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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
EssSubgraph
 
Resource Report
Resource Website
1+ mentions
EssSubgraph (RRID:SCR_027354) EssSubgraph algorithm resource, software resource A model algorithm that integrates omics data and network data to predict essential genes. Biomarker, essential gene prediction, GNN Cancer National Institutes of Health R35GM149531;
National Science Foundation 2243562
DOI:10.1101/2025.07.21.665218 Integrating omics data and protein-protein interaction network data to predict essential genes. https://github.com/wenmm/EssSubgraph/tree/main SCR_027354 2026-09-12 01:05:25 1
wikiCancer
 
Resource Report
Resource Website
1+ mentions
wikiCancer (RRID:SCR_001824) wikiCancer data or information resource, disease-related portal, patient-support portal, portal, topical portal A place where people connected to cancer can share real-life experiences -- fears, insights, stories, and advice. Adding perspectives is easy, and every contribution builds the site into a more valuable and unique community resource. Content, resources, and support on wikiCancer: * Just been diagnosed with cancer? * Living with cancer * For cancer survivors * How to support someone with cancer * Connect with other cancer patients, survivors, family and caregivers wiki Cancer Free, Freely available nlx_15428 SCR_001824 2026-09-12 12:55:32 2
JISTIC
 
Resource Report
Resource Website
1+ mentions
JISTIC (RRID:SCR_003482) JISTIC software resource Software tool for analyzing datasets of genome-wide copy number variation to identify driver aberrations in cancer. copy number variation, candidate gene, gene is listed by: OMICtools
has parent organization: Columbia University; New York; USA
Cancer PMID:20398270 Free, Public OMICS_02297 SCR_003482 2026-09-12 12:55:59 2
Lyonbiopole
 
Resource Report
Resource Website
Lyonbiopole (RRID:SCR_003733) Lyonbiopole data or information resource, funding resource, organization portal, portal A worldwide competitiveness cluster centered on pharmaceutical activities including the fight against human and animal infectious diseases and cancers. Designed as a tool interface and public / private approximation, the division has implemented measures to encourage collaborative R & D, help in setting up projects and find funding, increase strategic and financial partnerships for economic development and international companies, provide access to reception areas, technological shared platforms such as the Infectious Diseases Center Lyonbiop��le. It aims to strengthen the competitiveness of the sector health and the attractiveness of the Rh��ne-Alpes area, mainly on the Lyon-Grenoble axis. (adapted from the translated Wikipedia) vaccine, diagnostic, pharmaceutical, drug, prevention, treatment Infectious disease, Cancer nlx_157924 SCR_003733 Lyonbiop��le, Lyon Biopole 2026-09-12 12:56:01 0
Structural Genomics Consortium
 
Resource Report
Resource Website
50+ mentions
Structural Genomics Consortium (RRID:SCR_003890) SGC consortium, data or information resource, organization portal, portal Charity registered in United Kingdom whose mission is to accelerate research in new areas of human biology and drug discovery.Not for profit, public-private partnership that carries out basic science of relevance to drug discovery whose core mandate is to determine 3D structures on large scale and cost effectively targeting human proteins of biomedical importance and proteins from human parasites that represent potential drug targets. basic science, drug discovery, drug, structural genomics, genomics, 3d structure, protein, human parasite, drug target, structure, human protein, protocol, phylogenetic tree, histone tail, high-throughput protein crystallization, lex bubbling system, reagent, epigenetic probe, antibody, vector, plasmid, construct uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
uses: Addgene
uses: GenBank
is related to: AbbVie
is related to: Canada Foundation for Innovation
is related to: Canadian Institutes of Health Research
is related to: Genome Canada
is related to: Janssen Research and Development
is related to: Ontario Ministry of Economic Development Employment and Infrastructure
is related to: Pfizer Animal Genetics
is related to: Wellcome Trust
has parent organization: University of Oxford; Oxford; United Kingdom
has parent organization: University of Toronto; Ontario; Canada
Cancer, Diabetes, Obesity, Psychiatric disorder, Altzheimer AbbVie ;
Boehringer Ingelheim ;
Canada Foundation for Innovation ;
Canadian Institutes of Health Research ;
Genome Canada ;
GlaxoSmithKline ;
Janssen ;
Lilly Canada ;
Novartis Research Foundation ;
Ontario Ministry of Economic Development Employment and Infrastructure ;
Pfizer ;
Takeda ;
Wellcome Trust
Restricted nlx_158220 SCR_003890 Structural Genomics Consortium 2026-09-12 12:56:04 65
Hybrigenics
 
Resource Report
Resource Website
10+ mentions
Hybrigenics (RRID:SCR_003822) commercial organization A bio-pharmaceutical company with a focus on research and development of new targets & therapies against proliferative diseases. Its current development program is based on inecalcitol, a vitamin D receptor agonist being studied in three potential indications: * alone in chronic lymphocytic leukaemia * in combination with imatinib in chronic myeloid leukaemia * in prostate cancer, for use with current standards of care Hybrigenics'' research program investigates the action of enzymes called Deubiquitinating Enzymes (DUBs) in the recycling of onco-proteins and the utility of proprietary patented DUB inhibitors against various cancer indications. Hybrigenics Services, a Hybrigenics subsidiary, markets very specialized scientific services to researchers in all areas of life sciences who want to identify, validate and inhibit protein interactions in animal, plant or microbiological cells. enzyme, proteomic, protein interaction network, protein interaction is related to: AgedBrainSYSBIO Lymphocytic leukaemia, Myeloid leukaemia, Prostate cancer, Cancer nlx_158127 SCR_003822 2026-09-12 12:56:03 16
Amorfix
 
Resource Report
Resource Website
1+ mentions
Amorfix (RRID:SCR_003783) AMF commercial organization Product development company focused on therapeutic products and diagnostic devices targeting misfolded protein diseases. On July, 2015 the company name was changed to ProMIS Neurosciences, Inc. diagnostic, therapy, alzheimer, protein, misfolded protein disease Alzheimer's disease, Amyotrophic Lateral Sclerosis, Cancer Crossref funder ID: 100007611, nlx_158072, grid.422608.a https://ror.org/045rtab03 SCR_003783 Amorfix Life Science, Amorfix Life Sciences Ltd., Amorfix Life Sciences, ProMIS Neurosciences 2026-09-12 12:56:02 2
Capital Biosciences
 
Resource Report
Resource Website
1+ mentions
Capital Biosciences (RRID:SCR_004879) commercial organization Biological products including Cell Immortalization Products, Clinically Defined Human Tissue, cDNA ORF Clones, Premade Adenoviruses, Purified Proteins, Viral Expression Systems and others as well as services like Custom Recombinant Adenovirus Production, Custom Recombinant Lentivirus Production, Protein Detection and Quantification and Stable Cell Line Production for academic and governmental research institutes, pharmaceutical and biotechnology industry. Capital Biosciences offers most types of human tissues, normal and diseased, with extensive clinical history and follow up information. Standard specimen format: Snap-frozen(flash-frozen), Formalin fixed and paraffin embedded (FFPE) tissues, Blood and blood products, Bone marrow, Total RNA, Genomic DNA, Total Proteins, Primary cell cultures, Viable frozen tissue. Tumor tissue samples include: Bladder cancer, Glioblastoma, Medulloblastoma, Breast Carcinoma, Cervical Cancer, Colorectal Cancer, Endometrial Cancer, Esophageal Cancer, Head and Neck (H&N) Carcinoma, Hepatocellular Carcinoma (HCC), Hodgkin's lymphoma, Kidney, Renal Cell Carcinoma, Lung Cancer, Non-Small Cell (NCSLC), Lung Cancer, Small Cell (SCLC), Melanoma, Mesothelioma, non-Hodgkin's Lymphoma, Ovarian Adenocarcinoma, Pancreatic Cancer, Prostate Cancer, Stomach Cancer. cell immortalization, clinical, tissue, cdna orf clone, premade adenovirus, purified protein, viral expression, recombinant adenovirus, recombinant lentivirus, protein, detection, quantification, cell line, disease, formalin fixed and paraffin embedded, frozen, tissue, blood, blood product, bone marrow, rna, dna, protein, cell culture, tumor tissue is listed by: One Mind Biospecimen Bank Listing Normal, Cancer, Tumor, Bladder cancer, Glioblastoma, Medulloblastoma, Breast Carcinoma, Cervical Cancer, Colorectal Cancer, Endometrial Cancer, Esophageal Cancer, Head Carcinoma, Neck Carcinoma, Hepatocellular Carcinoma, Hodgkin's lymphoma, Kidney, Renal Cell Carcinoma, Lung Cancer, Non-Small Cell, Lung Cancer, Small Cell, Melanoma, Mesothelioma, Non-Hodgkin's Lymphoma, Ovarian Adenocarcinoma, Pancreatic Cancer, Prostate Cancer, Stomach Cancer nlx_85333 http://www.capitalbiosciences.com/category/show/tissue-human-clinically-defined.html SCR_004879 Capital Biosciences: innovative solutions for life sciences, Capital Biosciences Inc. 2026-09-12 12:56:18 2
Southeastern Brain Tumor Foundation
 
Resource Report
Resource Website
Southeastern Brain Tumor Foundation (RRID:SCR_004768) SBTF institution Founded in 1995, the Southeastern Brain Tumor Foundation (SBTF), a 501c3 not-for-profit charitable foundation, is devoted to improve the quality of life for brain tumor patients and their families. By offering information, education and support services, we aspire to instill hope, knowledge and comfort to all involved. The Southeastern Brain Tumor Foundation also raises funds for research and medical personnel so that a cure can be found. For over a decade, the SBTF has become a well-known fundraising entity supporting critical, cutting edge brain tumor research at major medical centers in the Southeast. Our annual Race for Research held in Atlanta, Georgia each summer, is our main fundraising event popular throughout Atlanta and the surrounding metropolitan area and has funded over $1.2 million dollars in research grants to leading researchers at major medical centers throughout the Southeast over the past decade. We are proud of our dedicated, all volunteer Board of Directors who meet monthly. Our Board is a diverse group comprised of individuals who''ve been touched by brain tumors in many different ways. Ranging from patients and family members to healthcare professionals; we are all committed to promoting the awareness of brain tumors in the community, communicating with patients and families and raising critical funds for research grants furthering advancements in the treatment of brain tumors. Our monthly support group, lead by a nurse practitioner, welcomes patients and their families to sit side by side with each other, share their experiences, communicate and receive support. As a neurosurgeon-scientist focused on the treatment of patients with brain tumors, I am committed to advancing the mission of SBTF forward in the fight against brain tumors. Our ability to serve the brain tumor community is dependent on each of you. Whether you support us with a financial donation in our fundraising efforts or with your time as a volunteer, each of you are a vital and integral part of our success and we thank you. brain, tumor Cancer, Brain cancer, Brain tumor Crossref funder ID: 100003421, ISNI: 0000 0004 5902 7216, grid.481206.9, nlx_143897 https://ror.org/01v0qv381 SCR_004768 2026-09-12 12:56:16 0
VirusSeq
 
Resource Report
Resource Website
10+ mentions
VirusSeq (RRID:SCR_005206) VirusSeq software resource An algorithmic software tool for detecting known viruses and their integration sites using next-generation sequencing of human cancer tissue. VirusSeq takes FASTQ files (paired-end reads) as input. next-generation sequencing, virus, integration site, cancer tissue, genome, rna-seq, whole genome sequencing, fastq, paired-end read, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: University of Texas MD Anderson Cancer Center
Cancer OMICS_00227, biotools:virusseq https://bio.tools/virusseq SCR_005206 2026-09-12 12:56:22 23
SnpEff
 
Resource Report
Resource Website
5000+ mentions
SnpEff (RRID:SCR_005191) SnpEff software resource Genetic variant annotation and effect prediction software toolbox that annotates and predicts effects of variants on genes (such as amino acid changes). By using standards, such as VCF, SnpEff makes it easy to integrate with other programs. genome, genetic variant, annotation, effect, variant, gene, cancer variant, gatk, hgsv, single nucleotide polymorphisms, genome sequence, java, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
is related to: Galaxy
is related to: GATK
has parent organization: SourceForge
has parent organization: Wayne State University; Michigan; USA
works with: SnpSift
Cancer PMID:22728672 Free, Freely available biotools:snpeff, OMICS_00186 https://bio.tools/snpeff, https://sources.debian.org/src/snpeff/ SCR_005191 SnpEff - Genetic variant annotation and effect prediction toolbox 2026-09-12 12:56:22 5640
SomaticSniper
 
Resource Report
Resource Website
100+ mentions
SomaticSniper (RRID:SCR_005108) SomaticSniper software resource Software program to identify single nucleotide positions that are different between tumor and normal (or, in theory, any two bam files). It takes a tumor bam and a normal bam and compares the two to determine the differences. It outputs a file in a format very similar to Samtools consensus format. It uses the genotype likelihood model of MAQ (as implemented in Samtools) and then calculates the probability that the tumor and normal genotypes are different. This probability is reported as a somatic score. The somatic score is the Phred-scaled probability (between 0 to 255) that the Tumor and Normal genotypes are not different where 0 means there is no probability that the genotypes are different and 255 means there is a probability of 1 ? 10(255/-10) that the genotypes are different between tumor and normal. This is consistent with how the SAM format reports such probabilities. It is currently available as source code via github or as a Debian APT package. is listed by: OMICtools
has parent organization: Washington University in St. Louis; Missouri; USA
Cancer, Tumor, Normal PMID:22155872 Acknowledgement requested OMICS_00092 SCR_005108 2026-09-12 12:56:21 152
SomaticIndelDetector
 
Resource Report
Resource Website
50+ mentions
SomaticIndelDetector (RRID:SCR_005107) SomaticIndelDetector software resource Tool for calling indels in Tumor-Normal paired sample mode. cancer-specific variant discovery tool, variant, tumor, normal, bam, indel is listed by: OMICtools
has parent organization: Broad Institute
Cancer, Tumor, Normal OMICS_00091 SCR_005107 2026-09-12 12:56:21 82
Oklahoma Medical Research Foundation
 
Resource Report
Resource Website
50+ mentions
Oklahoma Medical Research Foundation (RRID:SCR_005287) OMRF institution A biomedical research institute that aims to understand and develop more effective treatments for human disease, focusing on critical research areas such as heart disease, cancer, lupus and Alzheimer's disease. human disease, cardiovascular disease, cancer, lupus, alzheimer’s disease, treatment, biomedical research institute is parent organization of: C. elegans Gene Knockout Consortium
is parent organization of: Oklahoma Medical Research Foundation OMRF Clinical Genomics Center Core Facility
Heart disease, Cancer, Lupus, Alzheimer's disease Public grid.274264.1, ISNI: 0000 0000 8527 6890, Wikidata: Q7082264, nlx_144327, Crossref funder ID: 100008907 https://ror.org/035z6xf33 SCR_005287 2026-09-12 12:56:24 61
University of Rochester Program for Brain Tumors and Spinal Tumors
 
Resource Report
Resource Website
University of Rochester Program for Brain Tumors and Spinal Tumors (RRID:SCR_005343) URMC Program for Brain and Spinal Tumors, biomaterial supply resource, brain bank, material resource, tissue bank Collaborative neuro-oncology research program with a tissue repository (tumor bank) containing a wide range of clinical specimens, which they make available to researchers in order to study the effects of new drugs on a large number and wide range of tumor specimens. They provide highly coordinated, complex care in neurosurgery, radiation oncology, medical oncology, and neurology to patients afflicted with tumors of the brain and spine by combining the newest technologies and treatments available anywhere in the world. The program is formed from a multidisciplinary group with a goal of helping patients navigate the complex issues surrounding brain and spinal cancer care. The researchers are working to increase the number of targets that could be considered for anti-angiogenesis therapy. Many of their studies focus on the blood vessel cells (endothelial cells) themselves, which, unlike tumor cells, rarely mutate and so might be less likely to become resistant to therapy and are also more easily reached through the bloodstream. Their researchers are also attempting to better understand the changes in the blood-brain barrier (BBB) that are associated with fluid accumulation and brain swelling (edema) in neuro-oncology patients. Normal brain tissue is shielded from the rest of the body by the BBB. This barrier is composed of very tight blood vessels that prevent most substances from entering the brain. Brain tumors have a leaky BBB ����?? this feature can be used to identify tumors on MRI scans. They have identified specific molecules that appear to be associated with the leaky, abnormal vessels while the normal blood vessels with intact BBB produce these molecules at very low levels or not at all. Inhibiting the function of these molecules may help control or prevent disruption of the BBB and limit cerebral edema in brain tumor patients, as well as patients suffering from stroke or traumatic brain injury. brain tissue, brain, tissue, spine, spinal tumor, brain tumor, tumor, cancer, normal control, clinical trial, treatment, acoustic neuroma, anaplastic astrocytoma, brain metastases, brain stem glioma, chordoma, cns lymphoma, craniopharyngioma, ependymoma, gliomatosis cerebri, glioblastoma, low grade glioma, meningioma, medulloblastoma, oligodendroglioma, pineal tumor, pilocytic astrocytoma, pituitary adenoma, premature neuroectodermal tumor, oncology, neurooncology, stroke, traumatic brain injury, cerebral edema is listed by: One Mind Biospecimen Bank Listing Tumor, Brain tumor, Cancer, Spinal tumor, Normal control Available to researchers - not clear if internally or if provide specimens to the public nlx_144398 http://www.urmc.rochester.edu/neurosurgery/neurooncology/overview/research/ SCR_005343 University of Rochester Brain Tumor and Spinal Tumor Program 2026-09-12 12:56:24 0
UCSF Helen Diller Family Comprehensive Cancer Center Biostatistics Core
 
Resource Report
Resource Website
UCSF Helen Diller Family Comprehensive Cancer Center Biostatistics Core (RRID:SCR_005701) UCSF Helen Diller Family Comprehensive Cancer Center Biostatistics Core analysis service resource, data analysis service, production service resource, service resource, training service resource The Biostatistics Core provides statistical support for cancer-related research at UCSF, focusing particulary on applications in clinical trials and population studies. The Computational Biology Core supports applications to genomics, genetics and molecular biology. Core faculty have expertise in study design, protocol and proposal development and review, data analysis, and publication of results. Support for Cancer Center investigators participating in established Site Committees is typically handled by the faculty member assigned to that committee. Other requests can be directed to the consulting service request page maintained by the UCSF Clinical & Translational Science Institute (CTSI). These requests will then be assigned to a Core faculty member. Basic consulting services are generally provided free of charge to Cancer Center Members. Members requiring frequent assistance are encouraged to provide regular salary support to a Core statistician when possible to support more extensive requests and for long-term projects. Services: * Study Design * Guidance on Study Conduct * Data Analysis and Reporting of Study Results * Teaching resources has parent organization: UCSF Helen Diller Family Comprehensive Cancer Center
is parent organization of: EGAN: Exploratory Gene Association Networks
Cancer nlx_149150 http://cancer.ucsf.edu/cores/biostatistics/index.php SCR_005701 UCSF Helen Diller Family Comprehensive Cancer Center Biostatistics Computational Biology Core, UCSF Helen Diller Family Comprehensive Cancer Center Biostatistics and Computational Biology Core 2026-09-12 12:56:30 0
ChemoCentryx
 
Resource Report
Resource Website
10+ mentions
ChemoCentryx (RRID:SCR_003976) commercial organization A biopharmaceutical company focused exclusively on discovering, developing and commercializing orally-administered therapeutics to treat autoimmune diseases, inflammatory disorders and cancer. Each drug candidate is a small molecule designed to target a specific chemokine or chemo-attractant receptor, thereby blocking the inflammatory response driven by that particular chemokine while leaving the rest of the immune system unaffected., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. biopharmaceutical, oral administration, medicine, small molecule, chemokine, chemo-attractant receptor, clinical, drug, oral drug is related to: Kidney Health Initiative Autoimmune disease, Inflammatory disorder, Cancer THIS RESOURCE IS NO LONGER IN SERVICE nlx_158383, grid.452218.8, ISNI: 0000 0004 0408 7502 https://ror.org/04gp12571 SCR_003976 ChemoCentryx Inc, ChemoCentryx Inc. 2026-09-12 12:56:06 43
C. R. Bard
 
Resource Report
Resource Website
1+ mentions
C. R. Bard (RRID:SCR_003975) BARD, BCR commercial organization A multinational developer, manufacturer, and marketer of medical technologies specializing in the manufacture of vascular, urology, oncology and surgical specialty products. BARD pioneered the development of single-patient-use medical products for hospital procedures; today BARD is dedicated to pursuing technological innovations that offer superior clinical benefits while helping to reduce overall costs. Bard is perhaps best known for having introduced the Foley catheter. (Adapted from Wikipedia) medical equipment, vascular, urology, oncology, surgical, medical technology, medical, clinical is related to: Kidney Health Initiative Cancer nlx_158382 SCR_003975 C. R. Bard Inc., C.R. Bard Inc., C. R. Bard Inc, CR Bard, C.R. Bard Inc, C.R. Bard, CR Bard Inc. 2026-09-12 12:56:06 2
Centre for Genomics and Oncological Research
 
Resource Report
Resource Website
Centre for Genomics and Oncological Research (RRID:SCR_003920) GENYO institution Center for excellence research in genomic medicine, focusing on the comprehensive study and understanding of the genetic basis of human diseases in general, placing special emphasis on cancer and its genetic disorders related to inheritance. GENYO was created as a multidisciplinary research space, where different professionals from the healthcare, university and business areas interact, making it possible to generate new systems to diagnose, prevent and treat diseases based on the joint and coordinated application of first-rate knowledge in the different areas of genetics. The center is the benchmark center of the Andalusian Program for Research in Clinical Genetics and Genomic Medicine, a program which, together with those of Cell Therapy and Regenerative Medicine, and Nanomedicine have the main objective of supporting and fostering translational research in Advanced Therapies. The activities performed within these three research programs are developed in coordination with the Andalusian Initiative for Advanced Therapies (IATA), an initiative of the Andalusian Government promoted by the Regional Ministries of Health and Innovation, Science and Enterprise. genomic medicine, genomic, oncology, pharmacogenomics, inheritance, genetics is related to: PRECISESADS
has parent organization: University of Granada; Granada; Spain
has parent organization: Progress and Health Foundation; Seville; Spain
is parent organization of: PRECISESADS
Cancer, Genetic disorder grid.470860.d, Crossref funder ID: 501100007321, ISNI: 0000 0004 4677 7069, nlx_158281 https://ror.org/04hr99439 SCR_003920 Pfizer-University of Granada-Junta de Andaluc??a Centre for Genomics and Oncological Research (GENYO), Pfizer-University of Granada-Junta de Andaluc??a Centre for Genomics and Oncological Research 2026-09-12 12:56:05 0
Institute of Cancer Research
 
Resource Report
Resource Website
10+ mentions
Institute of Cancer Research (RRID:SCR_003912) ICR institution Academic cancer research center, a postgrad college, and a charity in the United Kingdom that is making discoveries that defeat cancer. With their partners The Royal Marsden NHS Foundation Trust they form the largest comprehensive cancer center in Europe and perform high quality and original basic research and translational studies, with the aim of developing better treatments for the benefit of cancer patients worldwide. The ICR offers comprehensive, modern facilities for research and studentships supported by the Wellcome Trust, MRC, CRUK and EPSRC and the ICR''s own resources which are awarded on a competitive basis. The ICR offers postgraduate research degrees (MPhil, PhD and MD (Res)) and a modular postgraduate taught degree in oncology aimed at clinicians undertaking specialist training in the field of Clinical or Medical Oncology leading to a Postgraduate Certificate, Postgraduate Diploma or MSc in Oncology. clinical, medical, oncology is related to: PREDECT
has parent organization: University of London; London; United Kingdom
is parent organization of: FLIGHT
is parent organization of: MoKCa- Mutations of Kinases in Cancer
Cancer nlx_158259, grid.18886.3f, Wikidata: Q6039999, ISNI: 0000 0001 1271 4623 https://ror.org/043jzw605 SCR_003912 The Institute of Cancer Research 2026-09-12 12:56:05 12

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