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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Molecular Signatures Database Resource Report Resource Website 500+ mentions |
Molecular Signatures Database (RRID:SCR_016863) | MSigDB | data or information resource, database | Collection of annotated gene sets for use with Gene Set Enrichment Analysis (GSEA) software. | collection, annotated, gene, set, GSEA, enrichment, analysis, genome, RNA, expression, data, FASEB list, DRKB |
uses: GSEA uses: Gene Set Enrichment Analysis has parent organization: Broad Institute |
NIH ; NIGMS ; NCI CA295532 |
Free, Freely available, Registration required to download GSEA software | https://www.gsea-msigdb.org/gsea/msigdb/ | SCR_016863 | Molecular Signatures Database, The Molecular Signatures Database, MSigDB, MSigDB database v6.2 | 2026-08-05 10:46:45 | 762 | ||||||
|
Cerebellar Platform Resource Report Resource Website 1+ mentions |
Cerebellar Platform (RRID:SCR_001700) | Cerebellar Platform | software repository, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented January 13, 2022. Digital research archive for cerebellar research including mini-reviews of contemporary cerebellar research, list of papers and mathematical models for cerebellar operation. | electrophysiology, function, analysis, cerebellar, data, imaging, mathematical, model, molecular biology, paper, plasticity, program, review, script, structure, theory, book, cerebellum |
is used by: NIF Data Federation is related to: Integrated Software has parent organization: RIKEN Brain Science Institute |
Japan Society for the Promotion of Science | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10193 | SCR_001700 | 2026-08-05 10:43:26 | 1 | |||||||
|
Onto-Design Resource Report Resource Website |
Onto-Design (RRID:SCR_000601) | Onto-Design | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 6,2023. Many Laboratories chose to design and print their own microarrays. At present, the choice of the genes to include on a certain microarray is a very laborious process requiring a high level of expertise. Onto-Design database is able to assist the designers of custom microarrays by providing the means to select genes based on their experiment. Design custom microarrays based on GO terms of interest. User account required. Platform: Online tool | microarray, gene, biological process, molecular function, cellular component, data-mining, browser, visualization, analysis, design, search engine, ontology or annotation browser, ontology or annotation search engine, ontology or annotation visualization, database or data warehouse, other analysis, design custom microarrays based on go terms of interest |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Wayne State University; Michigan; USA |
PMID:15215428 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149109 | SCR_000601 | 2026-08-05 10:43:12 | 0 | |||||||
|
Donald Danforth Plant Science Center Bioanalytical Chemistry Facility Resource Report Resource Website |
Donald Danforth Plant Science Center Bioanalytical Chemistry Facility (RRID:SCR_001047) | access service resource, service resource, core facility | Facility provides tools for high quality plant and biological sample analysis in proteomics, mass spectrometry, metabolomics, ionomics, and related analytical fields. It works with academic and commercial institutions and has established collaborations with many principle investigators. | Plant, sample, analysis, proteomics, mass spectrometry, metabolomics, ionomics, elemental profiling |
is listed by: ABRF CoreMarketplace has parent organization: Donald Danforth Plant Science Center |
Restricted | ABRF_194 | https://coremarketplace.org/?FacilityID=194 | http://www.scienceexchange.com/facilities/proteomics-and-mass-spectrometry-facility, https://www.danforthcenter.org/scientists-research/core-technologies/proteomics-mass-spectrometry | SCR_001047 | Danforth Center Proteomics and Mass Spectrometry Facility, Donald Danforth Plant Science Center Proteomics and Mass Spectrometry Facility, Proteomics and Mass Spectrometry Facility, Danforth Center Ionomics, Danforth Center Mass Spectrometry Facility, Danforth Center Proteomics Facility | 2026-08-05 10:43:18 | 0 | ||||||
|
UAlbany Proteomics Core Facility Resource Report Resource Website |
UAlbany Proteomics Core Facility (RRID:SCR_001048) | access service resource, service resource, core facility | A core facility that provides services in the identification of individual proteins, characterization of entire protein complexes or biosimilars, and global analysis to discover changes in the proteomes of different samples. The core also specializes in the development of custom assays for quantitation of specific molecules in complex clinical samples. | proteins, biosimilars, analysis, proteomics, core facility, custom assays, quantitation |
is listed by: ScienceExchange has parent organization: University at Albany Center for Functional Genomics |
Available to the research community, Fee-for-service basis, Available to investigators at the University at Albany, Available to academic institutions, Available to commercial entities | SciEx_537 | http://www.scienceexchange.com/facilities/proteomics-core-facility-ualbany | SCR_001048 | UAlbany CFG Proteomics Core Facility, University at Albany CFG Proteomics Core Facility, University at Albany Center for Functional Genomics Proteomics Core Facility | 2026-08-05 10:43:17 | 0 | |||||||
|
Center for Functional Neuroimaging Technologies Resource Report Resource Website 1+ mentions |
Center for Functional Neuroimaging Technologies (RRID:SCR_001423) | CFNT | biomedical technology research center, training resource, service resource, access service resource | Biomedical technology research center that develops and applies innovative neuroimaging technologies and techniques to enable closer examination of the human brain, and thereby contribute to better understanding of the brain in health and disease. They develop new techniques and advance existing technologies for acquisition and analysis of functionally specific images of the working brain, with unprecedented physiological precision and spatiotemporal resolution. The research and development aims to improve and extend existing methods for non-invasive magnetic resonance image analysis and acquisition, electromagnetic source imaging, optical neuroimaging, and most recently, combined MR-PET neuroimaging. The Resource provides an essential interactive environment, within which an interdisciplinary team of highly skilled scientists, engineers, and clinicians with diverse expertise in multiple modalities and disciplines. The resource supports service use of the Center's facilities by neuroscientists throughout the country, provide extensive training opportunities for students, fellows, and staff scientists, and seek to advance the field of brain mapping through active dissemination of new knowledge and technology. | mri, neuroimaging, pet, acquisition, analysis, brain, electromagnetic source imaging, optical neuroimaging, multimodal, magnetic resonance, eeg, meg, electrocorticography, information resource, optical imaging |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Harvard Medical School; Massachusetts; USA |
NIBIB 5P41EB015896-18 | Free, Available for download, Freely available | nlx_152644 | http://www.nitrc.org/projects/cfnt | SCR_001423 | 2026-08-05 10:43:21 | 1 | ||||||
|
Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services Resource Report Resource Website |
Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services (RRID:SCR_010065) | TU BIMS | access service resource, service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2023. Core provides services and training in computational biology, bioinformatics, experimental design and statistical analysis to the RCMI researchers and the biomedical research community at Tuskegee University. | service, training, computational, biology, bioinformatics, experimental, design, statistical, analysis |
is listed by: Eagle I has parent organization: Tuskegee University; Alabama; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156535 | SCR_010065 | TU, Computational Biology, BIMS, Tuskegee University, Information Management Services, Bioinformatics, Biomedical | 2026-08-05 10:45:19 | 0 | |||||||
|
Amino_acid_composition_and_hydrophobicity_analysis Resource Report Resource Website |
Amino_acid_composition_and_hydrophobicity_analysis (RRID:SCR_026281) | software toolkit, source code, software resource | Software package to analyze amino acid content and hydrophobicity profile of given set of protein sequences in fasta file. Used for analysis of amino acid composition and hydrophobicity of test sequences from fasta files. | Analysis, amino acid composition, hydrophobicity, test sequences, fasta files, | Free, Available for download, Freely available, | SCR_026281 | 2026-08-05 10:48:26 | 0 | |||||||||||
|
Purdue University College of Agriculture Research Services Core Facility Resource Report Resource Website |
Purdue University College of Agriculture Research Services Core Facility (RRID:SCR_027377) | access service resource, service resource, core facility | ARGE Research Services is dedicated to empowering Purdue Agriculture research by providing expert solutions in conducting team science, implementing best practices for data acquisition, stewardship, and analysis. | ABRF, data acquisition, stewardship, analysis |
is listed by: ABRF CoreMarketplace has parent organization: Purdue University; West Lafayette; Indiana |
Restricted | ABRF_4694 | https://coremarketplace.org/RRID:SCR_027377/?citation=1 | SCR_027377 | 2026-08-05 10:48:41 | 0 | ||||||||
|
University Health Network Quantitative Imaging for Personalized Cancer Medicine Advanced Imaging Core Facility Resource Report Resource Website |
University Health Network Quantitative Imaging for Personalized Cancer Medicine Advanced Imaging Core Facility (RRID:SCR_027527) | access service resource, service resource, core facility | Provides testing and analysis support for clinical trials to improve consistency and reliability in clinical trial data.Helps clinical investigators achieve systematic image collection and improved collaboration. Can help with handling large volume functional and dynamic imaging data. | ABRF, testing, analysis, clinical trials, clinical trial data, systematic image collection, imaging data, |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
Open | ABRF_5433 | https://coremarketplace.org/RRID:SCR_027527/?citation=1 | SCR_027527 | Quantitative Imaging for Personalized Cancer Medicine (QIPCM) Advanced Imaging Core Lab | 2026-08-05 10:48:42 | 0 | |||||||
|
Lady Davis Institute Flow Cytometry Core Facility Resource Report Resource Website 10+ mentions |
Lady Davis Institute Flow Cytometry Core Facility (RRID:SCR_027644) | access service resource, service resource, core facility | Core provides complete flow cytometry analysis and cell sorting services in terms of experimental design, instrumentation, training, technical assistance and scientific guidance from sample preparation to publication. | ABRF, flow cytometry, analysis, cell sorting, services, |
is listed by: ABRF CoreMarketplace has parent organization: Jewish General Hospital Lady Davis Institute for Medical Research; Montreal; Canada |
ABRF_5644 | https://coremarketplace.org/RRID:SCR_027644/?citation=1 | SCR_027644 | 2026-08-05 10:48:46 | 11 | |||||||||
|
Memorial Sloan Kettering Cancer Center Research Pharmacy Core Facility Resource Report Resource Website |
Memorial Sloan Kettering Cancer Center Research Pharmacy Core Facility (RRID:SCR_027807) | access service resource, service resource, core facility | Core is a full-service facility that prepares agents developed by MSK researchers to be used as investigational drugs in preclinical or clinical studies. The Core comprises three principal groups: the Pharmaceutical Product Facility (PPF) for drug formulation/stability and preparation; the Clinical Grade Production (CGP) Facility for bulk product manufacturing, purification, and vialing; and the Pharmacy Investigational Drug Service (PIDS), which develops, procures, prepares, and validates the preparation, packaging, and distribution of investigational drugs for clinical use. Core services include: formulation, analysis, and evaluation of drug release rates; prediction of interactions; and determinations of compatibility and physical stability of medications. Based on the expertise of the RP Core, MSK has been able to bring into early-phase clinical trials multiple types of pharmacologic agents, including traditional small molecules, radiopharmaceuticals, and vaccines. | ABRF, investigational drugs, preclinical or clinical studies, formulation, analysis, evaluation of drug release rates, prediction of interactions, determinations of compatibility and physical stability of medications, | is listed by: ABRF CoreMarketplace | ABRF_5708 | https://coremarketplace.org/RRID:SCR_027807/?citation=1 | SCR_027807 | 2026-08-05 10:48:48 | 0 |
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