | ||||||
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GSE13168 Resource Report Resource Website 1+ mentions |
GSE13168 (RRID:SCR_003651) | GSE13168 | data or information resource, data set | Curated data set from a study that assessed the effects of epidermal growth factor and interleukin 1-beta stimulation, and the modulatory effects of glucocorticoids treatment and protein kinase A inhibition, on the airway smooth muscle transcriptome by microarray analysis. The samples from 4 donors were subjected to different stimulations by Il-1b and EGF (or both) with or without pre-treatment with fluticasone, and data was collected at different timepoints. | epidermal growth factor, interleukin 1-beta, glucocorticoid, protein kinase a, airway, smooth muscle, microarray, fluticasone |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Asthma | Free, Public | nlx_157803 | SCR_003651 | 2026-08-15 11:30:37 | 2 | |||||||
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Kumamoto University; Kumamoto; Japan Resource Report Resource Website |
Kumamoto University; Kumamoto; Japan (RRID:SCR_004102) | institution, university |
is related to: Center for Animal Resources and Development is parent organization of: Cytokine Family Database |
SCR_004102 | 2026-08-15 11:30:37 | 0 | |||||||||||||
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FSSP - Families of Structurally Similar Proteins Resource Report Resource Website |
FSSP - Families of Structurally Similar Proteins (RRID:SCR_003534) | FSSP | data or information resource, data set | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone., documented September 6, 2016. FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank. The database currently contains an extended structural family for each of 330 representative protein chains. Each data set contains structural alignments of one search structure with all other structurally significantly similar proteins in the representative set (remote homologs, below 30%% sequence identity), as well as all structures in the Protein Data Bank with 70-30%% sequence identity relative to the search structure (medium homologs). Very close homologs (above 70 % sequence identity) are excluded as they rarely have marked structural differences. The alignments of remote homologs are the result of pairwise all-against-all structural comparisons in the set of 330 representative protein chains. All such comparisons are based purely on the 3D co-ordinates of the proteins and are derived by automatic (objective) structure comparison programs. The significance of structural similarity is estimated based on statistical criteria. The FSSP database is available electronically and by anonymous ftp (file transfer protocol). | computer algorithm, modular protein design, protein folding, protein structure alignment, protein structure, gold standard | has parent organization: European Bioinformatics Institute | Commission of the European Communities and Human Frontiers Science Program ; EMBO |
PMID:1304898 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_10193 | http://www.sander.ebi.ac.uk/dali/fssp/ | SCR_003534 | families of structurally similar proteins | 2026-08-15 11:30:34 | 0 | ||||
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Speech Language Disorders Database Resource Report Resource Website |
Speech Language Disorders Database (RRID:SCR_003655) | SLDB | data or information resource, data set | Curated lists of genes associated to speech / language phenotypes and structural or functional abnormalities observed in patient populations. Entrez ID gene information, as well as gene expression profiles from the Allen Brain Atlas are available. You can also download expression data for a given gene in JSON or XML format. | gene, speech, language, phenotype, locus, structure, function, gene expression |
is related to: Allen Human Brain Atlas has parent organization: Boston University; Massachusetts; USA |
Speech disorder, Language disorder | nlx_157808 | SCR_003655 | Speech/Language Disorders Database, Speech / Language Disorders Database | 2026-08-15 11:30:35 | 0 | |||||||
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GSE8650 Resource Report Resource Website 1+ mentions |
GSE8650 (RRID:SCR_003647) | data or information resource, data set | Curated data set from analyzed gene expression profiles in 19 pediatric patients with SoJIA during the systemic phase of the disease (fever and/or arthritis), 25 SoJIA patients with no systemic symptoms (arthritis only or no symptoms), 39 healthy controls, 94 pediatric patients with acute viral and bacterial infections (available under GSE6269), 38 pediatric patients with Systemic Lupus Erythematosus (SLE), and 6 patients with a second IL-1 mediated disease known as PAPA syndrome. | gene expression profile, gene expression, pediatric, young human |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Inflammatory disease, Systemic-onset Juvenile Idiopathic Arthritis, Healthy control | Free, Public | nlx_157799 | SCR_003647 | 2026-08-15 11:30:34 | 4 | ||||||||
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Cognitive Electrophysiology Data Portal Resource Report Resource Website 10+ mentions |
Cognitive Electrophysiology Data Portal (RRID:SCR_003129) | Cognitive Electrophysiology Data Portal | data or information resource, data set | Multiple data sets, and associated publications, of electrophysiological data from the Computational Memory Lab, University of Pennsylvania. Separate requests must be made for each dataset. A collection of behavioral testing data is also available. | cognitive, electrophysiology, behavior, cognitive electrophysiology data | has parent organization: University of Pennsylvania; Philadelphia; USA | Free, Available for download, Freely available | nlx_156800 | SCR_003129 | 2026-08-15 11:30:29 | 21 | ||||||||
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University of Sherbrooke; Quebec; Canada Resource Report Resource Website |
University of Sherbrooke; Quebec; Canada (RRID:SCR_003887) | institution, university |
is parent organization of: Universite de Sherbrooke Labs and Facilities is parent organization of: MtbRegList is parent organization of: University of Sherbrooke Hospital Centre; Quebec; Canada is parent organization of: Universite de Sherbrooke Najmanovich Research Group Core Facility |
SCR_003887 | University of Sherbrooke, Université de Sherbrooke, Universite de Sherbrooke | 2026-08-15 11:30:31 | 0 | ||||||||||||
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University of Texas MD Anderson Cancer Center Resource Report Resource Website 500+ mentions |
University of Texas MD Anderson Cancer Center (RRID:SCR_004699) | MD Anderson Cancer Center | institution | The mission of The University of Texas MD Anderson Cancer Center is to eliminate cancer in Texas, the nation, and the world through outstanding programs that integrate patient care, research and prevention, and through education for undergraduate and graduate students, trainees, professionals, employees and the public. VISION: We shall be the premier cancer center in the world, based on the excellence of our people, our research-driven patient care and our science. We are Making Cancer History. |
is related to: National Chimpanzee Brain Resource has parent organization: University of Texas System; Texas; USA is parent organization of: MD Anderson Clone Bank is parent organization of: MD Anderson Pancreas Tissue Bank is parent organization of: MD Anderson Gynecologic Cancer Tissue Bank is parent organization of: VirusSeq is parent organization of: SpliceSeq is parent organization of: Chimpanzee Biomedical Research Resource is parent organization of: Owl Monkey Breeding and Research Resource is parent organization of: Squirrel Monkey Breeding and Research Resource is parent organization of: DupRecover is parent organization of: targetHub is parent organization of: Rhesus Monkey Breeding and Research is parent organization of: FamSeq is parent organization of: TAD is parent organization of: BreakFusion is parent organization of: RPPA Core Facility is parent organization of: University of Texas MD Anderson Cancer Center Advanced Microscopy Core Facility is parent organization of: University of Texas MD Anderson Functional Genomics Core Facility is parent organization of: University of Texas MD Anderson Research Histology Core Facility is parent organization of: University of Texas MD Anderson Cancer Center Small Animal Imaging Facility is parent organization of: A3D3a MVP is parent organization of: University of Texas MD Anderson Cancer Center Mass Spectrometry Imaging Core Facility |
Crossref funder ID: 100007313, nif-0000-24365, SCR_008276, nlx_69261, Wikidata: Q1525831, ISNI: 0000 0001 2291 4776, grid.240145.6 | https://ror.org/04twxam07 | SCR_004699 | UT M.D. Anderson Cancer Center, M.D. Anderson Cancer Center, UT MD Anderson Cancer Center | 2026-08-15 11:30:32 | 949 | ||||||||
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University of Connecticut; Connecticut; USA Resource Report Resource Website 1+ mentions |
University of Connecticut; Connecticut; USA (RRID:SCR_003764) | UConn | university | University of Connecticut is a public land-grant research university system with its main campus in Storrs, Connecticut, United States. It was founded in 1881 as the Storrs Agricultural School, named after two benefactors. In 1893, the school became a public land grant college, then took its current name in 1939. |
is related to: Track-A-Worm is parent organization of: SVseq is parent organization of: Research Tissue Repository - University of Connecticut is parent organization of: NRCAM is parent organization of: Minimotif Miner is parent organization of: IsoEM is parent organization of: LASAGNA-Search is parent organization of: University of Connecticut School of Pharmacy is parent organization of: University of Connecticut Labs and Facilities is parent organization of: UConn Analytical Ultracentrifugation Facility is parent organization of: University of Connecticut Flow Cytometry Core Facility is parent organization of: UConn High-Throughput Screening Facility is parent organization of: UConn Microcalorimetry Facility is parent organization of: UConn Nanofabrication Facility is parent organization of: UConn Nuclear Magnetic Resonance Facility is parent organization of: UConn Protein X-Ray Crystallography Facility is parent organization of: Center for Cell Analysis and Modeling is parent organization of: HeteroAnalysis is parent organization of: In vivo - In silico Metabolite Database is parent organization of: pLogo is parent organization of: BioSimulations is parent organization of: EnTAP is parent organization of: University of Connecticut Health Center for Cell Analysis and Modeling Microscopy Core Facility is parent organization of: University of Connecticut Advanced Light Microscopy Core Facility |
, ISNI 0000 0001 0860 4915, GRID grid.63054.34, Wikidata Q49206, Crossref Funder ID 100009073 | https://ror.org/02der9h97 | SCR_003764 | University of Connecticut | 2026-08-15 11:30:37 | 4 | ||||||||
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BamView Resource Report Resource Website 10+ mentions |
BamView (RRID:SCR_004207) | BamView | software resource, source code | A free interactive display of read alignments in BAM data files that can be launched with Java Web Start or downloaded. This interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome sequence can be used in a number of contexts including SNP calling and structural annotation. It has been integrated into Artemis so that the reads can be viewed in the context of the nucleotide sequence and genomic features. The source code is available as part of the Artemis code which can be downloaded from GitHub. | bam, next-generation sequencing, java, snp calling, structural annotation, macosx, unix, windows, visualize, analyze, sequence read, reference sequence, single nucleotide polymorphism, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: SourceForge has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:22253280 PMID:20071372 |
GNU General Public License | biotools:bamview, OMICS_00878, nlx_22933 | https://bio.tools/bamview | SCR_004207 | 2026-08-15 11:30:37 | 21 | ||||||
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Resources for Enhancing Alzheimers Caregiver Health Resource Report Resource Website |
Resources for Enhancing Alzheimers Caregiver Health (RRID:SCR_003638) | REACH | data or information resource, data set | Data set from six research sites that examined the feasibility and outcomes of the most promising home and community-based intervention approaches for enhancing family caregiving for Alzheimers Disease (AD) and related disorders (ADRD). A unique feature is the examination of AD burdens and interventions in three ethnic groups (Caucasians, Hispanics, and African Americans). Caregiver/care recipient dyads are entered into the study using standardized eligibility criteria. The dyads are randomized at each intervention site using site-specific procedures. Standardized assessment batteries are administered at baseline, 6, 12, and 18 months. The five general types of REACH interventions are: Individual Information and Support strategies that increase caregivers' understanding of dementia and their particular caregiving situation; Group Support and Family Systems efforts that provide caregivers with multiple forms of social support; Psychoeducational and Skill-Based Training approaches that teach caregivers coping and behavioral management strategies; Home-Based Environmental interventions that modify the home environment's effect on the care recipient and support the caregiver; and Enhanced Technology Systems such as home-centered computer/telephone networks that are designed to reduce caregiver distress and isolation. REACH II was funded in 2001 to test a single multi-component intervention among family caregivers of persons with ADRD, building upon the findings of REACH. Recruitment for REACH II was completed in January 2004 with 642 participants entering the study across 5 participating sites. | longitudinal, minority, caucasian, hispanic, african american, intervention, caregiver, caregiver burden, emotional state, family, health services utilization, health status, home health care, mental disorder, mental health, late adult human, outreach program, psychological wellbeing, questionnaire, anxiety, caregiver health, health behavior, sociodemographic, medication |
is listed by: Inter-university Consortium for Political and Social Research (ICPSR) has parent organization: University of Pittsburgh; Pennsylvania; USA |
Aging, Alzheimer's disease, Alzheimer's related disorder, Dementia, Stress | NIA ; NINR |
nlx_157789 | http://www.edc.pitt/REACH | SCR_003638 | Resources for Enhancing Alzheimer's Caregiver Health (REACH), Resources for Enhancing Alzheimer's Caregiver Health | 2026-08-15 11:30:34 | 0 | |||||
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MultiFun Resource Report Resource Website 1+ mentions |
MultiFun (RRID:SCR_004363) | MultiFun | data or information resource, data set | MultiFun is a multifunctional classification scheme for Escherichia coli K-12 gene products. In the classification scheme, cellular functions are divided into 10 major categories: Metabolism, Information Transfer, Regulation, Transport, Cell Processes, Cell Structure, Location, Extra-chromosomal Origin, DNA Site, and Cryptic Gene. These major categories are further sub-divided into a hierarchical scheme. Two thousand nine hundred twenty-two gene products of E. coli K-12 were assigned to one or more functions depending on the role they play in the cell. Functional assignments were made to 66% of E. coli gene products, ranging from 1 to 16 assignments per gene product. The expansion of cellular function categories and the assignment to more than one category (multifunction) provides a more complete description of the gene products and their roles and hence better reflects the functional complexity of organisms. We believe this classification system will be useful in the field of genome analysis, both for annotation purposes and for comparative studies. The functional classification scheme and the cellular function assignments made to E. coli gene products can be accessed from the web at the databases GenProtEC (http://genprotec.mbl.edu) and EcoCyc (http://www.ecocyc.org). |
is related to: EcoCyc is related to: GenProtEC has parent organization: Marine Biological Laboratory |
PMID:11471834 | nlx_38338 | SCR_004363 | MultiFun: a cellfunction assignment schema, MultiFun: a cell function assignment schema | 2026-08-15 11:30:36 | 4 | ||||||||
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Arnold Arboretum of Harvard University: Weld Hill Microscopy Lab Resource Report Resource Website |
Arnold Arboretum of Harvard University: Weld Hill Microscopy Lab (RRID:SCR_004485) | service resource, access service resource, core facility | Microscopists at Weld Hill will find a range of tools from the simple hand lens to the confocal microscope for 3-D reconstructions. |
is listed by: Eagle I has parent organization: Harvard University; Cambridge; United States |
nlx_156117 | http://arboretum.harvard.edu/research/policies-and-instrumentation/microscopy-lab/ | SCR_004485 | 2026-08-15 11:30:32 | 0 | ||||||||||
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National Gene Vector Biorepository Resource Report Resource Website 10+ mentions |
National Gene Vector Biorepository (RRID:SCR_004760) | NGVB | service resource, access service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Archiving services, insertional site analysis, pharmacology and toxicology resources, and reagent repository for academic investigators and others conducting gene therapy research. Databases and educational resources are open to everyone. Other services are limited to gene therapy investigators working in academic or other non-profit organizations. Stores reserve or back-up clinical grade vector and master cell banks. Maintains samples from any gene therapy related Pharmacology or Toxicology study that has been submitted to FDA by U.S. academic investigator that require storage under Good Laboratory Practices. For certain gene therapy clinical trials, FDA has required post-trial monitoring of patients, evaluating clinical samples for evidence of clonal expansion of cells. To help academic investigators comply with this FDA recommendation, the NGVB offers assistance with clonal analysis using LAM-PCR and LM-PCR technology. | gene therapy, clinical trial, testing, insertion site, gene, clinical, vector, cell line, pharmacology, toxicology, clonal analysis, FASEB list |
is related to: NIDDK Information Network (dkNET) is related to: Phoenix has parent organization: Indiana University School of Medicine; Indiana; USA is parent organization of: NGVB SeqMap Database is parent organization of: NGVB Toxicology Database |
NHLBI ; NCRR |
PMID:31910049 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_76398 | http://www.ngvl.org/, https://www.ngvbcc.org/Home.action | SCR_004760 | 2026-08-15 11:30:36 | 33 | |||||
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Equitech-Bio Resource Report Resource Website 10+ mentions |
Equitech-Bio (RRID:SCR_003548) | reagent supplier, commercial organization, material resource | Provides animal and human serums, plasmas, purified proteins, and antisera. | nlx_152358 | SCR_003548 | 2026-08-15 11:30:34 | 14 |
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