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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Sanford Burnham Prebys Medical Discovery Institute
 
Resource Report
Resource Website
1+ mentions
Sanford Burnham Prebys Medical Discovery Institute (RRID:SCR_011516) SBP, SBP Medical Discovery Institute institution Conducts world class collaborative research dedicated to finding cures for human disease, improving quality of life, and thus creating a legacy for its employees, partners, donors, and community. SBP is dedicated to discovering the fundamental molecular causes of disease and devising the innovative therapies of tomorrow. Has established major research programs in cancer, neurodegeneration, diabetes, and infectious, inflammatory, and childhood diseases. SBP is a U.S.-based, non-profit public benefit corporation, with operations in San Diego (La Jolla) and Orlando (Lake Nona) in Florida. Discovering disease, disease molecular causes, innovative therapies is parent organization of: PMAP
is parent organization of: Sanford-Burnham Medical Research Institute Labs and Facilities
is parent organization of: Sanford-Burnham Neuroscience and Aging Research Center
is parent organization of: TOPSAN
is parent organization of: Sanford-Burnham Stem Cell Core Facility
is parent organization of: Sanford-Burnham Applied Bioinformatics Core Facility
is parent organization of: Sanford-Burnham Protein Production and Analysis Core
is parent organization of: Sanford-Burnham Histology Core Facility at Lake Nona
is parent organization of: La Jolla Interdisciplinary Neurosciences Center
is parent organization of: RESP ESP charged Database
is parent organization of: Joint Center for Structural Genomics
is parent organization of: Sanford Burnham Prebys Medical Discovery Institute Cancer Metabolism Core Facility
is parent organization of: Sanford Burnham Prebys Medical Discovery Institute Proteomics Core Facility
is parent organization of: Sanford Burnham Prebys Medical Discovery Institute Flow Cytometry Core Facility
NCI Wikidata: Q7417591, grid.479509.6, ISNI: 0000 0001 0163 8573, nlx_144485, SCR_014876 https://ror.org/03m1g2s55 http://www.sanfordburnham.org/Pages/Splash.aspx SCR_011516 SBP Medical Discovery Institute, Sanford Burnham Prebys 2026-08-01 12:04:10 1
Microfluidic device to attain high spatial and temporal control of oxygen
 
Resource Report
Resource Website
Microfluidic device to attain high spatial and temporal control of oxygen (RRID:SCR_017131) instrument resource Device to control spatial and temporal variations in oxygen tensions to better replicate in vivo biology. Consists of three parallel connected tissue chambers and oxygen scavenger channel placed adjacent to these tissue chambers. Provides consistent control of spatial and temporal oxygen gradients in tissue microenvironment and can be used to investigate important oxygen dependent biological processes present in cancer, ischemic heart disease, and wound healing. device, instrument, control, spatial, temporal, variation, oxygen, tension, tissue, microenvironment NCATS UH3 TR00048;
NCI R01 CA170879;
NIDDK UC4 DK104202;
NSF DGE-1143954
PMID:30571786 SCR_017131 2026-08-01 12:05:53 0
Moffitt Cancer Center
 
Resource Report
Resource Website
1+ mentions
Moffitt Cancer Center (RRID:SCR_008730) Moffitt institutional portal H. Lee Moffitt Cancer Center & Research Institute has made a lasting commitment to the prevention and cure of cancer, working tirelessly in the areas of patient care, research and education to advance one step further in fighting this disease. As part of an elite group of National Cancer Institute (NCI) Comprehensive Cancer Centers, Moffitt focuses on the development of early stage translational research aimed at the rapid translation of scientific discoveries to benefit patient care. Since the first patient admission in October 1986, Moffitt physicians, scientists and staff members have worked together to establish a tradition of excellence offered in an atmosphere characterized by kindness, caring and hope. The Cancer Center''s future growth in clinical care and research rests firmly on this tradition and makes possible the changes ahead. The mission of Moffitt Cancer Center is to contribute to the prevention and cure of cancer. Moffitt''s vision is to be the leader in scientific discovery and translation into compassionate care, cures, and prevention of cancer for our community and the world. As it grows to fulfill its mission, the Cancer Center will continue to be distinguished by its compassionate and effective patient care. Moffitt Cancer Center is a not-for-profit institution. It includes private patient rooms, the Southeast''s largest Blood and Marrow Transplant Program, outpatient treatment programs that record more than 320,500 visits a year, the Moffitt Research Center, Moffitt Cancer Center at International Plaza and the Lifetime Cancer Screening & Prevention Center. cancer, human has parent organization: University of South Florida; Florida; USA
is parent organization of: Moffitt Cancer Center Tissue Core
is parent organization of: Moffitt Cancer Center Proteomics and Metabolomics Core Facility
is parent organization of: Moffitt Cancer Center Tissue Core Facility
is parent organization of: Moffitt Cancer Center Small Animal Imaging Laboratory Core Facility
is parent organization of: Moffitt Cancer Center Molecular Genomics Core Facility
is parent organization of: Moffitt Cancer Center Molecular Genomics Core Facility
NCI nlx_143722 SCR_008730 H. Lee Moffitt Cancer Center and Research Institute, H. Lee Moffitt Cancer Center & Research Institute 2026-08-01 12:03:51 3
Dana-Farber Cancer Institute
 
Resource Report
Resource Website
1+ mentions
Dana-Farber Cancer Institute (RRID:SCR_003040) DFCI institution Cancer institute that provides expert, compassionate care to children and adults with cancer while advancing the understanding, diagnosis, treatment, cure, and prevention of cancer and related diseases. As an affiliate of Harvard Medical School and a Comprehensive Cancer Center designated by the National Cancer Institute, the Institute also provides training for new generations of physicians and scientists, designs programs that promote public health particularly among high-risk and underserved populations, and disseminates innovative patient therapies and scientific discoveries to their target community across the United States and throughout the world.
child, adult human, pediatric, young human has parent organization: Harvard Medical School; Massachusetts; USA
is parent organization of: Spotfinder
is parent organization of: TM4 Microarray Software Suite - TIGR MultiExperiment Viewer
is parent organization of: Gene Index Project
is parent organization of: CistromeMap
is parent organization of: BINOCh
is parent organization of: Dana Farber Tissue Bank
is parent organization of: CistromeFinder
is parent organization of: TM4
is parent organization of: WorfDB
is parent organization of: Predictive Networks
is parent organization of: RamiGO
is parent organization of: DFCI Animal Resources Facility
is parent organization of: DFCI Biohazard Containment Core Facility
is parent organization of: DFCI Biospecimen Repository Core Facility
is parent organization of: DFCI Blais Proteomics Center
is parent organization of: DFCI Clinical Research Laboratory
is parent organization of: DFCI Survey and Data Management Core
is parent organization of: DFCI Flow Cytometry Core Facility
is parent organization of: DFCI Medical Arts Core Facility
is parent organization of: DFCI Microarray Core Facility
is parent organization of: Dana-Farber Cancer Institute Molecular Biology Core Facility
is parent organization of: DFCI RNA Interference Screening Facility
is parent organization of: DFCI Shannon McCormack Advanced Molecular Diagnostics Laboratory
is parent organization of: MAnorm
is parent organization of: NPS
is parent organization of: DFCI Confocal and Light Microscopy Core Facility
is parent organization of: DFCI Monoclonal Antibody Core Facility
is parent organization of: Dana-Farber Cancer Institute Labs and Facilities
is parent organization of: DFCI Center for Cancer Computational Biology
is parent organization of: GeneSigDB
is parent organization of: MACS
is parent organization of: DGAP
Cancer NCI ;
Jimmy Fund
Free, Freely available Crossref funder ID: 100007886, grid.65499.37, Wikidata: Q1159198, ISNI: 0000 0001 2106 9910, nif-0000-30432 https://ror.org/02jzgtq86 SCR_003040 Dana Farber Cancer Institute, Dana-Farber 2026-08-01 12:02:16 6
Proteome Commons Tranche repository
 
Resource Report
Resource Website
1+ mentions
Proteome Commons Tranche repository (RRID:SCR_003441) Tranche software resource A distributed file storage system that you can upload files to and download files from. All files uploaded to the repository are replicated several times to protect against their accidental loss. Files uploaded to the repository can be of any size, can be of any file type, and can be encrypted with a passphrase of your choosing. The Proteome Commons Tranche repository is the first instance of a Tranche repository. Tranche, was created so that anybody can take it and make their own Tranche repository. This is the first implementation of the Tranche software, and is useful as a test bed for the software. This repository relies on educational institutions to provide the hardware and facilities for Tranche servers. While we maintain a set of servers, the continued growth of this public resource will rely on the generosity of the institutions that use the repository most. proteome, storage, proteomics, distributed, server, mass spectrometry, protein, peptide, file sharing, security is listed by: Biositemaps
has parent organization: University of Michigan; Ann Arbor; USA
has parent organization: Proteome Commons
NCI ;
Clinical Proteomics Technologies for Cancer ;
NCRR P41-RR018627
PMID:21063945
PMID:20356086
Open unspecified license (Apache v2); registration required . See Terms of Use, Https://proteomecommons.org/terms.jsp nif-0000-33195 http://tranche.proteomecommons.org SCR_003441 Tranche Project 2026-08-01 12:02:30 8
Central Brain Tumor Registry of the United States
 
Resource Report
Resource Website
10+ mentions
Central Brain Tumor Registry of the United States (RRID:SCR_008748) CBTRUS nonprofit organization Voluntary, non-profit organization dedicated to collecting and disseminating statistical data. Resource for gathering and disseminating epidemiologic data on all primary benign and malignant brain and other CNS tumors. human, brain, tumor, cancer, central nervous system, epidemiology, incidence, survival, diagnosis, treatment, benign, malignant, registry, epidemiological data, aggregator, clinical, statistics, population, histology, age, gender, race, hispanic, mortality Brain tumor, Aging American Brain Tumor Association ;
National Brain Tumor Society ;
Pediatric Brain Tumor Foundation ;
NCI contract HHSN261201000576P
PMID:23095881 Application required., The community can contribute to this resource grid.492337.8, ISNI: 0000 0004 0484 2205, nlx_143889 https://ror.org/03849s113 SCR_008748 2026-08-01 12:03:52 26
JaBba
 
Resource Report
Resource Website
1+ mentions
JaBba (RRID:SCR_027134) software resource, software application Software tool to infer junction-balanced genome graphs with high fidelity. Builds genome graph based on junctions and read depth from whole genome sequencing, inferring optimal copy numbers for both vertices (DNA segments) and edges (bonds between segments). Builds genome graph, junctions and read depth, infer junction-balanced genome graphs, whole genome sequencing, inferring optimal copy numbers, vertices and edges, DNA segments, bonds between segments, NCI P01 CA91955;
NCI P30 CA015704
PMID:33007263 Free, Available for download, Freely available, SCR_027134 Junction Balance Analysis 2026-08-01 12:14:08 1
bam readcount
 
Resource Report
Resource Website
10+ mentions
bam readcount (RRID:SCR_023653) software resource, software application Software tool that runs on BAM or CRAM file and generates low level information about sequencing data at specific nucleotide positions. Its outputs include observed bases, readcounts, summarized mapping and base qualities, strandedness information, mismatch counts, and position within the reads. BAM file, CRAM file, sequencing data, nucleotide positions, NCI R50CA211782;
NCI P01CA101937;
NCI K22CA188163;
NCI 1U01CA209936;
NCI U24CA237719;
Edward P. Evans Foundation ;
NHGRI R00 HG007940
PMID:34341766 Free, Available for download, Freely available SCR_023653 bam-readcount 2026-08-01 12:11:14 22
Adenoma Polyp Tissue Bank
 
Resource Report
Resource Website
Adenoma Polyp Tissue Bank (RRID:SCR_005366) APTB biomaterial supply resource, material resource THIS RESOURCE IS NO LONGER IN SERVICE, documented August 29, 2016. The Adenoma Polyp Tissue Bank (APTB) receives whole blood from patients enrolled in the Prevention of Sporadic Colorectal Adenomas with Celecoxib clinical trial. We have reached our accrual on blood submissions, so we will no longer be receiving blood specimens The objectives of this trial are as follows: A. To determine the efficacy and safety of celecoxib versus placebo in preventing the occurrence of newly detected colorectal adenomas in subjects at increased risk for colorectal carcinoma. In addition to incidence, other established risk factors will be evaluated for their association with occurrence of new colorectal adenomas, including cancer family history and adenoma size, histopathologic grade, multiplicity and location. Primary assessment of treatment efficacy will be the reduction in the number of subjects with adenomas at colonoscopy after Year 1 and Year 3 of study drug use. Secondary assessments of treatment efficacy will be 1) the number of adenomas 2) the histopathologic grade of adenomas and 3) the size of adenomas, also measured after one year and three years of study drug use. These factors will be incorporated into a risk model for predicting adenoma occurrence and response to celecoxib. B. To determine the efficacy of celecoxib versus placebo in modulating one or more of a panel of biomarkers for colorectal cancer at the cellular and molecular level sampled in a subset of subjects at selective sites at baseline and after Year 1 and Year 3 of study drug use. These biomarkers will include measurements of aberrant crypt foci (ACF), proliferation (index and crypt distribution), apoptosis (index and crypt distribution), COX expression and activity. If modulation of one or more mucosal biomarkers occur, we will explore whether it correlates with the development of incident colorectal neoplasia (adenomas/carcinomas), thereby attempting to validate the surrogacy of that biomarker. C. To develop a specimen bank. Serum and white blood cells are isolated from whole blood and adenoma tissue blocks and slides are banked. Banked specimens will become available for use in correlative science studies at a later point. This project began in 1999 and will be extended through 2006. The lead principal investigator is Monica M. Bertagnolli, MD, Brigham and Women''s Hospital, Boston, MA, and the APTB Director is Scott Jewell, Ph.D., Department of Pathology, The Ohio State University. The APTB is supported by the NIH, NCI Division of Cancer Prevention, in connection with the Strang Cancer Prevention Center, Cornell University, New York., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. blood, serum, white blood cell, adenoma tissue, tissue, whole blood, block, slide, colorectal adenoma, celecoxib, adenoma, cancer, colorectal cancer, clinical trial, polyp, risk factor is listed by: One Mind Biospecimen Bank Listing
has parent organization: Human Tissue Resource Network
has parent organization: Human Tissue Resource Network
Increased risk for colorectal carcinoma NCI THIS RESOURCE IS NO LONGER IN SERVICE nlx_144435 SCR_005366 APTB Specimen Bank 2026-08-01 12:10:48 0
somalier
 
Resource Report
Resource Website
somalier (RRID:SCR_028167) software resource, software application Software application for rapid relatedness estimation for cancer and germline studies using efficient genome sketches extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF. Used for rapid relatedness estimation for cancer and germline studies using efficient genome sketches. rapid relatedness estimation, cancer and germline studies, efficient genome sketches, quality control, NHGRI R41HG010126;
NHGRI R01HG009141;
NCI U24CA209999;
NCI R37CA246183;
NCI P30CA04014
PMID:32664994 Free, Available for download, Freely available SCR_028167 Somalier 2026-08-01 12:14:23 0
Spectroscopic Imaging, VIsualization, and Computing (SIVIC)
 
Resource Report
Resource Website
Spectroscopic Imaging, VIsualization, and Computing (SIVIC) (RRID:SCR_027875) SIVIC software resource, software application Software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies. DICOM MR Spectroscopy Workflows, data processing, data visualization, DICOM MR spectroscopy data, NCI RO1 CA127612;
NCI P01 CA11816;
NIBIB P41EB013598
PMID:23970895 Free, Available for download, Freely available SCR_027875 2026-08-01 12:14:39 0
Karmanos Cancer Institute
 
Resource Report
Resource Website
Karmanos Cancer Institute (RRID:SCR_000508) Karmanos data or information resource, portal Center for patient care, education and research on cancer. The institute focuses its research on prevention methods, early detection, treatment and finding cures. cancer, research, education, prevention, early detection, treatment, patient, care has parent organization: Wayne State University; Michigan; USA
is parent organization of: JP McCarthy Cord Stem Cell Bank
Cancer NCI Public nlx_143656 SCR_000508 Karmanos Cancer Center, Barbara Ann Karmanos Cancer Institute, Barbara Ann Karmanos Cancer Center 2026-08-02 09:02:54 0
DCTD
 
Resource Report
Resource Website
10+ mentions
DCTD (RRID:SCR_004196) DCTD funding resource, data or information resource, portal Division of NCI that takes prospective cancer detection and treatment leads, facilitates their paths to clinical application, and expedites the initial and subsequent large-scale testing of new agents, biomarkers, imaging tests, and other therapeutic interventions (radiation, surgery, immunotherapy) in patients. DCTD, like all of NCI, supports many programs that could not be done without government funding - investigators supported by the division engage in scientifically sound, high-risk research that may yield great benefits for patients with cancer, but are too difficult or risky for industry or academia to pursue. This includes a particular emphasis on the development of distinct molecular signatures for cancer, refined molecular assays, and state-of-the-art imaging techniques that will guide oncologic therapy in the future. The division has eight major programs that work together to bring unique molecules, diagnostic tests, and therapeutic interventions from the laboratory bench to the patient bedside: * Cancer Diagnosis Program * Cancer Imaging Program * Cancer Therapy Evaluation Program * Developmental Therapeutics Program * Radiation Research Program * Translational Research Program * Biometrics Research Branch * Office of Cancer Complementary and Alternative Medicine treatment, diagnosis, molecule, diagnostic test, therapeutic intervention is listed by: OMICtools
has parent organization: National Cancer Institute
is parent organization of: CDP
Cancer NCI OMICS_01537 SCR_004196 Division of Cancer Treatment and Diagnosis 2026-08-02 09:04:04 18
CytoTRACE
 
Resource Report
Resource Website
100+ mentions
CytoTRACE (RRID:SCR_022828) simulation software, software resource, software application Software tool that predicts differentiation state of cells from single cell RNA sequencing data. Used for predicting differentiation states from scRNA-seq data. differentiation state of cells, single cell RNA sequencing data, predicting differentiation states, scRNA-seq data NCI R00CA187192;
NCI R01CA100225;
Stinehart Reed foundation ;
Stanford Bio-X Interdisciplinary Initiatives Seed Grants Program ;
Virginia and D.K. Ludwig Fund for Cancer Research ;
U.S. Department of Defense ;
National Science Foundation Graduate Research Fellowship ;
Stanford Bio-X Bowes Graduate Student Fellowship ;
Stanford Medical Science Training Program
PMID:31974247 Free, Freely available SCR_022828 Cellular (Cyto) Trajectory Reconstruction Analysis using gene Counts and Expression 2026-08-02 09:08:32 132
Harvard Medical School Center for Cancer Systems Pharmacology
 
Resource Report
Resource Website
Harvard Medical School Center for Cancer Systems Pharmacology (RRID:SCR_022831) CCSP organization portal, data or information resource, portal Center includes studies for responsiveness and resistance to anti cancer drugs. Committed to training students and postdocs, promoting junior faculty and ensuring that data and software are reproducible, reliable and publicly accessible. Member of National Cancer Institute’s Cancer Systems Biology Consortium. anti cancer drugs, responsiveness and resistance, National Cancer Institute, Systems Biology Consortium. has parent organization: Harvard University; Cambridge; United States Cancer, Melanoma, Triple negative breast cancer (TNBC), Glioblastoma multiforme (GBM) NCI U54 CA225088 Free, Freely available SCR_022831 Center for Cancer Systems Pharmacology 2026-08-02 09:08:32 0
Robot Reviewer
 
Resource Report
Resource Website
1+ mentions
Robot Reviewer (RRID:SCR_018961) text extraction software, software resource, software application Software tool as machine learning system that automatically assesses bias in clinical trials. From PDF formatted trial report determines risks of bias for domains defined by Cochrane Risk of Bias (RoB) tool, and extracts supporting text for these judgments. Automated review, data mining, manuscript screening, artificial intelligence, automatic evidence synthesis, evidence synthesis, trial conduct information, data trial, bias, bias assessement NLM R01 LM012086;
NCI UH2 CA203711;
UK Medical Research Council
PMID:26104742 Free, Freely available SCR_018961 2026-08-02 09:07:54 5
DeepNeuro
 
Resource Report
Resource Website
1+ mentions
DeepNeuro (RRID:SCR_016911) software toolkit, software resource Software Python package for neuroimaging data. Framework to design and train neural network architectures. Used in medical imaging community to ensure consistent performance of networks across variable users, institutions, and scanners. Design and train neural network architectures, medical imaging, neuroimaging data, neuroimaging uses: Python Programming Language
is related to: Massachusetts General Hospital
has parent organization: Harvard University; Cambridge; United States
NIDA T90 DA022759;
NIDA R90 DA023427;
NIH Blueprint for Neuroscience Research ;
NIBI ;
NIBIB T32 EB1680;
NCI U01 CA154601;
NCI U24 CA180927;
NCI U24 CA180918;
NIBIB P41 EB015896
PMID:32578020 Free, Available for download, Freely available SCR_016911 2026-08-02 09:07:34 2
SYGNAL
 
Resource Report
Resource Website
1+ mentions
SYGNAL (RRID:SCR_023080) software toolkit, software resource Software pipeline to integrate correlative, causal and mechanistic inference approaches into unified framework that systematically infers causal flow of information from mutations to TFs and miRNAs to perturbed gene expression patterns across patients. Used to decipher transcriptional regulatory networks from multi-omic and clinical patient data. Applicable for integrating genomic and transcriptomic measurements from human cohorts. Integrating genomic and transcriptomic measurements, human cohorts, transcriptional regulatory networks, integrate correlative, causal and mechanistic inference, unified framework, infers causal flow of information, mutations to TFs, miRNAs to perturbed gene expression patterns across patients, NIGMS P50GM076547;
NIGMS R01GM077398;
NSF ABI NSF-1262637;
NSF DBI-0640950;
NCI U24CA143835;
American Cancer Society Research Scholar Grant
PMID:27426982 Free, Available for download, Freely available SCR_023080 SYstems Genetic Network AnaLysis 2026-08-02 09:08:50 1
mtradeR
 
Resource Report
Resource Website
mtradeR (RRID:SCR_022977) software toolkit, software resource Software R package implements Joint model with Matching and Regularization and simulation pipeline. Used to test association between taxa and disease risk, and adjusted for correlated taxa screened by pre-selection procedure in abundance and prevalence, individually. test association between taxa and disease risk, correlated taxa screening, taxa and disease risk NIDDK U24DK097771;
NCI CA21765;
American Lebanese Syrian Associated Charities
PMID:36123651 Free, Available for download, Freely available SCR_022977 Metagenomic TRajectory Analysis with Disease Endpoint and Risk factors 2026-08-02 09:08:34 0
SCRuB
 
Resource Report
Resource Website
1+ mentions
SCRuB (RRID:SCR_023518) software toolkit, software resource Software R package to help researchers address common issue of contamination in microbial studies. Well aware MiSeq decontamination program. Source tracking, contamination removal, microBiomes, MiSeq decontamination, contamination in microbial studies, Rockefeller University ;
Columbia University ;
CIFAR Azrieli Global Scholarship ;
NICHD R01HD106017;
NCI R01CA245894
PMID:36928429 Free, Available for download, Freely available SCR_023518 Source-tracking for Contamination Removal in microBiomes, Source tracking for Contamination Removal in microBiomes 2026-08-02 09:08:47 1

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