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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Beijing: Eyes Open Eyes Closed Study Resource Report Resource Website |
Beijing: Eyes Open Eyes Closed Study (RRID:SCR_001507) | Beijing EOEC | data or information resource, data set | Data set of 48 healthy controls from a community (student) sample from Beijing Normal University in China with 3 resting state fMRI scans each. During the first scan participants were instructed to rest with their eyes closed. The second and third resting state scan were randomized between resting with eyes open versus eyes closed. In addition this dataset contains a 64-direction DTI scan for every participant. The following data are released for every participant: * 6-minute resting state fMRI scan (R-fMRI) * MPRAGE anatomical scan, defaced to protect patient confidentiality * 64-direction diffusion tensor imaging scan (2mm isotropic) * Demographic information and information on the counterbalancing of eyes open versus eyes closed. | early adult human, resting state, fmri, diffusion tensor imaging, resting state fmri, eyes open, eyes closed, neuroimaging, mprage, image collection, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Beijing Normal University; Beijing; China has parent organization: 1000 Functional Connectomes Project |
Healthy | National Natural Science Foundation of China 30770594; National High Technology Program of China (863) 2008AA02Z405 |
Creative Commons Attribution-NonCommercial License | nlx_152810 | SCR_001507 | Beijing Eyes Open Eyes Closed Study, Beijing Normal University State Key Laboratory of Cognitive Neuroscience and Learning Eyes Open Eyes Closed Sample, Eyes Open Eyes Closed Sample, BNU Eyes Open Eyes Closed Sample | 2026-08-03 09:31:22 | 0 | |||||
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HPEPDOCK Server Resource Report Resource Website 10+ mentions |
HPEPDOCK Server (RRID:SCR_018561) | production service resource, web service, analysis service resource, data access protocol, service resource, software resource | Web server for blind peptide protein docking based on hierarchical algorithm. Blind peptide-protein docking by fast modeling of peptide conformations and global sampling of binding orientations. | Blind peptide protein docking, peptide conformation modeling, global sampling, blind orientation, protein, modeling, docking, bio.tools |
is listed by: bio.tools is listed by: Debian |
National Key Research and Development Program of China ; National Natural Science Foundation of China ; Huazhong University of Science and Technology |
PMID:29746661 | Free, Freely available | biotools:hpepdock | https://bio.tools/hpepdock | SCR_018561 | 2026-08-03 09:37:03 | 46 | ||||||
|
SC2diseases Resource Report Resource Website 1+ mentions |
SC2diseases (RRID:SCR_019093) | production service resource, database, service resource, analysis service resource, data or information resource | Manually curated database of single cell transcriptome for human diseases. scRNA-seq database derived from numerous human studies. Provides researchers with encyclopedia of biomarkers at level of genes, cells, and diseases. | Human disease, single cell transcriptome, data, manually curated data, biomarker | National Natural Science Foundation of China | PMID:33010177 | Free, Freely available | SCR_019093 | 2026-08-03 09:37:09 | 5 | |||||||||
|
HDOCK server Resource Report Resource Website 100+ mentions |
HDOCK server (RRID:SCR_024799) | web service, data access protocol, software resource | Web server for protein-protein and protein-DNA/RNA docking based on hybrid strategy. With input information for receptor and ligand molecules either amino acid sequences or Protein Data Bank structures, the server automatically predicts their interaction through hybrid algorithm of template-based and template-free docking. | Web server, protein-protein docking, protein-DNA/RNA docking, amino acid sequences, Protein Data Bank structures, receptor and ligand molecules input information, interaction prediction, | National Natural Science Foundation of China ; Huazhong University of Science and Technology ; National Key Research and Development Program of China |
PMID:28521030 PMID:32269383 |
Free, Freely available | SCR_024799 | HDOCK | 2026-08-03 09:38:21 | 304 | ||||||||
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LLPSDB Resource Report Resource Website 1+ mentions |
LLPSDB (RRID:SCR_024966) | data or information resource, database | Database of proteins undergoing liquid–liquid phase separation in vitro. Contains LLPS related proteins together with the corresponding phase separation conditions validated by experiments. | proteins, liquid–liquid phase separation in vitro, LLPS, Liquid Liquid Phase Separation related proteins, | National Natural Science Foundation of China | DOI:10.1093/nar/gkz778 | Free, Freely available | SCR_024966 | Liquid Liquid Phase Separation DataBase | 2026-08-03 09:38:23 | 3 | ||||||||
|
PhaSePred Resource Report Resource Website 10+ mentions |
PhaSePred (RRID:SCR_024969) | web service, data access protocol, software resource | Web server as meta-predictor for phase-separating proteins. Displays proteome-level quantiles of different features, thus profiling PS propensity and providing crucial information for identification of candidate proteins. | meta-predictor for phase-separating proteins, proteome-level quantiles of different features, profiling PS propensity, | National Key Research and Development Program of China ; National Natural Science Foundation of China ; Clinical Medicine Plus X-Young Scholars Project of Peking University ; Fundamental Research Funds for the Central Universities |
PMID:35687670 | Free, Freely available | SCR_024969 | 2026-08-03 09:38:23 | 10 | |||||||||
|
RNAPhaSep Resource Report Resource Website |
RNAPhaSep (RRID:SCR_024958) | data or information resource, database | Database that collects phase separation related RNAs manually curated from publication and public databases. | phase separation related RNAs, publication and public databases data collection, manually curated, | National Key Research and Development Project of China ; National Natural Science Foundation of China ; Fujian Medical University Research Foundation of Talented Scholars ; Guangdong Basic and Applied Basic Research Foundation ; China Postdoctoral Science Foundation |
PMID:34718740 | Free, Freely available | SCR_024958 | 2026-08-03 09:38:55 | 0 | |||||||||
|
Human Potential Tumor Associated Antigen database Resource Report Resource Website 1+ mentions |
Human Potential Tumor Associated Antigen database (RRID:SCR_002938) | data or information resource, database | To accelerate the process of tumor antigen discovery, we generated a publicly available Human Potential Tumor Associated Antigen database (HPtaa) with pTAAs identified by insilico computing. 3518 potential targets have been included in the database, which is freely available to academic users. It successfully screened out 41 of 82 known Cancer-Testis antigens, 6 of 18 differentiation antigen, 2 of 2 oncofetal antigen, and 7 of 12 FDA approved cancer markers that have Gene ID, therefore will provide a good platform for identification of cancer target genes. This database utilizes expression data from various expression platforms, including carefully chosen publicly available microarray expression data, GEO SAGE data, Unigene expression data. In addition, other relevant databases required for TAA discovery such as CGAP, CCDS, gene ontology database etc, were also incorporated. In order to integrate different expression platforms together, various strategies and algorithms have been developed. Known tumor antigens are gathered from literature and serve as training sets. A total tumor specificity penalty was computed from positive clue penalty for differential expression in human cancers, the corresponding differential ratio, and normal tissue restriction penalty for each gene. We hope this database will help with the process of cancer immunome identification, thus help with improving the diagnosis and treatment of human carcinomas. | cancer, tumor, tumor-associated antigen | has parent organization: Chinese Academy of Sciences; Beijing; China | National 863 program in China 2001AA215411; National Natural Science Foundation of China 30531160045; National Natural Science Foundation of China 30570393; Ludwig Institute for Cancer Research KSP 003 |
PMID:16381942 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02987 | http://www.hptaa.org | SCR_002938 | HPtaa Database | 2026-08-03 09:31:54 | 1 | |||||
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HLAsupE Resource Report Resource Website 1+ mentions |
HLAsupE (RRID:SCR_016277) | data or information resource, database | Database of HLA supertype-specific epitopes. It describes major histocompatibility complex (MHC) molecules that bind short peptides derived from endogenous or exogenous antigens and present them onto the surface of antigen-presenting cells (APCs) for T-cell receptor (TCR) recognition. | hla, supertype, epitope, t cell, immunology, immune, mhc, antigen, histocompatibility | National Natural Science Foundation of China 91442203; National Natural Science Foundation of China 31470899; National Natural Science Foundation of China 31270788; National Science and Technology Major Project 2012ZX09103301014; 863 Project 2012AA02A407 |
PMID:27307005 | Freely available, Tutorial available | SCR_016277 | integrated database of HLA supertype specific epitopes | 2026-08-03 09:36:41 | 1 | ||||||||
|
lnc2cancer Resource Report Resource Website 10+ mentions |
lnc2cancer (RRID:SCR_023781) | data or information resource, database | Manually curated database of experimentally supported lncRNAs associated with various human cancers. Cancer long non coding RNA database. Lnc2Cancer 3.0 is updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. | Manually curated database, experimentally supported lncRNAs, human cancer, cancer long non coding RNA, lncRNA/circRNA cancer, | National High Technology Research and Development Program of China ; National Natural Science Foundation of China ; Postdoctoral Science Foundation of China ; Postdoctoral Foundation of Heilongjiang Province ; National Key R and D Program of China ; Heilongjiang Touyan Innovation Team Program ; Heilongjiang Provincial Natural Science Foundation |
PMID:26481356 PMID:33219685 |
Free, Freely available | SCR_023781 | lnc2Cancer 3.0 | 2026-08-03 09:38:13 | 17 | ||||||||
|
quarTeT Resource Report Resource Website 10+ mentions |
quarTeT (RRID:SCR_025258) | software resource, source code, web application | Web toolkit for studies of large scale T2T genomes. Collection of tools designed for T2T genome assembly and characterization, including reference guided genome assembly, ultra long sequence based gap filling, telomere identification, and de novo centromere prediction. Includes four modules: AssemblyMapper, GapFiller, TeloExplorer, and CentroMiner. Modules can be used alone or in combination with each other for T2T genome assembly and characterization. | Telomere-To-Telomere genomes studies, guided genome assembly, ultra long sequence based gap filling, telomere identification, de novo centromere prediction, large scale T2T genomes, assemble and analyse multiple high quality genomes, highly repetitive regions in genomes, | National Natural Science Foundation of China | PMID:37560017 | Free, Available for download, Freely available | https://github.com/aaranyue/quarTeT | SCR_025258 | quar Telomere-To-Telomere Toolkit | 2026-08-03 09:39:06 | 33 | |||||||
|
NECAT Resource Report Resource Website 10+ mentions |
NECAT (RRID:SCR_025350) | software application, data processing software, source code, data analysis software, software resource | Software error correction and de-novo assembly tool for Nanopore long noisy reads. Nanopore data assembler. | Nanopore, data assembler, Nanopore long noisy reads, de-novo assembly, error correction, | National Natural Science Foundation of China ; Guangdong Basic and Applied Basic Research Foundation ; US National Institute of Food and Agriculture ; US National Science Foundation |
PMID:33397900 | Free, Available for download, Freely available | SCR_025350 | 2026-08-03 09:39:08 | 13 | |||||||||
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uAI Research Portal Resource Report Resource Website 1+ mentions |
uAI Research Portal (RRID:SCR_025870) | data or information resource, software resource, portal | AI-powered integrated research platform for one-stop analysis of medical images. Provides advanced functionality such as automatic segmentation, registration, and classification for variety of application domains. Has major merits including Advanced built-in algorithms applicable to multiple imaging modalities (i.e., CT, MR, PET, DR), diseases (i.e., tumor, neurodegenerative disease, pneumonia), and applications (i.e., diagnosis, treatment planning, follow-up); Iterative deep learning-based training strategy for fast delineation of ROIs of large-scale datasets, thereby saving clinicians' time and obtaining novel and more robust models; Modular architecture with customization and extensibility, where plugins can be designed for specific purposes. | United Imaging Intelligence Inc, medical images, clinical big data management, intelligent data annotation, 3D image rendering, radiomics analysis, deep learning model training, | National Key Research and Development Program of China ; National Natural Science Foundation of China |
PMID:37492386 | Restricted | SCR_025870 | United Imaging Intelligence uAI Research Portal | 2026-08-03 09:38:39 | 1 | ||||||||
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Spatial DB Resource Report Resource Website 1+ mentions |
Spatial DB (RRID:SCR_026135) | data or information resource, database | Database for spatially resolved transcriptomes. Provides curated spatially resolved transcriptomic data from published papers, aiming to provide comprehensive and accurate resource of spatial gene expression profiles in tissues. Allows users to browse spatial gene expression profile and compare spatial gene expression profile of any two datasets generated by same or different techniques side by side. | Spatially resolved transcriptomics, gene expression profiles, positional information, disease pathology, spatial gene expression profiles in tissues, curated data, | National Natural Science Foundation of China | PMID:31713629 | Free, Freely available | SCR_026135 | 2026-08-03 09:38:53 | 5 | |||||||||
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CB-dock2 Resource Report Resource Website 50+ mentions |
CB-dock2 (RRID:SCR_026134) | web service, data access protocol, software resource | Web server for protein-ligand blind docking, integrating cavity detection, docking and homologous template fitting. Given the three-dimensional structure of protein and ligand, can predict their binding sites and affinity for computer-aided drug discovery. | protein-ligand blind docking, integrating cavity detection, docking and homologous template fitting, predict binding sites, drug discovery, | National Natural Science Foundation of China | PMID:35609983 | Free, Freely available | SCR_026134 | 2026-08-03 09:39:14 | 55 | |||||||||
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HERB Resource Report Resource Website 50+ mentions |
HERB (RRID:SCR_026468) | data or information resource, database | High-throughput experiment- and reference-guided database of traditional Chinese medicine. | traditional Chinese medicine, experiment- and reference-guided database, | National Natural Science Foundation of China ; Zhejiang Provincial Natural Science Foundation of China ; China Postdoctoral Innovative Talent Foundation |
PMID:33264402 | Free, Freely available, | SCR_026468 | 2026-08-03 09:39:17 | 78 | |||||||||
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ROGUE Resource Report Resource Website 1+ mentions |
ROGUE (RRID:SCR_026568) | software application, data processing software, source code, data analysis software, software resource | Software tool as entropy-based metric for assessing purity of single cell populations. Used to accurately quantify purity of identified cell clusters. | Assessing purity of single cell population, entropy-based metric, quantify purity, identified cell clusters, | Peking University ; National Natural Science Foundation of China |
PMID:32572028 | Free, Available for download, Freely available | SCR_026568 | 2026-08-03 09:38:57 | 1 | |||||||||
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FerrDb Resource Report Resource Website 50+ mentions |
FerrDb (RRID:SCR_026852) | data or information resource, database | Manually curated database of ferroptosis regulators and ferroptosis-disease associations. There are two secondary categories of ferroptosis regulators: (1) genes and (2) substances. Gene regulators include driver, suppressor, marker, and unclassified regulator. Substances cover range of chemical entities, including pure substances (e.g., iron, erastin) and mixtures (e.g., herbal extracts). Substance regulators include inducers and inhibitors. FerrDb V2 is updated database. | Manually curated database, ferroptosis regulators, ferroptosis-disease associations, | Guangzhou Municipal Psychiatric Disease Clinical Transformation Laboratory ; Guangzhou Municipal Key Discipline in Medicin ; National Natural Science Foundation of China |
PMID:36305834 PMID:32219413 |
Free, Freely available | SCR_026852 | FerrDb V2 | 2026-08-03 09:39:22 | 65 | ||||||||
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CSOmap Resource Report Resource Website 1+ mentions |
CSOmap (RRID:SCR_027636) | software resource, software application, source code | Software tool for reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly. Infers cellular spatial organization from scRNA-seq by modeling ligand–receptor-mediated self-assembly. It constructs 3D pseudo-space and quantifies cell–cell interactions for downstream visualization and hypothesis testing. | Infer cellular spatial organization from scRNA-seq, modeling ligand–receptor-mediated self-assembly, reconstruction of cell spatial organization, single-cell RNA sequencing data, construct 3D pseudo-space, quantify cell–cell interactions, | Peking University ; National Natural Science Foundation of China |
PMID:32541867 | Free, Available for download, Freely available | SCR_027636 | 2026-08-03 09:39:14 | 1 | |||||||||
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Cancer Treatment Response gene signature DataBase Resource Report Resource Website |
Cancer Treatment Response gene signature DataBase (RRID:SCR_027950) | CTR_DB | data or information resource, database | Data resource for clinical transcriptomes with cancer treatment response, and meanwhile supports various data analysis functions, providing insights into the molecular determinants of drug resistance. CTR-DB 2.0 is updated cancer clinical transcriptome resource, expanding primary drug resistance and newly adding acquired resistance datasets and enhancing the discovery and validation of predictive biomarkers. | clinical transcriptomes, cancer treatment response, primary drug resistance, predictive biomarkers, | National Key Research and Development Program of China ; National Natural Science Foundation of China |
PMID:39494527 | Free, Freely available, | SCR_027950 | , CTR-DB 1.0, CTR-DB 2.0 | 2026-08-03 09:39:16 | 0 |
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