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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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HPEPDOCK Server Resource Report Resource Website 10+ mentions |
HPEPDOCK Server (RRID:SCR_018561) | data access protocol, service resource, production service resource, analysis service resource, web service, software resource | Web server for blind peptide protein docking based on hierarchical algorithm. Blind peptide-protein docking by fast modeling of peptide conformations and global sampling of binding orientations. | Blind peptide protein docking, peptide conformation modeling, global sampling, blind orientation, protein, modeling, docking, bio.tools |
is listed by: bio.tools is listed by: Debian |
National Key Research and Development Program of China ; National Natural Science Foundation of China ; Huazhong University of Science and Technology |
PMID:29746661 | Free, Freely available | biotools:hpepdock | https://bio.tools/hpepdock | SCR_018561 | 2025-05-16 11:04:01 | 36 | ||||||
|
International HapMap Project Resource Report Resource Website 5000+ mentions |
International HapMap Project (RRID:SCR_002846) | HapMap | experimental protocol, database, data or information resource, narrative resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. A multi-country collaboration among scientists and funding agencies to develop a public resource where genetic similarities and differences in human beings are identified and catalogued. Using this information, researchers will be able to find genes that affect health, disease, and individual responses to medications and environmental factors. All of the information generated by the Project will be released into the public domain. Their goal is to compare the genetic sequences of different individuals to identify chromosomal regions where genetic variants are shared. Public and private organizations in six countries are participating in the International HapMap Project. Data generated by the Project can be downloaded with minimal constraints. HapMap project related data, software, and documentation include: bulk data on genotypes, frequencies, LD data, phasing data, allocated SNPs, recombination rates and hotspots, SNP assays, Perlegen amplicons, raw data, inferred genotypes, and mitochondrial and chrY haplogroups; Generic Genome Browser software; protocols and information on assay design, genotyping and other protocols used in the project; and documentation of samples/individuals and the XML format used in the project. | genetic variant, disease, genetic sequence, genetic variation, single nucleotide polymorphism, genetic diversity, dna, sequence, catalog, genome, chromosome, bio.tools |
is used by: BioSample Database at EBI is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: SNAP - SNP Annotation and Proxy Search is related to: Haploview is related to: NHGRI Sample Repository for Human Genetic Research is related to: DistiLD - Diseases and Traits in LD is related to: SNP at Ethnos is related to: GBrowse has parent organization: NCBI |
Chinese Academy of Sciences ; Chinese Ministry of Science and Technology ; Delores Dore Eccles Foundation ; Genome Canada ; Genome Quebec ; Hong Kong Innovation and Technology Commission ; Japanese Ministry of Education Culture Sports Science and Technology MEXT ; National Natural Science Foundation of China ; SNP Consortium ; University Grants Committee of Hong Kong ; Wellcome Trust ; W. M. Keck Foundation ; NIH |
PMID:14685227 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02940, biotools:int_hapmap_project, OMICS_00273 | http://www.hapmap.org/ https://bio.tools/int_hapmap_project |
http://snp.cshl.org | SCR_002846 | HapMap Project | 2025-05-16 10:55:53 | 6793 | |||
|
HLAsupE Resource Report Resource Website 1+ mentions |
HLAsupE (RRID:SCR_016277) | database, data or information resource | Database of HLA supertype-specific epitopes. It describes major histocompatibility complex (MHC) molecules that bind short peptides derived from endogenous or exogenous antigens and present them onto the surface of antigen-presenting cells (APCs) for T-cell receptor (TCR) recognition. | hla, supertype, epitope, t cell, immunology, immune, mhc, antigen, histocompatibility | National Natural Science Foundation of China 91442203; National Natural Science Foundation of China 31470899; National Natural Science Foundation of China 31270788; National Science and Technology Major Project 2012ZX09103301014; 863 Project 2012AA02A407 |
PMID:27307005 | Freely available, Tutorial available | SCR_016277 | integrated database of HLA supertype specific epitopes | 2025-05-16 11:02:45 | 1 | ||||||||
|
lnc2cancer Resource Report Resource Website 10+ mentions |
lnc2cancer (RRID:SCR_023781) | database, data or information resource | Manually curated database of experimentally supported lncRNAs associated with various human cancers. Cancer long non coding RNA database. Lnc2Cancer 3.0 is updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. | Manually curated database, experimentally supported lncRNAs, human cancer, cancer long non coding RNA, lncRNA/circRNA cancer, | National High Technology Research and Development Program of China ; National Natural Science Foundation of China ; Postdoctoral Science Foundation of China ; Postdoctoral Foundation of Heilongjiang Province ; National Key R and D Program of China ; Heilongjiang Touyan Innovation Team Program ; Heilongjiang Provincial Natural Science Foundation |
PMID:26481356 PMID:33219685 |
Free, Freely available | SCR_023781 | lnc2Cancer 3.0 | 2025-05-16 11:05:47 | 14 | ||||||||
|
Beijing: Eyes Open Eyes Closed Study Resource Report Resource Website |
Beijing: Eyes Open Eyes Closed Study (RRID:SCR_001507) | Beijing EOEC | data set, data or information resource | Data set of 48 healthy controls from a community (student) sample from Beijing Normal University in China with 3 resting state fMRI scans each. During the first scan participants were instructed to rest with their eyes closed. The second and third resting state scan were randomized between resting with eyes open versus eyes closed. In addition this dataset contains a 64-direction DTI scan for every participant. The following data are released for every participant: * 6-minute resting state fMRI scan (R-fMRI) * MPRAGE anatomical scan, defaced to protect patient confidentiality * 64-direction diffusion tensor imaging scan (2mm isotropic) * Demographic information and information on the counterbalancing of eyes open versus eyes closed. | early adult human, resting state, fmri, diffusion tensor imaging, resting state fmri, eyes open, eyes closed, neuroimaging, mprage, image collection, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Beijing Normal University; Beijing; China has parent organization: 1000 Functional Connectomes Project |
Healthy | National Natural Science Foundation of China 30770594; National High Technology Program of China (863) 2008AA02Z405 |
Creative Commons Attribution-NonCommercial License | nlx_152810 | SCR_001507 | Beijing Eyes Open Eyes Closed Study, Beijing Normal University State Key Laboratory of Cognitive Neuroscience and Learning Eyes Open Eyes Closed Sample, Eyes Open Eyes Closed Sample, BNU Eyes Open Eyes Closed Sample | 2025-05-16 10:55:03 | 0 | |||||
|
PhaSePred Resource Report Resource Website 1+ mentions |
PhaSePred (RRID:SCR_024969) | web service, software resource, data access protocol | Web server as meta-predictor for phase-separating proteins. Displays proteome-level quantiles of different features, thus profiling PS propensity and providing crucial information for identification of candidate proteins. | meta-predictor for phase-separating proteins, proteome-level quantiles of different features, profiling PS propensity, | National Key Research and Development Program of China ; National Natural Science Foundation of China ; Clinical Medicine Plus X-Young Scholars Project of Peking University ; Fundamental Research Funds for the Central Universities |
PMID:35687670 | Free, Freely available | SCR_024969 | 2025-05-16 11:06:06 | 6 | |||||||||
|
HDOCK server Resource Report Resource Website 100+ mentions |
HDOCK server (RRID:SCR_024799) | web service, software resource, data access protocol | Web server for protein-protein and protein-DNA/RNA docking based on hybrid strategy. With input information for receptor and ligand molecules either amino acid sequences or Protein Data Bank structures, the server automatically predicts their interaction through hybrid algorithm of template-based and template-free docking. | Web server, protein-protein docking, protein-DNA/RNA docking, amino acid sequences, Protein Data Bank structures, receptor and ligand molecules input information, interaction prediction, | National Natural Science Foundation of China ; Huazhong University of Science and Technology ; National Key Research and Development Program of China |
PMID:28521030 PMID:32269383 |
Free, Freely available | SCR_024799 | HDOCK | 2025-05-16 11:06:02 | 128 | ||||||||
|
NECAT Resource Report Resource Website 1+ mentions |
NECAT (RRID:SCR_025350) | software application, source code, data analysis software, data processing software, software resource | Software error correction and de-novo assembly tool for Nanopore long noisy reads. Nanopore data assembler. | Nanopore, data assembler, Nanopore long noisy reads, de-novo assembly, error correction, | National Natural Science Foundation of China ; Guangdong Basic and Applied Basic Research Foundation ; US National Institute of Food and Agriculture ; US National Science Foundation |
PMID:33397900 | Free, Available for download, Freely available | SCR_025350 | 2025-05-16 11:06:19 | 6 | |||||||||
|
uAI Research Portal Resource Report Resource Website |
uAI Research Portal (RRID:SCR_025870) | software resource, portal, data or information resource | AI-powered integrated research platform for one-stop analysis of medical images. Provides advanced functionality such as automatic segmentation, registration, and classification for variety of application domains. Has major merits including Advanced built-in algorithms applicable to multiple imaging modalities (i.e., CT, MR, PET, DR), diseases (i.e., tumor, neurodegenerative disease, pneumonia), and applications (i.e., diagnosis, treatment planning, follow-up); Iterative deep learning-based training strategy for fast delineation of ROIs of large-scale datasets, thereby saving clinicians' time and obtaining novel and more robust models; Modular architecture with customization and extensibility, where plugins can be designed for specific purposes. | United Imaging Intelligence Inc, medical images, clinical big data management, intelligent data annotation, 3D image rendering, radiomics analysis, deep learning model training, | National Key Research and Development Program of China ; National Natural Science Foundation of China |
PMID:37492386 | Restricted | SCR_025870 | United Imaging Intelligence uAI Research Portal | 2025-05-16 11:06:35 | 0 | ||||||||
|
CB-dock2 Resource Report Resource Website 1+ mentions |
CB-dock2 (RRID:SCR_026134) | web service, software resource, data access protocol | Web server for protein-ligand blind docking, integrating cavity detection, docking and homologous template fitting. Given the three-dimensional structure of protein and ligand, can predict their binding sites and affinity for computer-aided drug discovery. | protein-ligand blind docking, integrating cavity detection, docking and homologous template fitting, predict binding sites, drug discovery, | National Natural Science Foundation of China | PMID:35609983 | Free, Freely available | SCR_026134 | 2025-05-16 11:06:38 | 7 | |||||||||
|
ROGUE Resource Report Resource Website |
ROGUE (RRID:SCR_026568) | software application, source code, data analysis software, data processing software, software resource | Software tool as entropy-based metric for assessing purity of single cell populations. Used to accurately quantify purity of identified cell clusters. | Assessing purity of single cell population, entropy-based metric, quantify purity, identified cell clusters, | Peking University ; National Natural Science Foundation of China |
PMID:32572028 | Free, Available for download, Freely available | SCR_026568 | 2025-05-16 11:06:45 | 0 |
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