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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Renal Disease Portal Resource Report Resource Website |
Renal Disease Portal (RRID:SCR_009030) | Renal Disease Portal | data or information resource, data set, topical portal, portal, disease-related portal | An integrated resource for information on genes, QTLs and strains associated with a variety of kidney and renal system conditions such as Renal Hypertension, Polycystic Kidney Disease and Renal Insufficiency, as well as Kidney Neoplasms. | gene, quantitative trait locus, strain, renal hypertension, kidney neoplasm, phenotype, pathway, biological process, disease, kidney, genome, gviewer, chromosome, molecular function, cellular component, visualization, synteny |
is related to: NIDDK Information Network (dkNET) is related to: Gene Ontology has parent organization: Rat Genome Database (RGD) |
Renal disease, Renal hypertension, Polycystic kidney disease, Renal insufficiency, Kidney neoplasm, Diabetes Insipidus, Hyperoxaluria, Renal hypertension, Nephritis, Nephrocalcinosis, Nephrolithiasis, Nephrosis, Renal Fibrosis, Inborn Error of Renal Tubular Transport, Uremia | nlx_153941 | SCR_009030 | RGD Renal Disease Portal | 2026-08-08 11:59:23 | 0 | |||||||
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National Geophysical Data Center Resource Report Resource Website 10+ mentions |
National Geophysical Data Center (RRID:SCR_009429) | NGDC | data or information resource, portal, organization portal, service resource | National Data Center that provides scientific stewardship, products, and services for geophysical data from sea floor and solid earth environments, including Earth observations from space. Please note that routine underway geophyiscal shipboard data collected with standard equipment aboard the UNOLS fleet (e.g. bathymetry, subbottom, magnetics, gravity) are routinely transmitted to NGDC via Rolling Deck to Repository (R2R). | geophysics, sea floor, solid earth, bathymetry, subbottom, magnetics, gravity |
is listed by: CINERGI has parent organization: National Oceanic and Atmospheric Administration |
nlx_154716 | SCR_009429 | 2026-08-08 11:59:20 | 46 | |||||||||
|
National Climatic Data Center Resource Report Resource Website 100+ mentions |
National Climatic Data Center (RRID:SCR_009427) | NCDC | data or information resource, database, service resource, storage service resource, data repository | National Data Center that accepts and makes available weather, climate, paleoclimate, meteorological data. | weather, climate, paleoclimate, meteorology, FASEB list |
is listed by: CINERGI has parent organization: National Oceanic and Atmospheric Administration is parent organization of: World Data Center for Paleoclimatology |
nlx_154702 | SCR_009427 | 2026-08-08 11:59:23 | 135 | |||||||||
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GRDR Resource Report Resource Website 1+ mentions |
GRDR (RRID:SCR_008978) | GRDR, RaDaR | data or information resource, people resource, patient registry, database, service resource, storage service resource, data repository | Data repository of de-identified patient data, aggregated in a standardized manner, to enable analyses across many rare diseases and to facilitate various research projects, clinical studies, and clinical trials. The aim is to facilitate drug and therapeutics development, and to improve the quality of life for the many millions of people who are suffering from rare diseases. The goal of GRDR is to enable analyses of data across many rare diseases and to facilitate clinical trials and other studies. During the two-year pilot program, a web-based template will be developed to allow any patient organization to establish a rare disease patient registry. At the conclusion of the program, guidance will be available to patient groups to establish a registry and to contribute de-identified patient data to the GRDR repository. A Request for Information (RFI) was released on February 10, 2012 requesting information from patient groups about their interest in participating in a GRDR pilot project. ORDR selected 30 patient organizations to participate in this pilot program to test the different functionalities of the GRDR. Fifteen (15) organizations with established registries and 15 organizations that do not have patient registry. The 15 patient groups, each without a registry, were selected to assist in testing the implementation of the ORDR Common Data Elements (CDEs) in the newly developed registry infrastructure. These organizations will participate in the development and promotion of a new patient registry for their rare disease. The GRDR program will fund the development and hosting of the registry during the pilot program. Thereafter, the patient registry is expected to be self-sustaining.The 15 established patient registries were selected to integrate their de-identified data into the GRDR to evaluate the data mapping and data import/export processes. The GRDR team will assist these organizations in mapping their existing registry data to the CDEs. Participating registries must have a means to export their de-identified registry data into a specified data format that will facilitate loading the data into the GRDR repository on a regular basis. The GRDR will also develop the capability to link patients'''' data and medical information to donated biospecimens by using a Voluntary Global Unique Patient Identifier (GUID). The identifier will enable the creation of an interface between the patient registries that are linked to biorepositories and the Rare Disease Human Biospecimens/Biorepositories (RD-HUB) http://biospecimens.ordr.info.nih.gov/. | clinical, common data element, global unique patient identifier, clinical trial, drug development, therapy |
is related to: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) is related to: NIH Data Sharing Repositories has parent organization: Office of Rare Diseases Research |
Rare disease | NIH | Public, The community can contribute to this resource | nlx_152145 | http://www.grdr.info/ | SCR_008978 | Rare Diseases Registry Program (RaDaR), Global Rare Diseases Patient Registry and Data Repository | 2026-08-08 11:59:18 | 1 | ||||
|
Mind Lab Resource Report Resource Website |
Mind Lab (RRID:SCR_009025) | Mind Lab | video resource, data or information resource, image collection | Interactive laboratory of the mind composed of 4 themed sessions housing four short introductory movies and sixteen trials with those you can experience visual phenomena and illusions used for study in psychological experiments. | visual illusion, sensory perception, visual phenomena, psychological experiment, vision | has parent organization: Japan Science and Technology Agency | nlx_153853 | http://jvsc.jst.go.jp/find/mindlab/english/ | SCR_009025 | JST Virtual Science Center Mind Lab | 2026-08-08 11:59:11 | 0 | |||||||
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MFCompress Resource Report Resource Website 1+ mentions |
MFCompress (RRID:SCR_009301) | MFCompress | software resource | A compression tool for FASTA and multi-FASTA files. | is listed by: OMICtools | PMID:24132931 | OMICS_00963 | SCR_009301 | 2026-08-08 11:59:12 | 3 | |||||||||
|
RLZ Resource Report Resource Website |
RLZ (RRID:SCR_009420) | RLZ | software resource | Optimized relative Lempel-Ziv compression of genomes. | is listed by: OMICtools | OMICS_00966 | SCR_009420 | Relative Lempel-Ziv Compression of Genomes | 2026-08-08 11:59:19 | 0 | |||||||||
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GReEn Resource Report Resource Website 100+ mentions |
GReEn (RRID:SCR_009264) | GReEn | software resource | A compression tool recently proposed for compressing genome resequencing data using a reference genome sequence., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. |
is listed by: OMICtools has parent organization: University of Aveiro; Aveiro; Portugal |
PMID:23872967 PMID:22139935 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00959 | SCR_009264 | Genome Resequencing Encoding | 2026-08-08 11:59:19 | 346 | |||||||
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Digital Ageing Atlas Resource Report Resource Website 10+ mentions |
Digital Ageing Atlas (RRID:SCR_009020) | DAA | data or information resource, database, service resource, storage service resource, data repository | Database of age-related changes covering different biological levels, including molecular, physiological, psychological and pathological age-related data, to create an interactive portal that serves as a centralized collection of human aging changes and pathologies. To facilitate integrative, system-level studies of aging, the DAA provides a centralized source for aging-related data as well as basic tools to query and visualize the data, including anatomical models. Data in the DAA is manually curated from the literature and retrieved from public databases. For more detailed analyses users are able to download the entire database. More information on how to use the DAA is available on the help page. The DAA primarily focuses on human aging, but also includes supplementary mouse data, in particular gene expression data, to enhance and expand the information on human aging. If you would like to contribute to the database yourself, for instance if you have new data on aging, please use the contribute page to submit your data. | late adult human, anatomy, gene, molecular, pathological, physiological, psychological, tissue, reference, cellualar, gene expression | has parent organization: University of Liverpool; Liverpool; United Kingdom | Aging | The community can contribute to this resource, Creative Commons Attribution License, v3 Unported | nlx_153874 | SCR_009020 | Digital Aging Atlas | 2026-08-08 11:59:23 | 15 | ||||||
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SeqBuster Resource Report Resource Website 10+ mentions |
SeqBuster (RRID:SCR_009616) | software resource, software application, data analysis software, data processing software | Software tool for processing and analysis of small RNAs datasets.Reveals ubiquitous miRNA modifications in human embryonic cells. | small RNAs datasets, ubiquitous miRNA modifications, human embryonic cells, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Spanish Ministry of Health ; CIBERESP ; Sixth Framework Programme of the European Commission ; Spanish Ministry of Science and Innovation |
PMID:20008100 | Free, Available for download, Freely available | OMICS_00367, biotools:seqbuster | https://bio.tools/seqbuster | SCR_009616 | 2026-08-08 11:59:23 | 31 | ||||||
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Fiber Optic Button Response System Resource Report Resource Website 10+ mentions |
Fiber Optic Button Response System (RRID:SCR_009577) | instrument resource | Instrument that accurately gathers participant responses and verifies signals. The Celeritas Series response units are assembled using high-impact, chemical resistant, medical grade plastic. The response units include a tactile indicator to ensure correct finger placement during experiments and comfortably attach to the participant?s wrists. The units communicate button presses through fiber optic cabling which connects to a Fiber Optic Interface Console located in the control room through an available wave guide. The interface console provides real-time feedback of participant responses via LED indicators and includes a set of switches which can be used to make responses for the participant as needed. | eeg, meg, electrocorticography, experiment control, hardware, magnetic resonance, response monitoring, instrument, equipment | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | https://drive.google.com/file/d/1vvm02GkPgAG6LnRzWE9FEQZD6JSqtngA/view?usp=drivesdk | nlx_155759 | http://www.nitrc.org/projects/fobrs, https://pstnet.com/wp-content/uploads/2021/04/Celeritas-Operator-Manual.pdf | SCR_009577 | Celeritas Fiber Optic Response System | 2026-08-08 11:59:25 | 22 | |||||||
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Oregon State University; Oregon; USA Resource Report Resource Website 1+ mentions |
Oregon State University; Oregon; USA (RRID:SCR_009731) | university | Public research university in Corvallis, Oregon. The university currently offers more than 200 undergraduate-degree programs along with a variety of graduate and doctoral degrees. |
is parent organization of: TileQC is parent organization of: AFTOL is parent organization of: CASHX is parent organization of: Chromaseq is parent organization of: Plant Ontology is parent organization of: Plant Ontology is parent organization of: Northern Spalting - Applied Mycology Lab is parent organization of: EnVision Manager is parent organization of: Oregon State University Center for Quantitative Life Sciences Core Facility is parent organization of: Oregon State University Electron Microscopy Core Facility has organization facet: pathogensurveillance |
Wikidata:Q861888, ISNI:0000 0001 2112 1969, Crossref funder ID:100009612, nlx_87751, grid.4391.f | https://ror.org/00ysfqy60 | SCR_009731 | 2026-08-08 11:59:16 | 2 | ||||||||||
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FIV Resource Report Resource Website |
FIV (RRID:SCR_009575) | FIV | software resource, software application, data visualization software, data processing software | A tool for visualizing functional and anatomic MRI data. | analyze, dicom, image display, java, linux, macos, microsoft, minc, magnetic resonance, nifti, posix/unix-like, sunos/solaris, visualization, web environment, win32 (ms windows), mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
BSD License | nlx_155756 | http://www.nitrc.org/projects/fiv | SCR_009575 | Functional Image Viewer | 2026-08-08 11:59:22 | 0 | ||||||
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NCIGT Fast Imaging Library Resource Report Resource Website |
NCIGT Fast Imaging Library (RRID:SCR_009609) | Fast Imaging Library | image reconstruction software, software toolkit, image analysis software, software resource, software application, data processing software | This software provides algorithms for the reconstruction of raw MR data. In particular, it supports the reconstruction of accelerated data acquisitions where k-space is subsampled and the Fourier domain encoding is complemented by temporal encoding, spatial encoding, or and/or a constrained reconstruction. This library of functions provides a number of reconstruction algorithms that accurately employ advanced MR imaging methods including: UNFOLD; parallel imaging methods such as SENSE and GRAPPA; Homodyne processing of partial-Fourier data, and gradient field inhomogeneity correction (gradwarp); EPI Nyquist Ghost correction and ramp-sampling gridding. The target audience is research groups who may be interested in exploring or employing advanced MR reconstruction techniques, but don't have the necessary expertise in-house. Inquires may be directed to: ncigt-imaging-toolkit -at- bwh.harvard.edu | algorithm, reusable library, application, c, console (text based), image reconstruction, linux, macos, microsoft, magnetic resonance, posix/unix-like, windows | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | NC-ICT Fast Imaging Library Contribution and Software License, Http://www.nitrc.org/include/glossary.php#569 | nlx_155822 | http://www.nitrc.org/projects/igt_fil | SCR_009609 | NC-IGT Fast Imaging Library, National Center for Image-Guided Therapy Fast Imaging Library | 2026-08-08 11:59:26 | 0 | ||||||
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MazeSuite Resource Report Resource Website 10+ mentions |
MazeSuite (RRID:SCR_009606) | MazeSuite | software toolkit, software resource, software application, data visualization software, data processing software | A complete set of tools that enables researchers to perform spatial and navigational behavior experiments within interactive, easy to create, and extendable (e.g., multiple rooms) 3D virtual environments. MazeSuite can be used to design/edit adapted 3D environments where subjects? behavioral performance can be tracked. Maze Suite consists of three main applications; an editing program to create and alter maps (MazeMaker), a visualization/rendering module (MazeWalker), and finally an analysis/mapping tool (MazeAnalyzer). Additionally, MazeSuite has the capabilities of sending signal pulses to physiological recording devices using standard computer ports. MazeSuite, with all 3 applications, is a unique and complete toolset for researchers who want to easily and rapidly deploy interactive 3D environments. Requirements Maze Suite is designed for Windows 7, Windows Vista and Windows XP. 3D rendering quality depends on available graphics card hardware; OpenGL 2.1 or above compliant is recommended. For Windows XP systems, .NET Framework Version 2.0 or above is required and can be downloaded from Microsoft's website. | eeg, meg, electrocorticography, optical imaging, behavior |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Drexel University; Pennsylvania; USA |
PMID:18411560 | Account required, Non-commercial, Software License Agreement, Http://mazesuite.com/forum/ucp.php?mode=terms&sid=7373a682447f060f67ec8693b7e470f7 | nlx_155807 | http://www.nitrc.org/projects/mazesuite | SCR_009606 | Maze Suite | 2026-08-08 11:59:22 | 12 | |||||
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Mango Resource Report Resource Website 100+ mentions |
Mango (RRID:SCR_009603) | Mango | image processing software, image analysis software, software resource, software application, data visualization software, data processing software | A viewer for medical research images that provides analysis tools and a user interface to navigate image volumes. There are three versions of Mango, each geared for a different platform: * Mango ? Desktop ? Mac OS X, Windows, and Linux * webMango ? Browser ? Safari, Firefox, Chrome, and Internet Explorer * iMango ? Mobile ? Apple iPad Key Features: * Built-in support for DICOM, NIFTI, Analyze, and NEMA-DES formats * Customizable: Create plugins, custom filters, color tables, file formats, and atlases * ROI Editing: Threshold and component-based tools for painting and tracing ROIs * Surface Rendering: Interactive surface models supporting cut planes and overlays * Image Registration: Semi-automatic image coregistration and manual transform editing * Image Stacking: Threshold and transparency-based image overlay stacking * Analysis: Histogram, cross-section, time-series analysis, image and ROI statistics * Processing: Kernel and rank filtering, arithmetic/logic image and ROI calculators | analyze, atlas application, console (text based), dicom, gifti, java, linux, macos, microsoft, magnetic resonance, nifti, os independent, platform, posix/unix-like, quantification, region of interest, registration, rendering, segmentation, spatial transformation, statistical operation, sunos/solaris, surface analysis, temporal transformation, visualization, volumetric analysis, web environment, win32 (ms windows), windows, windows vista, windows xp |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA |
NIBIB P01-EB01955; NIBIB R01-EB015314-01a1; NIMH R01-MH074457 |
Free | nlx_155804 | http://www.nitrc.org/projects/mango | SCR_009603 | Multi-image Analysis GUI | 2026-08-08 11:59:14 | 491 | |||||
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EEGVIS Resource Report Resource Website 1+ mentions |
EEGVIS (RRID:SCR_009569) | EEGVIS | software toolkit, software resource, software application, data visualization software, data processing software | A MATLAB toolbox for exploration of multi-channel EEG and other large array-based data sets using multi-scale drill-down techniques. The toolbox can be used directly in MATLAB at any stage in a user's processing pipeline, as a plug in for EEGLAB, or as a standalone precompiled application without MATLAB running. EEGVIS and its supporting packages are freely available under the GNU general public license. The toolbox also supplies a number of extensible base classes for users who wish to develop their own visualizations. | reusable library, eeg, meg, electrocorticography, matlab, statistical operation, visualization |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: University of Texas at San Antonio; Texas; USA |
PMID:22654753 | GNU General Public License | nlx_155749 | http://www.nitrc.org/projects/eegvis | SCR_009569 | 2026-08-08 11:59:14 | 1 | ||||||
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ISRNA Resource Report Resource Website 1+ mentions |
ISRNA (RRID:SCR_009565) | ISRNA | software resource | An online toolkit for analyzing high-throughput small RNA sequencing data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | is listed by: OMICtools | PMID:24300438 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00360 | SCR_009565 | Integrative Short Reads NAvigator | 2026-08-08 11:59:25 | 3 | |||||||
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DTI-Reg Resource Report Resource Website |
DTI-Reg (RRID:SCR_009560) | DTI-Reg | registration software, image analysis software, software resource, software application, data processing software | An open-source C++ application that performs pair-wise DTI registration, using scalar FA map to drive the registration. Individual steps of the pair-wise registration pipeline are performed via external applications - some of them being 3D Slicer modules. Starting with two input DTI images, scalar FA maps are generated via dtiprocess. Registration is then performed between these FA maps, via BRAINSFit/BRAINSDemonWarp or ANTS -Advanced Normalization Tools-, which provide different registration schemes: rigid, affine, BSpline, diffeomorphic, logDemons. The final deformation is then applied to the source DTI image via ResampleDTI. | analyze, c++, magnetic resonance, nrrd, os independent, registration, resampling, spatial transformation, workflow | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | BSD License | nlx_155740 | http://www.nitrc.org/projects/dtireg | SCR_009560 | 2026-08-08 11:59:25 | 0 | |||||||
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shortran Resource Report Resource Website |
shortran (RRID:SCR_009636) | shortran | software resource | A pipeline for small RNA-seq data analysis. | is listed by: OMICtools | PMID:22914220 | Free | OMICS_00368 | SCR_009636 | 2026-08-08 11:59:23 | 0 |
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