Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Protein Modification Ontology Resource Report Resource Website |
Protein Modification Ontology (RRID:SCR_010412) | PSIMOD | controlled vocabulary, data or information resource, ontology | Ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified. | obo | is listed by: BioPortal | nlx_157560 | SCR_010412 | PSI-MOD | 2026-08-03 09:34:28 | 0 | ||||||||
|
QUDT Resource Report Resource Website 1+ mentions |
QUDT (RRID:SCR_010416) | QUDT | controlled vocabulary, data or information resource, ontology | Collection of ontologies that define the base classes properties, and restrictions used for modeling physical quantities, units of measure, and their dimensions in various measurement systems. The goal of the QUDT ontology is to provide a unified model of, measurable quantities, units for measuring different kinds of quantities, the numerical values of quantities in different units of measure and the data structures and data types used to store and manipulate these objects in software. This OWL schema is a foundation for a basic treatment of units. | owl | is listed by: BioPortal | nlx_157564 | SCR_010416 | Quantities Units Dimensions and Types Ontology, QUDT - Quantities Units Dimensions and Data Types Ontologies | 2026-08-03 09:34:49 | 1 | ||||||||
|
Ontology for MicroRNA Target Prediction Resource Report Resource Website |
Ontology for MicroRNA Target Prediction (RRID:SCR_010387) | OMIT | controlled vocabulary, data or information resource, ontology | Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans'' various diseases and biological processes (usually through miRs'' respective target genes). OMIT has reused and extended a set of well-established concepts from existing bio-ontologies, e.g., Gene Ontology, Sequence Ontology, Protein Ontology, NCBI Organism Taxonomy, Human Disease Ontology, Foundational Model of Anatomy, and so forth. | obo | is listed by: BioPortal | nlx_157519 | SCR_010387 | 2026-08-03 09:34:39 | 0 | |||||||||
|
Role Ontology Resource Report Resource Website |
Role Ontology (RRID:SCR_010420) | ROLEO | controlled vocabulary, data or information resource, ontology | Ontology in the domain of role classification that aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles. | owl | is listed by: BioPortal | nlx_157578 | SCR_010420 | 2026-08-03 09:34:41 | 0 | |||||||||
|
UBERON Resource Report Resource Website 50+ mentions |
UBERON (RRID:SCR_010668) | UBERON | controlled vocabulary, data or information resource, ontology | An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. Uberon consists of over 10000 classes (March 2014) representing structures that are shared across a variety of metazoans. The majority of these classes are chordate specific, and there is large bias towards model organisms and human. | anatomy, comparative, evolution, organ system, anatomical structure, body part, organ, tissue, body, vertebrate, function, phenotype, expression, model organism, obo |
is used by: Neuroscience Information Framework is listed by: BioPortal is related to: Gene Ontology has parent organization: OBO |
ARRA ; NSF ; NHGRI 5R01HG004838; NHGRI P41HG002273; DOE DE-AC02-05CH11231; NCRR 1U24RR029825-01; NHGRI P41HG002273-09S1 |
PMID:22293552 | nlx_74404 | SCR_010668 | Uber anatomy ontology, Uber-anatomy ontology | 2026-08-03 09:34:52 | 59 | ||||||
|
Cardiac Electrophysiology Ontology Resource Report Resource Website |
Cardiac Electrophysiology Ontology (RRID:SCR_007065) | EP | controlled vocabulary, data or information resource, ontology | Ontology that contains terms describing single-channel electrophysiological experiments and data obtained using voltage-clamp, current clamp and fluorescence imaging techniques applied at the cell level and multi-channel fluorescence imaging techniques applied at the cell, tissue and whole heart levels. | owl |
is listed by: BioPortal has parent organization: CardioVascular Research Grid (CVRG) |
nlx_157352 | SCR_007065 | 2026-08-03 09:33:21 | 0 | |||||||||
|
Cereal Plant Gross Anatomy Ontology Resource Report Resource Website |
Cereal Plant Gross Anatomy Ontology (RRID:SCR_007061) | GRO-CPGA | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary for the anatomy of Gramineae. Please note that this ontology has now been superseded by the Plant Ontology, http://bioportal.bioontology.org/ontologies/1587. | obo |
is listed by: BioPortal is related to: Plant Ontology has parent organization: Gramene |
nlx_157359 | http://www.gramene.org/plant_ontology/ | SCR_007061 | 2026-08-03 09:33:17 | 0 | ||||||||
|
C. elegans Phenotype Vocabulary Resource Report Resource Website |
C. elegans Phenotype Vocabulary (RRID:SCR_006924) | WB-PHENOTYPE | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary of Caenorhabditis elegans phenotypes. | obo |
is listed by: BioPortal has parent organization: WormBase |
nlx_157348 | SCR_006924 | 2026-08-03 09:33:12 | 0 | |||||||||
|
Cell Culture Ontology Resource Report Resource Website 1+ mentions |
Cell Culture Ontology (RRID:SCR_007096) | CCONT | controlled vocabulary, data or information resource, ontology | ontology for the formal representation of cell lines and their correspnding culture conditions. | owl | is listed by: BioPortal | nlx_157354 | SCR_007096 | 2026-08-03 09:33:22 | 1 | |||||||||
|
Cerrado concepts and plant community dynamics Resource Report Resource Website 1+ mentions |
Cerrado concepts and plant community dynamics (RRID:SCR_007174) | CCON | controlled vocabulary, data or information resource, ontology | Ontology of Cerrado wood plant dynamics to represent the set of concepts about the dynamics, that is, changes over time of the wood vegetation structure, of Cerrado. Ccon describes the main parameters used to measure the changes, such as mortality rate and recruitment rate. | owl | is listed by: BioPortal | nlx_157361 | SCR_007174 | 2026-08-03 09:33:21 | 2 | |||||||||
|
BIRNLex Resource Report Resource Website |
BIRNLex (RRID:SCR_007326) | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 26, 2011. Lexicon that provides entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. These sources may include complex image databases, such as data from structural and functional magnetic resonance imaging (MRI) on human subjects involved in studies on Alzheimer''s disease or schizophrenia. The BIRNLex is a specialized vocabulary utilized by BIRN scientists in the context of their research, including common terms for neuroanatomy, molecular species, subject information, behavioral and cognitive processes, experimental practice and design, and the associated elements of primary data provenance required for large-scale data integration across disparate experimental studies.The BIRNLex offers well defined terms from several domains of importance to neuroimaging across scales. | controlled vocabulary, owl |
is listed by: BioPortal has parent organization: Drexel University College of Medicine; Pennsylvania; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00199 | http://xwiki.nbirn.net:8080/xwiki/bin/view/%20BIRN-OTF-Public/ | SCR_007326 | BIRNLex | 2026-08-03 09:33:20 | 0 | |||||||
|
Computational Neuroscience Ontology Resource Report Resource Website |
Computational Neuroscience Ontology (RRID:SCR_007289) | CNO | controlled vocabulary, data or information resource, ontology | A controlled vocabulary of terms used in Computational Neurosciences to describe models of the nervous system. This first release of CNO is an alpha version and should be further aligned with other ontologies accessible on Bioportal and should be made compliant with the OBO foundry recommendations. | owl | is listed by: BioPortal | Creative Commons Attribution License, v3 Unported | nlx_157372 | SCR_007289 | 2026-08-03 09:33:27 | 0 | ||||||||
|
Solanaceae Phenotype Ontology Resource Report Resource Website |
Solanaceae Phenotype Ontology (RRID:SCR_007832) | SPTO | controlled vocabulary, data or information resource, ontology | Ontology for Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance. | obo | is listed by: BioPortal | nlx_157592 | SCR_007832 | 2026-08-03 09:33:43 | 0 | |||||||||
|
Computer-Based Patient Record Ontology Resource Report Resource Website |
Computer-Based Patient Record Ontology (RRID:SCR_007540) | CPRO | controlled vocabulary, data or information resource, ontology | A uniform core set of data elements (whose formal semantics are captured in OWL) for use in a Computer-Based Patient Record (CPR) | owl | is listed by: BioPortal | nlx_157375 | https://code.google.com/p/cpr-ontology/ | SCR_007540 | 2026-08-03 09:33:25 | 0 | ||||||||
|
Soy Ontology Resource Report Resource Website |
Soy Ontology (RRID:SCR_007847) | SOY | controlled vocabulary, data or information resource, ontology | Growth, trait and development ontology for soybean | obo |
is listed by: BioPortal has parent organization: SoyBase |
nlx_157593 | SCR_007847 | 2026-08-03 09:33:33 | 0 | |||||||||
|
Healthcare Common Procedure Coding System Resource Report Resource Website |
Healthcare Common Procedure Coding System (RRID:SCR_007598) | HCPCS | controlled vocabulary, data or information resource, ontology | Ontology for the healthcare common procedure coding system. | umls | is listed by: BioPortal | nlx_157426 | SCR_007598 | 2026-08-03 09:33:35 | 0 | |||||||||
|
Drug Interaction Knowledge Base Ontology Resource Report Resource Website |
Drug Interaction Knowledge Base Ontology (RRID:SCR_007591) | DIKB | controlled vocabulary, data or information resource, ontology | An evidence taxonomy for pharmacologic studies that, when combined with a set of inclusion criteria, enable drug experts to specify what their confidence in a drug mechanism assertion would be if it were supported by a specific set of evidence. | owl | is listed by: BioPortal | PMID:19435613 | nlx_157392 | SCR_007591 | 2026-08-03 09:33:34 | 0 | ||||||||
|
Congenital Heart Defects Ontology Resource Report Resource Website 50+ mentions |
Congenital Heart Defects Ontology (RRID:SCR_007584) | CHD | controlled vocabulary, data or information resource, ontology | An ontology that describes the Congenital Heart Defects data. | owl | is listed by: BioPortal | Congenital Heart Defect | nlx_157376 | SCR_007584 | 2026-08-03 09:33:26 | 61 | ||||||||
|
Surgical Secondary Events Resource Report Resource Website |
Surgical Secondary Events (RRID:SCR_007894) | SSE | controlled vocabulary, data or information resource, ontology | Memorial Sloan-Kettering Cancer Center''s ontology of surgical secondary events (adverse events). | owl | is listed by: BioPortal | SCR_007894 | 2026-08-03 09:33:34 | 0 | ||||||||||
|
Porifera Ontology Resource Report Resource Website 1+ mentions |
Porifera Ontology (RRID:SCR_000134) | PORO | controlled vocabulary, data or information resource, ontology | An ontology covering the anatomy of Porifera (sponges). | owl, anatomy |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is listed by: Ontobee is related to: Information Artifact Ontology |
Free, Available for download, Freely available | nlx_157558 | https://code.google.com/p/porifera-ontology/, http://purl.bioontology.org/ontology/PORO, http://purl.obolibrary.org/obo/poro.owl | http://purl.obolibrary.org/obo/poro | SCR_000134 | 2026-08-03 09:30:58 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
