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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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3D Brain Resource Report Resource Website |
3D Brain (RRID:SCR_013138) | 3D Brain | data or information resource, mobile app, narrative resource, software application, software resource, training material | iPhone and iPad app that provides a good overview of the brain and its structures allowing you to rotate and zoom around 29 interactive structures with your touch screen. Discover how each brain region functions, what happens when it is injured, and how it is involved in mental illness. Each detailed structure comes with information on functions, disorders, brain damage, case studies, and links to modern research. Compatible with iPhone, iPod touch and iPad. Requires iOS 3.0 or later. | neuroanatomy, brain, gross neuroanatomy |
is related to: Genes to Cognition Online has parent organization: Cold Spring Harbor Laboratory |
The Dana Foundation ; Hewlett Foundation |
Free | nlx_152078 | SCR_013138 | 2026-09-12 12:57:59 | 0 | |||||||
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Neuroimaging in Python Resource Report Resource Website 10+ mentions |
Neuroimaging in Python (RRID:SCR_013141) | NIPY, | community building portal, data or information resource, portal, software application, software development environment, software development tool, software resource | Community site to make brain imaging research easier that aims to build software that is clearly written, clearly explained, a good fit for the underlying ideas, and a natural home for collaboration. | brain, imaging, neuroimaging, analysis, python, fmri, fmri analysis, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Python Programming Language has parent organization: SourceForge has parent organization: University of California at Berkeley; Berkeley; USA has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; is parent organization of: Dipy is parent organization of: NiLearn is parent organization of: NIPY is parent organization of: NiBabel is parent organization of: Nipype is parent organization of: Nitime |
NIMH 5R01MH081909-02; NIBIB 1R03EB008673-01 |
PMID:21897815 | Revised BSD license | nlx_149365 | http://www.nitrc.org/projects/nipy-community http://www.nitrc.org/projects/nipype | SCR_013141 | NIPY Community | 2026-09-12 12:57:59 | 27 | ||||
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Stroketool-CT Resource Report Resource Website 1+ mentions |
Stroketool-CT (RRID:SCR_013611) | data processing software, data visualization software, software application, software resource | Stroketool-CT is a user friendly MS-Windows based software system for calculation and visualization of enhanced CT perfusion imaging data sets of the brain. It contains features such as quantitative perfusion using SVD algorithms; DICOM compatibility; rapid calculations of rCBF, MTT, rCBV, TTP,Tmax; and interactive and automatic AIF-detection. | stroke, software, system, calculation, visualization, imaging, brain, functional, perfusion, PWI, diffusion, DWI, magnetic resonance, MRI, tool | Available to the research community | nif-0000-00345 | SCR_013611 | Stroketool-CT | 2026-09-12 12:58:05 | 9 | |||||||||
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NIH Blueprint NHP Atlas Resource Report Resource Website 10+ mentions |
NIH Blueprint NHP Atlas (RRID:SCR_010559) | NHP Atlas | atlas, data or information resource, database, expression atlas, reference atlas | Atlas of gene expression in the developing rhesus macaque brain. This atlas is a free online resource with a unique set of data and tools aimed to create a developmental neuroanatomical framework for exploring the cellular and molecular architecture of the developing postnatal primate brain with direct relevance for human brain development. The atlas includes: * Microarray ** Microdissection: Fine structure transcriptional profiling across postnatal development for fine nuclear subdivisions of the prefrontal cortex, primary visual cortex, hippocampus, amygdala and ventral striatum ** Macrodissection: Gross structure transcriptional profiling across postnatal development for the same structures * ISH: ** Cellular resolution in situ hybridization image data of five major brain regions during postnatal developmental periods for genes clinically important for a variety of human neurodevelopmental disorders, including prefrontal cortex, primary visual cortex, hippocampus, amygdala and ventral striatum. ** Serial analysis of selected genes across the entire adult brain, focusing on cellular marker genes, genes with cortical area specificity and gene families important to neural function. * ISH Anatomic Search: Detailed gene expression search on the ISH data based on expert annotation * Reference Data: Developmental stage-specific reference series, consisting of magnetic resonance imaging (MRI) and Nissl histology to provide a neuroanatomical context for the gene expression data. These data and tools are designed to provide a valuable public resource for researchers and educators to explore neurodevelopment in non-human primates, and a key evolutionary link between other Web-based gene expression atlases for adult and developing mouse and human brain. | molecular neuroanatomy resource, developing brain, development, brain, gene expression, postnatal, mrna transcript, in situ hybridization, prefrontal cortex, primary visual cortex, hippocampus, amygdala, ventral striatum, dna microarray, magnetic resonance imaging, nissl, histology, brain development, developmental stage, microdissection, macrodissection, microarray, cell density, neuroanatomy, non-human primate |
is related to: Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain) has parent organization: Allen Institute for Brain Science |
Neurodevelopmental disorder | NIH Blueprint for Neuroscience Research ; NIMH contract HHSN-271-2008-0047 |
Free | nlx_37895 | SCR_010559 | NIH Blueprint Non-Human Primate Atlas | 2026-09-12 12:57:20 | 27 | |||||
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Manhattan HIV Brain Bank Resource Report Resource Website 1+ mentions |
Manhattan HIV Brain Bank (RRID:SCR_010520) | MHBB | biomaterial supply resource, brain bank, material resource, tissue bank | Biorepository of tissues and fluids relevant for the neurologic, neuropsychologic, psychiatric and neuropathologic manifestations of HIV infection, linked to medical records and an on-going clinical trial for research use by the scientific community. The MHBB conducts a longitudinal, observational study that follows a group of HIV-infected individuals who have agreed to be fluid and organ donors for the purposes of AIDS research. They are currently the largest, multidisciplinary neuroAIDS cohort in New York City, the epicenter of the US HIV epidemic. Research participants undergo regular neurologic, neuropsychologic, and psychiatric evaluations, and provide body fluid samples that are linked to clinical information. Upon their demise, study participants become organ donors. This program has supplied clinical information, tissue, and fluid samples to over 70 qualified AIDS researchers across America, Europe and Australia. In fulfilling its resource mission, the MHBB functions as part of the National NeuroAIDS Tissue Consortium (NNTC). MHBB provides a means by which people living with HIV can be engaged in the struggle to improve our knowledge about HIV infection and the damage it causes to the body. | human immunodeficiency virus, aids, body fluid, organ, clinical information, tissue, brain, liver disease, liver disorder, aids pathogenesis, clinical data |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: National NeuroAIDS Tissue Consortium has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
Human immunodeficiency virus, AIDS, Liver disease, Liver disorder | NIH | nlx_19658 | http://www.mountsinai.org/Research/Centers%20Laboratories%20and%20Programs/Manhattan%20HIV%20Brain%20Bank | SCR_010520 | 2026-09-12 12:57:20 | 1 | ||||||
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Brain Observatory Resource Report Resource Website |
Brain Observatory (RRID:SCR_010641) | Brain Observatory | biospecimen repository, data or information resource, material storage repository, portal, service resource, storage service resource, topical portal, video resource | Formerly a topical portal studying the brain which collected and imaged 1000 human brains, the Brain Observatory has partnered with the Institute for Brain and Society to build virtual laboratories that will feed directly into the database of images and knowledge created in the context of the Human Brain Library. The Brain Observatory will also host exhibits, conferences, and events aimed at promoting a heightened awareness of brain research and how its results can benefit personal brain fitness and mental health. | human, brain, visual cortex, neuroimaging | has parent organization: University of California San Diego School of Medicine; California; USA | Human immunodeficiency virus, NeuroAIDS, AIDS, Amnesia | NIMH ; NSF ; The Dana Foundation ; NEI |
Public | nlx_69083 | http://thebrainobservatory.ucsd.edu/ | SCR_010641 | The Brain Observatory | 2026-09-12 12:57:21 | 0 | ||||
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Buzsaki Lab Resource Report Resource Website 10+ mentions |
Buzsaki Lab (RRID:SCR_008020) | Buzsaki Lab | data analysis software, data or information resource, data processing software, laboratory portal, organization portal, portal, software application, software resource | Lab interested in understanding how neuronal circuitries of the brain support its cognitive capacities. Its goal is to provide rational, mechanistic explanations of cognitive functions at a descriptive level. In the lab''s view, the most promising area of cognitive faculties for scientific inquiry is memory, since it is a well-circumscribed term, can be studied in animals and substantial knowledge has accumulated on the molecular mechanisms of synaptic plasticity. Available software: * NeuroScope: NeuroScope can display local field potentials (EEG), neuronal spikes, behavioral events, as well as the position of the animal in the environment. It also features limited editing capabilities. * Klusters: Klusters is a powerful and easy-to-use cluster cutting application designed to help neurophysiologists sort action potentials from multiple neurons on groups of electrodes (e.g., tetrodes or multisite silicon probes). * KlustaKwik: KlustaKwik is a program for automatic cluster analysis, specifically designed to run fast on large data sets. * MATLAB m-files: A selection of MATLAB files developed in the lab., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | eeg, electrode, environment, funtion, animal, application, behavioral, brain, capacity, circuit, cluster, cognitive, hippocampal, hippocampus, laboratory, local field potential, mechanism, memory, molecular, neuron, neuronal, plasticity, research, scientific, spike, synaptic, tetrode |
has parent organization: Rutgers University; New Jersey; USA is parent organization of: NeuroScope |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10182 | http://osiris.rutgers.edu/frontmid/indexmid.html | SCR_008020 | Buzsaki''s Lab | 2026-09-12 12:56:58 | 15 | ||||||
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BraInSitu: A homepage for molecular neuroanatomy Resource Report Resource Website 1+ mentions |
BraInSitu: A homepage for molecular neuroanatomy (RRID:SCR_008081) | BraInSitu | atlas, data or information resource, database, experimental protocol, expression atlas, image, narrative resource | Database of detailed protocols for single and double in situ hybridization (ISH) method, probes used by Yamamori lab and others useful for studies of brain, and many photos of mammalian (mostly mouse and monkey) brains stained with various gene probes. Also includes a brain atlas of gene expression. Currently, the atlas comprises a series of un-annotated images showing the localization of a particular probe or molecule, e.g., AChE. | function, gene expression, gene, anatomical structure, brain, central nervous system, cerebral cortex, in situ hybridization, mammalian, neocortex, pcr cloning, probe, molecular neuroanatomy resource, neuroanatomy, in situ hybridization protocol | has parent organization: National Institute for Basic Biology; Okazaki; Japan | nif-0000-11633 | SCR_008081 | 2026-09-12 12:56:59 | 4 | |||||||||
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University of Washington Integrated Brain Project Resource Report Resource Website 1+ mentions |
University of Washington Integrated Brain Project (RRID:SCR_008075) | controlled vocabulary, data or information resource, ontology, software resource | The UW Integrated Brain Project is one project within the national Human Brain Project, a national multi-agency effort to develop informatics tools for managing the exploding amount of information that is accumulating about the human brain. The objective of the UW Integrated Brain Project effort is to organize and integrate distributed functional information about the brain around the structural information framework that is the long term goal of our work. This application therefore extends the utility of the Digital Anatomist Project by using it to organize non-structural information. The initial driving neuroscience problem that is being addressed is the management, visualization and analysis of cortical language mapping data. In recent years, advances in imaging technology such as PET and functional MRI have allowed researchers to observe areas of the cortex that are activated when the subject performs language tasks. These advances have greatly accelerated the amount of data available about human language, but have also emphasized the need to organize and integrate the sometimes contradictory sources of data, in order to develop theories about language organization. The hypothesis is that neuroanatomy is the common substrate on which the diverse kinds of data can be integrated. A result of the work done by this project is a set of software tools for generating a 3-D reconstruction of the patient''s own brain from MRI, for mapping functional data to this reconstruction, for normalizing individual anatomy by warping to a canonical brain atlas and by annotating data with terms from an anatomy ontology, for managing individual lab data in local laboratory information systems, for integrating and querying data across separate data management systems, and for visualizing the integrated results. Sponsors: This Human Brain Project research is funded jointly by the National Institute on Deafness and Other Communication Disorders, the National Institute of Mental Health, and the National Institute on Aging. | functional mri, anatomy, brain, imaging, neuroanatomy, neuroscience, open source license, pet, technology | Aging | nif-0000-10536 | SCR_008075 | UW Brain Project | 2026-09-12 12:56:59 | 1 | |||||||||
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Multimodal Imaging Laboratory Resource Report Resource Website |
Multimodal Imaging Laboratory (RRID:SCR_008071) | MMIL | data or information resource, laboratory portal, organization portal, portal | An interdisciplinary group of scientists and clinicians who study the human brain using a variety of imaging, recording, and computational techniques. Their primary goal is to bridge non-invasive imaging technologies to the underlying neurophysiology of brain neuronal circuits for a better understanding of healthy human brain function, and mechanisms of disruption of this function in diseases such as Alzheimer's, epilepsy and stroke. The other goal of the MMIL is to develop and apply advanced imaging techniques to understanding the human brain and its disorders. In order to ground these methodological developments in their underlying neurobiology, invasive studies in humans and animals involving optical and micro physiological measures are also performed. These methodologies are applied to understanding normal function in sleep, memory and language, development and aging, and diseases such as dementia, epilepsy and autism. | dti, eeg, epilepsy, fmri, function, aging, alzheimer's, autism, brain, dementia, development, disease, disorder, human, mechanism, memory, microphysiological, neurobiology, neuronal circuit, neurophysiology, noninvasive methodology, pet, sleep, stroke, structural mri, language, meg, structural mri, meg |
has parent organization: University of California at San Diego; California; USA is parent organization of: Pediatric Imaging Neurocognition and Genetics |
Aging | nif-0000-10521 | SCR_008071 | 2026-09-12 12:56:59 | 0 | ||||||||
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Laboratory of Molecular Neuroscience, University of Oslo Resource Report Resource Website 1+ mentions |
Laboratory of Molecular Neuroscience, University of Oslo (RRID:SCR_008097) | UiO LMN | data or information resource, portal, topical portal | A laboratory that investigates the molecular mechanisms involved in the development of acute and chronic neurodegenerative disease, with a focus on the role of glutamate excitotoxicity. It aims at unraveling the molecular basis for cell death and edema development in stroke, and explores the pathophysiology of Alzheimer's disease and temporal lobe epilepsy. The main objective of the LMN is to advance understanding of the role of glutamate, as a transmitter substance in the normal brain and as a mediator of excitotoxicity in pathological conditions such as stroke. To this end the LMN employs several vital and nonvital imaging techniques. Model systems includes organotypic slice cultures and transgenic animals. An important focus of the LMN is to explore the role of DNA damage and repair in the pathogenesis of neurodegenerative disease. LMN is also engaged in research on molecular mechanism underlying brain edema, epilepsy, and Alzheimer's disease. | epilepsy, excitotoxicity, acute, alzheimer's disease, brain, brain edema, cell death, chronic, damage, dna, glutamate, imaging, model systems, molecular, molecular mechanism, neurodegenerative disease, neuroprotective, neuroscience, repair, stroke, transmitter | has parent organization: University of Oslo; Oslo; Norway | nif-0000-11675 | SCR_008097 | University of Oslo LMN | 2026-09-12 12:57:00 | 2 | ||||||||
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MRIcro Software Resource Report Resource Website 500+ mentions |
MRIcro Software (RRID:SCR_008264) | data analysis software, data processing software, data visualization software, software application, software resource | MRIcro allows Windows and Linux computers view medical images. It is a standalone program, but includes tools to complement SPM (software that allows neuroimagers to analyze MRI, fMRI and PET images). MRIcro allows efficient viewing and exporting of brain images. In addition, it allows neuropsychologists to identify regions of interest (ROIs, e.g. lesions). MRIcro can create Analyze format headers for exporting brain images to other platforms. Some features of MRIcro are: - Converts medical images to SPM friendly Analyze format. - View Analyze format images (big or little endian). - Create Analyze format headers (big or little endian). - Create 3D regions of interest (with computed volume & intensity). - Overlap multiple regions of interest. - Rotate images to match SPM template images. - Export images to BMP, JPEG, PNG or TIF format. - Yoked images: linked viewing of multiple images (e.g. view same coordinates of PET and MRI scans). Users familiar with other Windows programs will find that this software is fairly straightforward to use. Resting the mouse cursor over a button will cause a text hint to appear over the button. However, a tutorial with a step by step guide of how to use MRIcro with SPM is available. | export, fmri, 3d, brain, intensity, lesions, medical, mri, neuroimager, neuropsychologist, pet, platform, region, software, view, volume, image |
is related to: SPM has parent organization: Georgia Institute of Technology; Georgia; USA |
nif-0000-23298 | SCR_008264 | MRIcro | 2026-09-12 12:57:01 | 910 | |||||||||
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DIADEM Challenge: DIgital reconstruction of Axonal and DEndritic Morphology (DIADEM) Software Development Competition Resource Report Resource Website 1+ mentions |
DIADEM Challenge: DIgital reconstruction of Axonal and DEndritic Morphology (DIADEM) Software Development Competition (RRID:SCR_008262) | challenge, data or information resource, meeting resource, portal, topical portal, training resource | A software development competition, the DIADEM Challenge,to benefit the scientific community by encouraging the development of better software for automating three-dimensional reconstructions of neuronal arbors. The intent of the Sponsors is to ensure that the best software submitted for the competition is made available to the scientific community within a reasonable time and on reasonable terms. No purchase is necessary to enter or win. The competition will have two rounds. As of April 10, 2009, individuals and teams may register to participate in the competition and may download sets of image stacks (Data Sets) of non-human animal brains along with three-dimensional reconstructions for some of these Data Sets for training purposes. Submissions of software, including executable programs, supporting documentation, and reconstruction files for the Data Sets, must be uploaded to the competition website no later than April 9, 2010. In order to be eligible to win the competition, the individuals and at least one member of any teams whose submissions are selected for the Final Round (Finalists) must participate in the Final Round and scientific conference. Personal participation in the Final Round and scientific conference is important for two main reasons: first, because the Finalists software will be tested at the Final Round against additional Data Sets so that the judges can select a winner or winners, and second, because the larger scientific conference, of which the Final Round will be a part, is intended to foster extensive scientific interaction among neuroscientists and computational scientists, including plenary and poster sessions to discuss challenges, solutions, and future directions. There are 5 datasets, all of which have to be reconstructed for the qualifier phase. Once you have registered your group, dataset download information will be sent to you via E-mail. The 5 datasets are: - Cerebellar Climbing Fibers - Hippocampal CA3 Interneuron - Neocortical Layer 6 Axons - Neuromuscular Projection Fibers - Olfactory Projection Fibers Sponsors: The sponsors of this competition are: Allen Institute for Brain Science, Seattle, Washington; Howard Hughes Medical Institute (HHMI), Chevy Chase, Maryland; and Krasnow Institute for Advanced Study, George Mason University, Fairfax, Virginia. | fiber, animal, automating, axon, axonal, brain, cerebellar, challenge, competition, computational, conference, data set, dendritic, development, hippocampal, interneuron, morphology, neocortical, neuromuscular, neuronal, neuroscientist, non-human, olfactory, program, reconstruction, scientific conference, scientist, software, three-dimensional, image | has parent organization: Howard Hughes Medical Institute | nif-0000-23194 | SCR_008262 | DIADAM Challenge | 2026-09-12 12:57:01 | 4 | |||||||||
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Institute of Neuroinformatics Resource Report Resource Website 1+ mentions |
Institute of Neuroinformatics (RRID:SCR_008331) | institution | The mission of the Institute is to discover the key principles by which brains work and to implement these in artificial systems that interact intelligently with the real world. The Institute of Neuroinformatics is built of many people covering a wide range of disciplines and research areas. The major research projects and areas are listed below. - Behavior and Cognition: At the Institute of Neuroinformatics researchers investigate in Behavior and Cognition on various levels, ranging from neuronal circuit models of learning and adaptation over psychophysical experiments for color constancy up to modeling complex behavioral tasks such as exploration and goal-directed navigation. - Computation in Neural Circuits: By examining the brains of cats, rats and monkeys, and by making simulations of the cortex, INI hopes to learn how this circuit performs such widely different tasks. This knowledge might lead to advances in how computers are designed, and will certainly lead to advances in the subtlety and power of medical neuroscience. - Neurotechnologies: INI aims to harness the principles of biological computation, which can be expected to have a major impact on the technology market as autonomous intelligence pervades equipment, vehicles, buildings, utilities and clothing. Sponsors: INI is supported by European Union (EU), Gerbert Ruf Stiftung, Neuroscience Center (ZNZ), Swiss Confederation (KTI), Swiss Federal Institute of Technology Zurich (ETH), Swiss National Science Foundation (SNF), University of Zurich (UZH), and VW Stiftung | adaptation, artificial system, autonomous, behavior, biological, brain, cat, circuit, cognition, color, computation, constancy, cortex, intelligence, learning, medical, model, monkey, neural, neuroinformatics, neuronal, neuroscience, neurotechnology, psychophysical, rat, researcher, simulation, technology | has parent organization: University of Zurich; Zurich; Switzerland | nif-0000-24788 | SCR_008331 | INI | 2026-09-12 12:57:02 | 5 | |||||||||
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Stanford/VA Aging Clinical Research Center Resource Report Resource Website 1+ mentions |
Stanford/VA Aging Clinical Research Center (RRID:SCR_008678) | ACRC | biomaterial supply resource, brain bank, material resource, tissue bank | Portal for gerontology research with a variety of clinical, research and educational programs, with the aim of improving the lives of those affected by Alzheimer's Disease and memory losses associated with normal aging. The Center investigates the nature of Alzheimer's Disease, its progression over time, its response to treatments, and problems patients and caregivers experience in dealing with the changes that occur. It also conducts studies that look at changes that occur over the course of normal aging and have a Normal Aging Brain Donor Program. The Aging Clinical Research Center puts out a newsletter that showcases various projects and includes informative articles on dementia. | gerontology, alzheimer's disease, memory loss, normal aging, dementia, late adult human, post-traumatic stress disorder, sleep disorder, brain tissue, tissue, brain, depressive disorder, late adult human, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Stanford University School of Medicine; California; USA is parent organization of: Geriatric Depression Scale is parent organization of: Signal Detection Software for Receiver Operator Characteristics is parent organization of: Geriatric Psychiatry Knowledge Test |
Aging, Alzheimer's disease, Memory loss, Dementia | NIA ; United States Department of Veterans Affairs |
Public, Available to the research community | nlx_143944 | http://alzheimer.stanford.edu | SCR_008678 | Stanford/VA ACRC | 2026-09-12 12:57:07 | 1 | ||||
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Neuroanatomy at UBC Resource Report Resource Website 1+ mentions |
Neuroanatomy at UBC (RRID:SCR_008744) | Neuroanatomy at UBC | atlas, d spatial image, data or information resource, narrative resource, training material, video resource | The WEB ATLAS contains photographs of dissected brains showing important structures. The diagrams folder contains drawings showing functionally important parts of the brain as well as drawings of dissections adapted from C.G. Smith. We are particularly pleased to make Nan Cheney''s medical illustrations of the brain and the head available. The STROKE MODEL portion of the website has syndromes associated with strokes of different vessels of the brain as well as extensive diagrams and tables about the vessels of the brain. The 3D RECONSTRUCTIONS featured on this website were made from MRI scans through the brain - where indicated the source material was from the NIH Visible Human Project. The website will also contain material important for the neuroanatomy labs for med students at UBC. Weekly quizzes will help you keep up with studying the material, the podcasts will help you review material presented in the labs, and the weekly wikis will help you share information with your peers. | mri, stroke, dissection, gross anatomy, educational materials, teaching resource, brain, neuroanatomy, coronal, coronal section, cerebral artery, behavior, cranial nerve, micrograph | has parent organization: University of British Columbia; British Columbia; Canada | NIH | nlx_143865 | SCR_008744 | UBC Neuroanatomy | 2026-09-12 12:57:08 | 2 | |||||||
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BECA Resource Report Resource Website 1+ mentions |
BECA (RRID:SCR_015846) | BECA | data processing software, data visualization software, image analysis software, software application, software resource | Visualization and analysis software for interactive visual exploration and mining of fiber-tracts and brain networks with their genetic determinants and functional outcomes. BECA includes an fMRI and Diseases Analysis version as well as a Genome Explorer version. | visual exploration, brain, neuroscience, network, genetic determinant, fmri, neuroimaging, genome | has parent organization: Indiana University School of Medicine; Indiana; USA | NIA P30 AG10133; NIA R01 AG19771; NIA RC2 AG036535; NIA U01 AG024904; NIBIB R01 EB022574; NLM R01 LM011360; NSF IIS-1117335 |
PMID:27171688 | Free, Available for download | SCR_015846 | Brain Explorer for Connectome Analysis (BECA), BECA - Brain Explorer for Connectome Analysis | 2026-09-12 12:58:31 | 5 | ||||||
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BICCN Resource Report Resource Website 100+ mentions |
BICCN (RRID:SCR_015820) | BICCN | consortium, data or information resource, organization portal, portal | Consortium for the cell census in the brain. Integrated network of data generating centers, data archives, and data standards developers, with the goal of systematic multimodal brain cell type profiling and characterization. Emphasis of the BICCN is on the whole mouse brain with demonstration of prototype feasibility for human and nonhuman primate brains. | cell census, neuroscience, brain, brain initiative cell census network, whole mouse brain, |
uses: QuickNII uses: HistoloZee uses: CellLocator uses: Semi-Manual Alignment to Reference Templates uses: LoomPy uses: Cytosplore Viewer uses: Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain) uses: Blue Brain Cell Atlas uses: Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas uses: Hippocampome.org uses: Neuron Phenotype Ontology uses: Brain Image Library uses: Distributed Archives for Neurophysiology Data Integration uses: NeuroMorpho.Org uses: Azimuth uses: Brain Observatory Storage Service and Database (BossDB) uses: Optimus Pipeline uses: scATAC Pipeline uses: Smart-seq2 Single Nucleus Multi Sample Pipeline uses: CEMBA MethylC Seq Pipeline uses: Brain Architecture Project uses: Single Cell Portal uses: MorphoHub uses: Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas uses: Mouse Connectome Project uses: Allen Mouse Brain Reference Atlas uses: Allen Mouse Brain Common Coordinate Framework uses: Allen Human Reference Atlas, 3D, 2020 uses: NeMO Analytics uses: ANTS - Advanced Normalization ToolS uses: CloudReg uses: Brainome portal uses: CATlas uses: MetaNeighbor uses: Cell Annotation Platform uses: cellxgene uses: Neuroglancer uses: Vaa3D uses: QuickNII and VisuAlign uses: Hi5App uses: CloudVolume uses: neuroXiv uses: Brain Data Standards Ontology uses: Pittsburgh Supercomputing Center uses: Molecular Biosensor and Imaging Center uses: Generative Diffeomorphic Mapping uses: NIH NeuroBioBank uses: NeMOarchive lists: ccf_streamlines is related to: Mouse Connectome Project is related to: BarensLab Mini-Atlas is related to: Cumulus is related to: Pegasus is related to: Cirrocumulus is related to: Gene functional conservation across cell types and species is related to: BRAIN Initiative Cell Atlas Network is related to: ATAC Pipeline is related to: Slide-seq Pipeline is related to: Brain Knowledge Platform has parent organization: Allen Institute has parent organization: Allen Institute for Brain Science provides: mBrainAligner provides: BICCN Cell Registry provides: Cell Type Knowledge Explorer provides: Epiviz has organization facet: BICCN Anatomy and Morphology Project has organization facet: Cell Type Knowledge Explorer has organization facet: mBrainAligner has organization facet: Terra has organization facet: Allen Brain Cell Atlas has organization facet: Multiome Pipeline has organization facet: Allen Software Development Kit has organization facet: BICCN Imaging and analysis Techniques to Construct Cell Census Atlas of Human Brain has organization facet: Allen Brain Map BICCN Data Catalog has organization facet: snm3C Pipeline has organization facet: Paired-Tag Pipeline has organization facet: BuildIndices has organization facet: MapMyCells |
NIMH U19 MH114821; NIMH U19 MH114830; NIMH U19 MH114831 |
PMID:37390046 | Restricted | SCR_017266 | SCR_015820 | BICCN 2.0, BRAIN Initiative Cell Census Network, BRAIN Initiative Cell Census Network (BICCN) | 2026-09-12 12:58:31 | 234 | |||||
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UK Brain Expression Consortium Resource Report Resource Website 1+ mentions |
UK Brain Expression Consortium (RRID:SCR_015889) | UKBEC | consortium, data or information resource, organization portal, portal | Consortium studying the regulation and alternative splicing of gene expression in multiple tissues from human brains. The UKBEC dataset comprises of brains from individuals free of neurodegenerative disorders. | neurodegenerative, brain, disorder, mrna, dna, eqtl, snp, gene, visualization, expression | is parent organization of: Braineac | SCR_015889 | 2026-09-12 12:58:32 | 3 | ||||||||||
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ABCDreport Resource Report Resource Website |
ABCDreport (RRID:SCR_016030) | data analysis software, data processing software, software application, software resource | Software application as a simple system to review study progress. Used in ABCD study. | system, simple, review, study, progress, development, adolescence, brain, cognitive, report | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016030 | 2026-09-12 12:58:34 | 0 |
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