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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Vitamin D to Prevent Type 2 Diabetes (D2d) Resource Report Resource Website 1+ mentions |
Vitamin D to Prevent Type 2 Diabetes (D2d) (RRID:SCR_014382) | D2d | resource, data set, data or information resource | A study to determine whether vitamin D supplementation is safe and effective in delaying the onset of type 2 diabetes in people at risk for the disease and to gain a better understanding of how vitamin D affects glucose metabolism. | diabetes, vitamin d, supplement, prevention, glucose metabolism |
is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) |
Type 2 diabetes | NIDDK | Study is ongoing | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014382 | Vitamin D to Prevent Type 2 Diabetes | 2026-08-06 09:28:20 | 1 | |||||
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Critical Path Initiative Resource Report Resource Website 1+ mentions |
Critical Path Initiative (RRID:SCR_012967) | CPI | portal, data or information resource | The FDA''s national strategy for transforming the way FDA-regulated products--human drugs, biological products, medical devices, veterinary drugs, foods, and cosmetics--are developed, evaluated, manufactured, and used. Specific key areas of focus identified by FDA experts and the public: * Developing better evaluation tools like biomarkers and new assays * Streamlining clinical trials by modernizing the clinical trial sciences to make trials safe and efficient * Harnessing bioinformatics (e.g., moving from a paper-based to electronic environment for exchanging information and overseeing the safety of FDA-regulated products) * Moving manufacturing into the 21st Century, using tools such as process analytic technology and nanotechnology * Developing products to address urgent public health needs, including, improved antimicrobial testing, new animal models to test bioterrorism countermeasures and vaccine testing * Focusing on at-risk populations, such as pediatrics | medical product, drug, biological product, medical device, veterinary drug, food, cosmetic, develop, evaluate, manufacture |
is related to: ACTTION is related to: JDRF Artificial Pancreas Project Consortium has parent organization: U.S. Food and Drug Administration |
U.S. Food and Drug Administration | nif-0000-30394 | http://www.fda.gov/oc/initiatives/criticalpath/whitepaper.pdf | SCR_012967 | Critical Path | 2026-08-06 09:28:04 | 1 | ||||||
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GENCODE Resource Report Resource Website 5000+ mentions Rating or validation data |
GENCODE (RRID:SCR_014966) | portal, dataset, project portal, data or information resource | Human and mouse genome annotation project which aims to identify all gene features in the human genome using computational analysis, manual annotation, and experimental validation. | human, mouse, genome, annotation, sequence, gene features, bio.tools |
is listed by: Debian is listed by: bio.tools is affiliated with: ENCODE |
NHGRI 5U54HG004555; Wellcome Trust WT098051 |
PMID:22955987 | Free | biotools:GENCODE | https://bio.tools/GENCODE | SCR_014966 | ENCODE | 2026-08-06 09:28:31 | 7700 | |||||
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NTU-DSI-122: a DSI template in ICBM-152 space Resource Report Resource Website 1+ mentions |
NTU-DSI-122: a DSI template in ICBM-152 space (RRID:SCR_014155) | image, map, radiographic image, data or information resource | A diffusion spectrum imaging (DSI) template constructed in the standard ICBM-152 space from 122 healthy adults. The template was built through incorporating the macroscopic anatomical information using high-resolution T1-weighted images and the microscopic structural information obtained from DSI datasets, rendering it to achieve a high anatomical matching to the ICBM-152 space. This template can serve as a representative DSI dataset for a healthy adult population. It is released in its original DWI format. | dsi, template, map, image, human brain | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | PMID:26095830 | Public, Available to the research community | SCR_014155 | 2026-08-06 09:28:16 | 1 | |||||||||
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Integrative Human Microbiome Project Resource Report Resource Website 1+ mentions |
Integrative Human Microbiome Project (RRID:SCR_015586) | iHMP | portal, project portal, data or information resource | Provides human microbiome datasets and minimum reporting standards established by DCC, from both initial HMP-1 phase and iHMP. Offers to query and retrieve metagenomic, metatranscriptomic, human genetic, microbial culture, and many other data types from each project. Provides integrated longitudinal datasets from both microbiome and host from different cohort studies of microbiome associated conditions. | human microbiota, human microbiome, microbiota repository, metagenomic data, metatranscriptomic data, human genetic data, microbial culture data |
is affiliated with: Stanford University; Stanford; California is affiliated with: Virginia Commonwealth University; Virginia; USA is affiliated with: Broad Institute is affiliated with: Jackson Laboratory is affiliated with: University of Maryland School of Medicine; Maryland; USA is related to: Human Microbiome Project |
PMID:25211071 | Free, Freely available | http://ihmpdcc.org/ | SCR_015586 | Integrative Human Microbiome Project (iHMP) | 2026-08-06 09:28:42 | 3 | ||||||
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UCSF Liver Center Resource Report Resource Website 1+ mentions |
UCSF Liver Center (RRID:SCR_015595) | portal, data or information resource, organization portal | Center whose goal is to integrate bench science with clinical investigation, in support of its vision to understand and cure human liver diseases. | UCSF, liver, liver disease |
is listed by: NIDDK Information Network (dkNET) is parent organization of: UCSF Liver Center Cell Biology Core is parent organization of: UCSF Liver Center Clinical & Translational Core is parent organization of: UCSF Liver Center Immunology Core is parent organization of: UCSF Liver Center Pathology & Imaging Core has organization facet: UCSF Liver Center Cell Biology Core has organization facet: UCSF Liver Center Clinical & Translational Core has organization facet: UCSF Liver Center Immunology Core has organization facet: UCSF Liver Center Pathology & Imaging Core is organization facet of: Digestive Disease Centers |
liver disease | NIDDK P30 DK026743 | Available to the research community | SCR_015595 | 2026-08-06 09:28:42 | 2 | ||||||||
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4D Nucleome Resource Report Resource Website 10+ mentions |
4D Nucleome (RRID:SCR_016925) | portal, project portal, data or information resource | Research project to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development and diseases. Portal provides free access to datasets, software packages, and protocols to advance biomedical research of nuclear architecture. Aims to develop and apply approaches to map the structure and dynamics of the human and mouse genomes. | nuclear, organization, gene, expression, cellular, function, normal, development, disease, map, structure, human, mouse, genome |
is listed by: NIDDK Information Network (dkNET) is related to: International Human Epigenome Consortium |
NIH Common Fund | PMID:28905911 | Public | SCR_016925 | 4D Nucleome Network; 4DN Web Portal, The 4D nucleome project, 4DN Portal | 2026-08-06 09:28:58 | 24 | |||||||
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DALAN Atlas Resource Report Resource Website |
DALAN Atlas (RRID:SCR_016262) | DALAN | data set, data or information resource, atlas | Atlas of human white matter diffusion streamlines for predicting medium/long range brain connectivity. The atlas uses the popular Harvard-Oxford (H-O) cortical and subcortical atlas as endpoint targets so that WM connectivity deficits can be analyzed in conjunction with corresponding GM deficits. | neuroimaging, white, matter, prediction, connectivity, neural, pathway, cortex, subcortex |
is related to: Bravissima has parent organization: U.S. Department of Veterans Affairs |
VA-CSR ; D 1 I01 CX000586-01A1 |
Freely available | SCR_016262 | DALAN: Disconnectivity Atlas for Lesion Analysis of Networks | 2026-08-06 09:28:50 | 0 | |||||||
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LiGeA Resource Report Resource Website 1+ mentions |
LiGeA (RRID:SCR_015940) | LiGeA | portal, database, data or information resource | Portal provides an easy access to a comprehensive database designed for storing, displaying and annotating gene fusion events detected from NGS data. It can query a database of somatic fusion genes events predicted and annotated starting from paired-end RNA-seq data. | database, portal, gene, fusion, cell, line, somatic, gene, detection, cancer, prediction, annotation, rna, rnaseq | Cancer | Free, Public, Available for download | SCR_015940 | LiGeA: a comprehensive database of human gene fusion events, cancer cell LInes GEne-fusions portAl, LiGeA Portal, LiGeA - a comprehensive database of human gene fusion events | 2026-08-06 09:28:46 | 1 | ||||||||
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PubMed Health Resource Report Resource Website 1+ mentions |
PubMed Health (RRID:SCR_000512) | PubMed Health | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on September 9, 2022. A consumer health database that provides up-to-date information on diseases, conditions, injuries, drugs, supplements, treatment options, and healthy living, with a special focus on comparative effectiveness research from institutions around the world. PubMed Health includes * consumer guides summarizing comparative effectiveness research * fact sheets on diseases and conditions * information on drugs and supplements * encyclopedic overviews of health topics * links to external Web sites PubMed Health has a special focus on comparative effectiveness research, in particular that research which evaluates the available evidence of the benefits and harms of different treatment options for different groups of people. In Comparative Effectiveness Research, experts often synthesize the evidence from dozens, or even hundreds, of individual studies. | health, disease, condition, injury, drug, supplement, treatment, healthy living, comparative effectiveness, research |
is used by: NIF Data Federation is related to: Integrated Disease has parent organization: NCBI |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_32805 | SCR_000512 | Pub Med Health | 2026-08-06 09:25:11 | 6 | |||||||
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CCLG Tissue Bank Resource Report Resource Website |
CCLG Tissue Bank (RRID:SCR_000524) | CCLG Tissue Bank | material resource, tissue bank, biomaterial supply resource | Tissue bank that provides access to tissue samples and an anonymized version of the tissue bank database.Bank has large collection of tumour, DNA and other tissue samples from childhood cancer patients. | cancer, tissue, tumor, database, sample, dna, biomaterial supply resource |
is listed by: One Mind Biospecimen Bank Listing has parent organization: CCLG has parent organization: University of Leicester; Leicester; United Kingdom |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_51003 | http://www.cclg.org.uk/index.php, http://www.cclg.org.uk/treatmentandresearch/content.php?2id=18 | SCR_000524 | Children's Cancer and Leukemia Group Tissue Bank, Children's Cancer and Leukaemia Group Tissue Bank | 2026-08-06 09:25:12 | 0 | ||||||
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UCSF Brain Tumor Tissue Bank Resource Report Resource Website |
UCSF Brain Tumor Tissue Bank (RRID:SCR_000647) | material resource, tissue bank, biomaterial supply resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 4th,2023. Brain Tumor Research Center Tissue Bank began collecting tissue in 1978 and has established an organized repository of characterized tissues--frozen, paraffin-embedded, blood and cultures--that are maintained in a manner useful for a wide range of studies. Samples are collected only from patients who have agreed to have their tissues banked and used for future research. Consent documents are maintained in a secure area and associated clinical data are held in a double-password protected computer database. Each sample received into the Tissue Bank is non-identifying number. No protected health information (PHI) is released. To obtain samples, investigators submit a request form to the Manager. The request form requires an explanation of the tissue requested (type, number of samples, justification), description of the study, CHR approval (see new policy regarding human vs. non-human research) and Project Leader authorization. The Manager reviews each request for feasibility before presentation to the Scientific Core Committee. The UCSF Neurosurgery Tissue Bank makes its inventory of stock cell lines available to all investigators. Requested cells are grown in T-25 flasks and shipped FedEx Priority Overnight at the receipient's expense. However, if you prefer, we can ship the frozen cells, packed in dry ice. (Note: some countries restrict dry ice shipments.) | tissue, frozen, paraffin-embedded, blood, culture, frozen tissuefrozen serum, serum, paraffin embedded tissue, research, cell, cell line |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of California at San Francisco; California; USA |
Tumor | NINDS P01 NS94297; NCI P-50-CA97257 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_33528, SCR_006439, nlx_143683 | https://gnome.ucsf.edu/tbank/ | SCR_000647 | UCSF Brain Tumor Research Center Tissue Bank, UCSF Brain Tumor Research Center Tissue Core, UCSF Neurosurgery Tissue Bank, UCSF Neurological Surgery Tissue Bank, UCSF BTRC Tissue Core | 2026-08-06 09:25:13 | 0 | |||||
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Alternative Splicing Annotation Project II Database Resource Report Resource Website 1+ mentions |
Alternative Splicing Annotation Project II Database (RRID:SCR_000322) | ASAP II | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on 8/12/13. An expanded version of the Alternative Splicing Annotation Project (ASAP) database with a new interface and integration of comparative features using UCSC BLASTZ multiple alignments. It supports 9 vertebrate species, 4 insects, and nematodes, and provides with extensive alternative splicing analysis and their splicing variants. As for human alternative splicing data, newly added EST libraries were classified and included into previous tissue and cancer classification, and lists of tissue and cancer (normal) specific alternatively spliced genes are re-calculated and updated. They have created a novel orthologous exon and intron databases and their splice variants based on multiple alignment among several species. These orthologous exon and intron database can give more comprehensive homologous gene information than protein similarity based method. Furthermore, splice junction and exon identity among species can be valuable resources to elucidate species-specific genes. ASAP II database can be easily integrated with pygr (unpublished, the Python Graph Database Framework for Bioinformatics) and its powerful features such as graph query, multi-genome alignment query and etc. ASAP II can be searched by several different criteria such as gene symbol, gene name and ID (UniGene, GenBank etc.). The web interface provides 7 different kinds of views: (I) user query, UniGene annotation, orthologous genes and genome browsers; (II) genome alignment; (III) exons and orthologous exons; (IV) introns and orthologous introns; (V) alternative splicing; (IV) isoform and protein sequences; (VII) tissue and cancer vs. normal specificity. ASAP II shows genome alignments of isoforms, exons, and introns in UCSC-like genome browser. All alternative splicing relationships with supporting evidence information, types of alternative splicing patterns, and inclusion rate for skipped exons are listed in separate tables. Users can also search human data for tissue- and cancer-specific splice forms at the bottom of the gene summary page. The p-values for tissue-specificity as log-odds (LOD) scores, and highlight the results for LOD >= 3 and at least 3 EST sequences are all also reported. | exon, gene structure, genome, alternative splicing, cancer genome alignment, intron, isoform, orthologous exon, orthologous gene, orthologous intron, protein sequence, splice site, tissue, genome alignment, cancer |
is related to: ASAP: the Alternative Splicing Annotation Project has parent organization: University of California at Los Angeles; California; USA |
NCRR U54 RR021813; NIDCR DE-FC02-02ER63421 |
PMID:17108355 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02572 | SCR_000322 | ASAP II Database, Alternative Splicing Annotation Project II | 2026-08-06 09:25:09 | 2 | |||||
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Southampton Tumour Bank Resource Report Resource Website |
Southampton Tumour Bank (RRID:SCR_000673) | Southampton Tumour Bank | material resource, tissue bank, biomaterial supply resource | Collects and distributes human tissue for ethically approved studies to aid the study of cancer biology and other associated research. All tissue is collected with patient consent and tissue is distributed only to ethically approved studies. The purpose of the Tissue Bank is to source, organize, collect, prepare, store and distribute a diverse collection of human tissues and biological products. This valuable core resource is available to all local academics and researchers. The on-site bank allows for rapid access to a plethora of biological materials supported by an informatics system of databases acting as an inventory management system. In addition, the Tissue Bank provides a licensed facility to store surplus tissue when studies close. Tissues currently available include normal and malignant snap frozen blocks, freshly prepared spleen and lymph nodes, fresh biopsy tissues, blood products and biological fluids. Collections can be organized by bank staff or ran in parallel with current research activities and include a wide variety of cancer classifications. We currently hold over 38,000 vials. Tissue Availability: Lymphoma - solid tissue and cells - 843; Breast - solid tissue and cells - 540; Colon - solid tissue and cells - 238; Lung - solid tissue and cells - 43; Upper Gi - BIOPSY tissue - 114; Pleural fluid and cells - 14 | cancer biology, cancer, tumor, blood product, biological fluid, tissue, spleen, lymph node, biopsy tissue, blood product, bodily fluid, blood, lymphoma, solid tissue, cell, breast, colon, lung, upper gastrointestinal, pleural fluid, gastrointestinal |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Southampton; Southampton; United Kingdom |
Cancer, Tumor, Normal, Malignant | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_14010 | http://www.som.soton.ac.uk/research/facilities/cruk/infrastructure/tumour_bank/default.htm | SCR_000673 | University of Southampton Tumour Bank, University of Southampton Tumor Bank, University of Southampton Cancer Research UK Centre Tumour Bank, Southampton Tumor Bank, Cancer Research UK Centre Tumour Bank, Cancer Research UK Center Tumor Bank | 2026-08-06 09:25:15 | 0 | |||||
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Emory ADRC Tissue and Biospecimen Banking Facility Resource Report Resource Website |
Emory ADRC Tissue and Biospecimen Banking Facility (RRID:SCR_000551) | material resource, tissue bank, biomaterial supply resource | The Alzheimer's Disease Research Center at Emery University maintains an active brain bank to facilitate the acquisition, storage, handling and distribution of well-characterized autopsy brain tissue and other materials to investigators. It contains frozen tissue and brain specimens, formalin fixed tissue, paraformaldehyde fixed tissue, and cryopreserved tissue. The ADRC also has access to tissues and samples related to other neurodegenerative diseases. It contains plasma samples, serum samples, lymphoblast cell lines, and cerebrospinal fluid. | brain bank, biomaterial supply resource, brain tissue, plasma, cerebral spinal fluid, serum, lymphoblast cell line, buffy coat isolate, buffy coat, frozen, paraffin block, paraformaldehyde-fixed, cryopreserved, alzheimer's disease, parkinson's disease, neurodegenerative disease, tauopathy, huntington's disease, normal control |
is listed by: One Mind Biospecimen Bank Listing is affiliated with: Emory Alzheimer's Disease Research Center is related to: Emory Neurology Database has parent organization: Emory University School of Medicine; Atlanta; Georgia; USA |
Alzheimer's disease, Parkinson's disease, Neurodegenerative disease, Tauopathy, Huntington's disease, Creutzfeldt-Jakob Syndrome, Dementia, Movement disorder, Sleep disorder, Stroke, Neuromuscular disease, Nervous system disease, Amyotrophic Lateral Sclerosis, Restless Leg Syndrome | NINDS P30 NS055077 | Public, Investigators must notify the ADRC of data use, Investigators must send a final copy of any accepted manuscript that used data or recruited research participations from the ADRC, Grant acknowledgement required, Institution acknowledgement required | nlx_144036 | SCR_000551 | Emory Tissue and Biospecimen Banking Facilities, Emory Tissue & Biospecimen Banking Facility, Emory ADRC Tissue & Biospecimen Banking Facility | 2026-08-06 09:25:12 | 0 | ||||||
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AxoGen Resource Report Resource Website |
AxoGen (RRID:SCR_000326) | material resource, tissue bank, biomaterial supply resource | A medical technology company whose research and products revolve around peripheral nerve repair. | commercial, peripheral nerve repair, nerve repair, nerve repair technology, nerve injury, nerve, regenerative medicine, porcine submucosa extracellular matrix | Commercial | nlx_47454 | SCR_000326 | 2026-08-06 09:25:09 | 0 | ||||||||||
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Smart Dictionary Lookup Resource Report Resource Website |
Smart Dictionary Lookup (RRID:SCR_000568) | Smart Dictionary Lookup | service resource, database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 9, 2022. System that retrieves relevant UniProt IDs from BioThesaurus entries using a soft string matching algorithm. | gene, protein |
uses: UniProt uses: BioThesaurus is listed by: OMICtools has parent organization: University of Manchester; Manchester; United Kingdom |
PMID:17698493 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01198 | SCR_000568 | 2026-08-06 09:25:12 | 0 | |||||||
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CryoCord Stem Cell Bank Resource Report Resource Website 1+ mentions |
CryoCord Stem Cell Bank (RRID:SCR_000329) | material resource, tissue bank, biomaterial supply resource | A stem cell bank in Malaysia which provides and carries out long-term human stem cells and tissue cryopreservation and research. The general public can use their biobanking services for personal use. | stem cell, cryopreservation, tissue bank, indonesia, asia, stem cell bank, human stem cell | Commercial, Available to the general public | nlx_57364 | SCR_000329 | CryoCord Premier Stem Cell Bank, CryoCord Sdn Bhd | 2026-08-06 09:25:09 | 1 | |||||||||
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Disease Genes Conserved Sequence Tags Database Resource Report Resource Website |
Disease Genes Conserved Sequence Tags Database (RRID:SCR_000760) | database, data or information resource | A database of conserved sequence elements, identified by a systematic genomic sequence comparison between a set of human genes involved in the pathogenesis of genetic disorders and their murine counterparts. Human and mouse genomic sequences were compared by BLASTZ. Sequences longer than 100 and with identity better than 70 were selected as CSTs and imported into the database. CSTs are extensively annotated with respect to exon/intron structure and other biological parameters. CST counterparts in other species were identified by using BLAST to scan genomes from other species, and selecting on the basis of homology and co-linearity. The database can be accessed by gene, chromosomal location, graphic browser, DNA features, and coding regions. | database, conserved sequence element, genomic sequence, human gene, pathogenesis, genetic disorder, blastz, cst | Telethon Foundation ; the Associazione Italiana per la Ricerca sul Cancro (AIRC) ; the Federazione Italiana per la Ricerca sul Cancro (FIRC) ; the Italian Ministry for Research (MURST) ; the National Council for Research (CNR) ; Regione Campania ; BioGeM |
PMID:15608249 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21121 | SCR_000760 | DG CST Database | 2026-08-06 09:25:16 | 0 | |||||||
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Healthy People Resource Report Resource Website 10+ mentions |
Healthy People (RRID:SCR_001446) | Healthy People | database, data or information resource | Database portal for science-based, 10-year national objectives resulting from a multiyear process that reflects input from a diverse group of individuals and organizations for improving the health of all Americans. 2020 Topics & Objectives are available in an A-Z format. DATA2020, the Healthy People 2020 interactive data tool, allows users to explore the data and technical information related to the Healthy People 2020 objectives. For 3 decades, Healthy People has established benchmarks and monitored progress over time in order to: * Encourage collaborations across communities and sectors. * Empower individuals toward making informed health decisions. * Measure the impact of prevention activities. Healthy People 2020 strives to: * Identify nationwide health improvement priorities. * Increase public awareness and understanding of the determinants of health, disease, and disability and the opportunities for progress. * Provide measurable objectives and goals that are applicable at the national, State, and local levels. * Engage multiple sectors to take actions to strengthen policies and improve practices that are driven by the best available evidence and knowledge. * Identify critical research, evaluation, and data collection needs. | health, prevention, improvement, disease, disability, public awareness, injury, quality of life, healthy development, healthy behavior, healthy, public health, data set |
is listed by: NIDDK Information Network (dkNET) has parent organization: U.S. Department of Health and Human Services |
Free, Freely Available | nlx_152705 | SCR_001446 | HealthyPeople.gov, Healthy People 2020 | 2026-08-06 09:25:23 | 32 |
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