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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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imDEV Resource Report Resource Website 1+ mentions |
imDEV (RRID:SCR_014674) | software application, systems interoperability software, software resource | A software application of RExcel that integrates R into Excel as an embedded additon for omics tasks and analysis. It can be used specifically for tasks concerning multivariate data visualization, exploration, and analysis. imDev has interactive modules for dimensional reduction, prediction, feature selection, analysis of correlation, and generation of networked structures, all of which provide an integrated environment for systems level analysis of multivariate data. | statistical analysis, statistical analysis package, r, r package, excel, data visualization, feature selection, omics, systems interoperability, software, metabolomics, bio.tools |
is listed by: Metabolomics Workbench is listed by: Debian is listed by: bio.tools |
DOI:10.1093/bioinformatics/bts439 | Supports Microsoft Excel versions 2003-2010 | biotools:imdev | https://sourceforge.net/projects/imdev/, https://bio.tools/imdev | SCR_014674 | Interactive modules for Data Exploration and Visualization, Interactive modules for Data Exploration and Visualization (imDEV) | 2026-08-15 11:29:53 | 8 | ||||||
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Avisoft SASLabPro Resource Report Resource Website 50+ mentions |
Avisoft SASLabPro (RRID:SCR_014438) | software application, data analytics software, software resource | Sound analysis software used to process and analyze animal acoustic communications. Its features include digital filtering, real-time spectrogram display, and advanced metadata management. Avisoft SASLabPro is designed to accommodate large numbers of sound files and includes organizational features, including labeling options for single point data and time section labels. | saslabpro, avisoft, spectrogram, digital filtering, sound analysis, animal acoustics, animal communication | Open Source, Public | SCR_014438 | 2026-08-15 11:30:02 | 51 | |||||||||||
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Protein Prospector Resource Report Resource Website 500+ mentions |
Protein Prospector (RRID:SCR_014558) | software toolkit, software resource | A package of over twenty mass spectrometry-based tools primarily geared toward proteomic data analysis and database mining. It can be run from the command line, but is primarily used through a web browser, and there is a public website that allows anyone to use the software without local installation. Tandem mass spectrometry analysis tools are used for database searching and identification of peptides, including post-translationally modified peptides and cross-linked peptides. Support for isotope and label-free quantification from this type of data is provided. MS-Viewer software allows sharing and displaying of annotated spectra from many different tandem mass spectrometry data analysis packages. Other tools include software for analyzing peptide mass fingerprinting data (MS-Fit); prediction of theoretical fragmentation of peptides (MS-Product); theoretical chemical or enzymatic digestion of proteins (MS-Digest); and theoretical modeling of the isotope distribution of any chemical, including peptides (MS-Isotope). Searches using amino acid sequence can be used to identify homologous peptides in a database (MS-Pattern); the use of the combination of amino acid sequence and masses can be used for homologous peptide and protein identification using MS-Homology. Tandem mass spectrometry peak list files can be filtered for the presence of certain peaks or neutral losses using MS-Filter. Given a list of proteins, MS-Bridge can report all potential cross-linked peptide combinations of a specified mass. Given a precursor peptide mass and information about known amino acid presence, absence, or modifications, MS-Comp can report all amino acid combinations that could lead to the observed mass. | database search program, database search, database management, peptide, protein, mass spectrometry, ms, utility program, batch msms, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: University of California at San Francisco; California; USA |
Open source, Freely available to academic researchers | biotools:proteinprospector | https://bio.tools/proteinprospector | SCR_014558 | ProteinProspector | 2026-08-15 11:29:53 | 595 | |||||||
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ACD/ NMR Processor Resource Report Resource Website |
ACD/ NMR Processor (RRID:SCR_014679) | software toolkit, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 27, 2016. A software package that provides 1D and 2D NMR tools as well as processing and interpretation for all other major analytical techniques (LC/MS, IR, Raman, and more) in one package. It also has support for structure verification and multiplet reports. | metabolomics, metabolomics tool, structure verification, data analysis, nmr, nmr processing | is listed by: Metabolomics Workbench | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014679 | 2026-08-15 11:30:00 | 0 | ||||||||||
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SFMProject Resource Report Resource Website |
SFMProject (RRID:SCR_014166) | software repository, software resource | Structure from motion algorithms repository. Common interface for various sfm algorithms. | motion algorithm, repository, sfm algorithm | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Available to the research community | SCR_014166 | 2026-08-15 11:30:01 | 0 | ||||||||||
|
Canvas X Resource Report Resource Website 100+ mentions |
Canvas X (RRID:SCR_014288) | software application, software resource | Illustration and communication software for engineers and technical graphics professionals that combines the ability to make 3D images while also applying filters and duatone images. The software has minimum precision levels and object illustration and image editing tools to keep data accurate throughout the authoring process. Users can accelerate and streamline the technical illustration workflow from initial import and design to final presentation, facilitate collaboration, and improve the overall productivity. Tutorials and technical documents are available on the website. | authoring tool, illustration software, engineer, technical graphics professional, technical illustration workflow | Restricted | SCR_014312 | SCR_014288 | 2026-08-15 11:30:02 | 245 | ||||||||||
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Transgenic Huntington's Disease Monkey Resources Resource Report Resource Website |
Transgenic Huntington's Disease Monkey Resources (RRID:SCR_014560) | THDMR | biomaterial supply resource, material resource | Center for resources to facilitate basic and preclinical applications of the transgenic Huntington's disease (HD) monkey model to advance scientific knowledge and the discovery of a cure for HD. Their resources include longitudinal biomaterials and MRI data, postmortem biomaterials, and research proposal assistance. | monkey, biomaterial supply resource, transgenic, huntington's disease, longitudinal, postmortem, mri, research assistance | has parent organization: Emory University; Georgia; USA | Huntington's disease | NIH Office of the Director R24 OD010930 | Biomaterials are available via request | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_014560 | Transgenic Huntington's Disease Monkey Resources (THDMR) | 2026-08-15 11:30:02 | 0 | |||||
|
SciLite Resource Report Resource Website 1+ mentions |
SciLite (RRID:SCR_015015) | software application, text-mining software, software resource | Text mining tool from Europe PMC that allows biological terms or concepts to be highlighted for readers on full text articles. These terms and concepts are identified by text mining algorithms, which are developed by a variety of text mining groups. However, it is up to the reader to control which selection of highlighted concepts they see. Once concepts of interest have been identified within the text, they are formatted according to the W3C Web Annotation Data Model and stored in a triple store via the EMBL-EBI RDF Platform. As a reader views an article in a web browser, any annotations in the triple store associated with the article are made available in a menu alongside the article. | text mining, text annotation, scientific annotation | Available to the scientific community | SCR_015015 | SciLite Annotations | 2026-08-15 11:30:01 | 7 | ||||||||||
|
wMICA Resource Report Resource Website 1+ mentions |
wMICA (RRID:SCR_015490) | algorithm resource, software resource | Weighted implementation of Maximal Information Component Analysis, a co-expression network analysis algorithm for analysis of large interconnected networks and the identification of modules of similarly-acting nodes within the larger network. | network algorithm, network analysis, gene expression network |
has parent organization: University of California at Los Angeles; California; USA is hosted by: GitHub |
PMID:23487572 | Available for download | SCR_015490 | 2026-08-15 11:29:54 | 5 | |||||||||
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UltraMegaSort 2000 Resource Report Resource Website 10+ mentions |
UltraMegaSort 2000 (RRID:SCR_015857) | algorithm resource, software resource | Matlab-based routines for the detection and clustering of putative single units from a multi-unit time series, along with quality metrics. This sofwtare was developed by the David Kleinfeld Laboratory at UC San Diego. | matlab, detection, clustering, putative single unit, multi-unit time series, metric data | is used by: MATLAB | NINDS NS051177; NINDS FNS054393A; US-Israeli Binational Science Foundation 2007121 |
PMID:21677152 | Free, Available for download | SCR_015857 | UltraMegaSort | 2026-08-15 11:30:04 | 13 | |||||||
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PhoxX Controller Resource Report Resource Website |
PhoxX Controller (RRID:SCR_016309) | software application, software resource | Software application for PhoxX® Diode Laser to support Omicron products. It is related to uManager open source microscopy software for control of microscopes. | Omicron Laserage, diode, laser, control, microscope | Free, Freely available, Available for download | https://micro-manager.org/wiki/Omicron, http://www.omicron-laser.de/english/downloads/downloads.html | SCR_016309 | 2026-08-15 11:30:05 | 0 | ||||||||||
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AxIS Resource Report Resource Website 10+ mentions |
AxIS (RRID:SCR_016308) | AxIS | software application, software resource | Software for multi electrode array recording for Axion Biosystems. Used in enhancing cardiac and neural analysis through data processing and signal monitoring. | Axion BioSystems, multi, electrode, array, recording, | Commercially available | SCR_018760 | SCR_016308 | Axion Integrated Studio | 2026-08-15 11:29:56 | 33 | ||||||||
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FINDTHECAT Resource Report Resource Website 1+ mentions |
FINDTHECAT (RRID:SCR_016036) | software application, software resource | Software that conducts a jspsych test for response time evaluation. Used in the ABCD Study. | psych, jspsych, psychology, response, time, evaluation, task, test, abcd, adolescent | NIDA U24 DA041123 | Free, Available for download | SCR_016036 | 2026-08-15 11:30:04 | 1 | ||||||||||
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NetClamp Resource Report Resource Website 1+ mentions |
NetClamp (RRID:SCR_016275) | software application, software resource | Software for dynamic clamping. It uses National Instruments Boards. | neuroscience, clamp, patch, dynamic, board, | PMID:27385799 | Free, Available for download | http://www.gothamsci.com/NetClamp/, http://www.systemsneuroscience.website/NetClamp/ | SCR_016275 | 2026-08-15 11:29:56 | 2 | |||||||||
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stroop-task Resource Report Resource Website 1+ mentions |
stroop-task (RRID:SCR_016033) | software application, software resource | Software that conducts the Stroop Color Task. Used in the ABCD Study. | stroop, task, color, vision, abcd, adolesence, study | NIDA U24 DA041123 | Free, Available for download | SCR_016033 | 2026-08-15 11:30:02 | 1 | ||||||||||
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Mosaic Resource Report Resource Website 1+ mentions |
Mosaic (RRID:SCR_017408) | software toolkit, software resource | Mosaic software features apps designed to help you derive deeper insights from videos of large scale circuit dynamics by Inscopix Inc. | Derive, deeper, insight, video, large, scale, circuit, dynamic, brain, Inscopix Inc. | PMID:26914316 | Restricted | SCR_017408 | 2026-08-15 11:29:57 | 9 | ||||||||||
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Freiburg Vision Test ('FrACT') Resource Report Resource Website 10+ mentions |
Freiburg Vision Test ('FrACT') (RRID:SCR_016439) | FrACT | software application, standalone software, software resource | Software tool for visual test battery in form of a free computer program.Can be run within your browser or download as a stand-alone program. Used by many vision labs, optometrists and ophthalmologists. | visual, test, battery, psychometric, method, automated, self paced, measurement, acuity, contrast, sensitivity, vernier | Free, Available for download, Freely available | SCR_016439 | Freiburg Acuity and Contrast Test | 2026-08-15 11:29:56 | 22 | |||||||||
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devtools Resource Report Resource Website 10+ mentions |
devtools (RRID:SCR_016961) | software toolkit, software resource | Software tools to make developing R packages easier by providing R functions that simplify and expedite common tasks. | make, developing, R, package, easier |
is used by: riboWaltz is used by: dndSCV is related to: R Project for Statistical Computing |
Free, Available for download, Freely available | SCR_016961 | 2026-08-15 11:30:06 | 20 | ||||||||||
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MIES Resource Report Resource Website 10+ mentions |
MIES (RRID:SCR_016443) | software application, software resource | Software for Electrophysiology functions. It was developed by the Allen Institute. | eeg, neuroscience, neuroimaging, channel, neuroanatomy, electricity | Free, Available for download | SCR_016443 | Multichannel Igor Electrophysiology Suite, MIES - Multichannel Igor Electrophysiology Suite, MIES: Multichannel Igor Electrophysiology Suite, Multichannel Igor Electrophysiology Suite (MIES) | 2026-08-15 11:30:05 | 21 | ||||||||||
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ReadCleaner4Scaffolding Resource Report Resource Website 1+ mentions |
ReadCleaner4Scaffolding (RRID:SCR_016166) | software application, software resource | This pipeline and the included scripts are used to filter useful reads for SSPACE. | SCR_016166 | 2026-08-15 11:30:05 | 1 |
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